RNA–Protein interactions for RNA: ENST00000430858.1

HDAC6-207, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 618 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-207ENST00000430858 NISCHQ9Y2I1 1504 aa23.98■■□□□ 1.43
HDAC6-207ENST00000430858 CCDC180Q9P1Z9 1646 aa21.33■■□□□ 1.01
HDAC6-207ENST00000430858 ABCC9O60706 1549 aa21.01■□□□□ 0.95
HDAC6-207ENST00000430858 RB1CC1Q8TDY2 1594 aa20.17■□□□□ 0.82
HDAC6-207ENST00000430858 NACADO15069 1562 aa20.12■□□□□ 0.81
HDAC6-207ENST00000430858 DCAF8L2P0C7V8 631 aa20.1■□□□□ 0.81
HDAC6-207ENST00000430858 MYO15BQ96JP2 1530 aa20■□□□□ 0.79
HDAC6-207ENST00000430858 ZCCHC6Q5VYS8 1495 aaKnown RBP19.95■□□□□ 0.78
HDAC6-207ENST00000430858 DCAF1Q9Y4B6 1507 aa19.85■□□□□ 0.77
HDAC6-207ENST00000430858 PABPN1Q86U42 306 aaKnown RBP eCLIP19.63■□□□□ 0.731e-6■■■□□ 17
HDAC6-207ENST00000430858 UNC13AQ9UPW8 1703 aa19.61■□□□□ 0.73
HDAC6-207ENST00000430858 BICRAQ9NZM4 1560 aa19.53■□□□□ 0.72
HDAC6-207ENST00000430858 SCRIBQ14160 1630 aa19.45■□□□□ 0.7
HDAC6-207ENST00000430858 DNAJC5BQ9UF47 199 aa19.4■□□□□ 0.7
HDAC6-207ENST00000430858 SHROOM4Q9ULL8 1493 aa19.38■□□□□ 0.69
HDAC6-207ENST00000430858 EIF4G1Q04637 1599 aaKnown RBP19.04■□□□□ 0.64
HDAC6-207ENST00000430858 CC2D2AQ9P2K1 1620 aa18.99■□□□□ 0.63
HDAC6-207ENST00000430858 CECR2Q9BXF3 1484 aa18.9■□□□□ 0.62
HDAC6-207ENST00000430858 SMARCA4P51532 1647 aa18.6■□□□□ 0.57
HDAC6-207ENST00000430858 BAZ1AQ9NRL2 1556 aaPredicted RBP18.6■□□□□ 0.57
HDAC6-207ENST00000430858 NCAPD3P42695 1498 aa18.59■□□□□ 0.57
HDAC6-207ENST00000430858 ATAD2BQ9ULI0 1458 aa18.57■□□□□ 0.56
HDAC6-207ENST00000430858 SMARCA2P51531 1590 aa18.54■□□□□ 0.56
HDAC6-207ENST00000430858 MROH2BQ7Z745 1585 aa18.47■□□□□ 0.55
HDAC6-207ENST00000430858 HMGXB3Q12766 1538 aa18.46■□□□□ 0.55
HDAC6-207ENST00000430858 PEG3Q9GZU2 1588 aa18.45■□□□□ 0.54
HDAC6-207ENST00000430858 BAZ1BQ9UIG0 1483 aaKnown RBP18.4■□□□□ 0.54
HDAC6-207ENST00000430858 RSF1Q96T23 1441 aaPredicted RBP18.23■□□□□ 0.51
HDAC6-207ENST00000430858 WIZO95785 1651 aa18.23■□□□□ 0.51
HDAC6-207ENST00000430858 ERCC6Q03468 1493 aa18.14■□□□□ 0.49
HDAC6-207ENST00000430858 NESP48681 1621 aa18.13■□□□□ 0.49
HDAC6-207ENST00000430858 LAMC3Q9Y6N6 1575 aa18.09■□□□□ 0.49
