RNA–Protein interactions for RNA: ENST00000430682.5

SMPD4-204, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 3

Gene SMPD4, Length 820 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-204ENST00000430682 NISCHQ9Y2I1 1504 aa31.12■■■□□ 2.57
SMPD4-204ENST00000430682 CCDC180Q9P1Z9 1646 aa27.78■■■□□ 2.04
SMPD4-204ENST00000430682 ABCC9O60706 1549 aa27.49■■□□□ 1.99
SMPD4-204ENST00000430682 RB1CC1Q8TDY2 1594 aa26.24■■□□□ 1.79
SMPD4-204ENST00000430682 NACADO15069 1562 aa26.14■■□□□ 1.78
SMPD4-204ENST00000430682 DCAF8L2P0C7V8 631 aa26.08■■□□□ 1.77
SMPD4-204ENST00000430682 MYO15BQ96JP2 1530 aa25.87■■□□□ 1.73
SMPD4-204ENST00000430682 UNC13AQ9UPW8 1703 aa25.86■■□□□ 1.73
SMPD4-204ENST00000430682 ZCCHC6Q5VYS8 1495 aaKnown RBP25.85■■□□□ 1.73
SMPD4-204ENST00000430682 DCAF1Q9Y4B6 1507 aa25.68■■□□□ 1.7
SMPD4-204ENST00000430682 PABPN1Q86U42 306 aaKnown RBP eCLIP25.64■■□□□ 1.74e-6■□□□□ 9.3
SMPD4-204ENST00000430682 BICRAQ9NZM4 1560 aa25.6■■□□□ 1.69
SMPD4-204ENST00000430682 DNAJC5BQ9UF47 199 aa25.59■■□□□ 1.69
SMPD4-204ENST00000430682 SCRIBQ14160 1630 aa25.37■■□□□ 1.65
SMPD4-204ENST00000430682 SHROOM4Q9ULL8 1493 aa25.09■■□□□ 1.61
SMPD4-204ENST00000430682 EIF4G1Q04637 1599 aaKnown RBP24.88■■□□□ 1.57
SMPD4-204ENST00000430682 CC2D2AQ9P2K1 1620 aa24.86■■□□□ 1.57
SMPD4-204ENST00000430682 CECR2Q9BXF3 1484 aa24.69■■□□□ 1.54
SMPD4-204ENST00000430682 SMARCA4P51532 1647 aa24.23■■□□□ 1.47
SMPD4-204ENST00000430682 NCAPD3P42695 1498 aa24.14■■□□□ 1.46
SMPD4-204ENST00000430682 ATAD2BQ9ULI0 1458 aa24.14■■□□□ 1.46
SMPD4-204ENST00000430682 BAZ1AQ9NRL2 1556 aaPredicted RBP24.08■■□□□ 1.45
SMPD4-204ENST00000430682 SMARCA2P51531 1590 aa24.04■■□□□ 1.44
SMPD4-204ENST00000430682 MROH2BQ7Z745 1585 aa24.03■■□□□ 1.44
SMPD4-204ENST00000430682 HMGXB3Q12766 1538 aa23.99■■□□□ 1.43
SMPD4-204ENST00000430682 PEG3Q9GZU2 1588 aa23.96■■□□□ 1.43
SMPD4-204ENST00000430682 BAZ1BQ9UIG0 1483 aaKnown RBP23.88■■□□□ 1.41
SMPD4-204ENST00000430682 WIZO95785 1651 aa23.79■■□□□ 1.4
SMPD4-204ENST00000430682 NESP48681 1621 aa23.76■■□□□ 1.39