HDAC6-207ENST00000430858 TOP2AP11388 1531 aaKnown RBP18.07■□□□□ 0.48
HDAC6-207ENST00000430858 CADPSQ9ULU8 1353 aa18.04■□□□□ 0.48
HDAC6-207ENST00000430858 PDS5BQ9NTI5 1447 aa18.01■□□□□ 0.47
HDAC6-207ENST00000430858 CUX2O14529 1486 aa18■□□□□ 0.47
HDAC6-207ENST00000430858 CFTRP13569 1480 aa17.91■□□□□ 0.46
HDAC6-207ENST00000430858 THOC2Q8NI27 1593 aaKnown RBP17.87■□□□□ 0.45
HDAC6-207ENST00000430858 KIF21AQ7Z4S6 1674 aa17.87■□□□□ 0.45
HDAC6-207ENST00000430858 CCDC88BA6NC98 1476 aa17.86■□□□□ 0.45
HDAC6-207ENST00000430858 FANCD2Q9BXW9 1451 aa17.82■□□□□ 0.44
HDAC6-207ENST00000430858 MRC2Q9UBG0 1479 aa17.81■□□□□ 0.44
HDAC6-207ENST00000430858 CEP164Q9UPV0 1460 aa17.81■□□□□ 0.44
HDAC6-207ENST00000430858 WDR62O43379 1518 aa17.74■□□□□ 0.43
HDAC6-207ENST00000430858 SUPT5HO00267 1087 aaKnown RBP17.69■□□□□ 0.42
HDAC6-207ENST00000430858 PRDM2Q13029 1718 aa17.67■□□□□ 0.42
HDAC6-207ENST00000430858 URB2Q14146 1524 aaKnown RBP17.63■□□□□ 0.41
HDAC6-207ENST00000430858 DNAJC5Q9H3Z4 198 aa17.59■□□□□ 0.41
HDAC6-207ENST00000430858 ABCC8Q09428 1581 aa17.54■□□□□ 0.4
HDAC6-207ENST00000430858 TOPBP1Q92547 1522 aa17.52■□□□□ 0.39
HDAC6-207ENST00000430858 DNMBPQ6XZF7 1577 aa17.47■□□□□ 0.39
HDAC6-207ENST00000430858 IFT140Q96RY7 1462 aa17.45■□□□□ 0.38
HDAC6-207ENST00000430858 POLA1P09884 1462 aaPredicted RBP17.37■□□□□ 0.37
HDAC6-207ENST00000430858 ZNF608Q9ULD9 1512 aaPredicted RBP17.36■□□□□ 0.37
HDAC6-207ENST00000430858 CUX1P39880 1505 aa17.32■□□□□ 0.36
HDAC6-207ENST00000430858 SOGA1O94964 1423 aa17.31■□□□□ 0.36
HDAC6-207ENST00000430858 TARBP1Q13395 1621 aaKnown RBP17.31■□□□□ 0.36
HDAC6-207ENST00000430858 FGD5Q6ZNL6 1462 aa17.3■□□□□ 0.36
HDAC6-207ENST00000430858 RAD54L2Q9Y4B4 1467 aa17.28■□□□□ 0.36
HDAC6-207ENST00000430858 OSCARQ8IYS5 282 aa17.26■□□□□ 0.35
HDAC6-207ENST00000430858 EIF4G3O43432 1585 aaKnown RBP17.26■□□□□ 0.35
HDAC6-207ENST00000430858 AQRO60306 1485 aaKnown RBP eCLIP17.25■□□□□ 0.35
HDAC6-207ENST00000430858 TDRD9Q8NDG6 1382 aaKnown RBP17.21■□□□□ 0.35
HDAC6-207ENST00000430858 WRNQ14191 1432 aaPredicted RBP eCLIP17.21■□□□□ 0.34
HDAC6-207ENST00000430858 WDR97A6NE52 1622 aa17.2■□□□□ 0.34
HDAC6-207ENST00000430858 TOP2BQ02880 1626 aa17.14■□□□□ 0.33
HDAC6-207ENST00000430858 ABCA10Q8WWZ4 1543 aa17.14■□□□□ 0.33
HDAC6-207ENST00000430858 BIVM-ERCC5R4GMW8 1640 aa17.13■□□□□ 0.33
HDAC6-207ENST00000430858 SYNJ1O43426 1573 aa17.12■□□□□ 0.33
HDAC6-207ENST00000430858 GRIN2BQ13224 1484 aa17.12■□□□□ 0.33
HDAC6-207ENST00000430858 GAPVD1Q14C86 1478 aa17.1■□□□□ 0.33
HDAC6-207ENST00000430858 FBLN2P98095 1184 aa17.09■□□□□ 0.33
HDAC6-207ENST00000430858 SNAPC4Q5SXM2 1469 aa17.09■□□□□ 0.33
HDAC6-207ENST00000430858 MAGI1Q96QZ7 1491 aaPredicted RBP17.08■□□□□ 0.32
HDAC6-207ENST00000430858 ABCA5Q8WWZ7 1642 aa17.05■□□□□ 0.32
HDAC6-207ENST00000430858 CHMP7Q8WUX9 453 aaPredicted RBP17.04■□□□□ 0.32
HDAC6-207ENST00000430858 CHD1O14646 1710 aa17.03■□□□□ 0.32
HDAC6-207ENST00000430858 SYNJ2O15056 1496 aa17.01■□□□□ 0.31
HDAC6-207ENST00000430858 PBRM1Q86U86 1689 aa17■□□□□ 0.31
HDAC6-207ENST00000430858 TRIM41Q8WV44 630 aa16.94■□□□□ 0.3
HDAC6-207ENST00000430858 ARHGEF11O15085 1522 aa16.93■□□□□ 0.3
HDAC6-207ENST00000430858 ERICH3Q5RHP9 1530 aa16.93■□□□□ 0.3
HDAC6-207ENST00000430858 RIMBP3CA6NJZ7 1639 aa16.92■□□□□ 0.3
HDAC6-207ENST00000430858 RIMBP3BA6NNM3 1639 aa16.92■□□□□ 0.3
HDAC6-207ENST00000430858 RIMBP3Q9UFD9 1639 aa16.92■□□□□ 0.3
HDAC6-207ENST00000430858 FHAD1B1AJZ9 1412 aa16.91■□□□□ 0.3
HDAC6-207ENST00000430858 CLASP1Q7Z460 1538 aa16.9■□□□□ 0.3
HDAC6-207ENST00000430858 ADAMTS12P58397 1594 aa16.89■□□□□ 0.3
HDAC6-207ENST00000430858 GRIN2AQ12879 1464 aa16.88■□□□□ 0.29
HDAC6-207ENST00000430858 KIF27Q86VH2 1401 aa16.87■□□□□ 0.29
HDAC6-207ENST00000430858 NUP160Q12769 1436 aa16.82■□□□□ 0.28
HDAC6-207ENST00000430858 IGF1RP08069 1367 aa16.81■□□□□ 0.28
HDAC6-207ENST00000430858 CYB5RLQ6IPT4 315 aa16.81■□□□□ 0.28
HDAC6-207ENST00000430858 ARAP1Q96P48 1450 aa16.79■□□□□ 0.28
HDAC6-207ENST00000430858 CEP170Q5SW79 1584 aa16.78■□□□□ 0.28
HDAC6-207ENST00000430858 CUL7Q14999 1698 aa16.73■□□□□ 0.27
HDAC6-207ENST00000430858 CARMIL1Q5VZK9 1371 aa16.71■□□□□ 0.27
HDAC6-207ENST00000430858 JPH4Q96JJ6 628 aa16.68■□□□□ 0.26
HDAC6-207ENST00000430858 SHROOM2Q13796 1616 aa16.67■□□□□ 0.26
HDAC6-207ENST00000430858 RUSC2Q8N2Y8 1516 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 6.7 ms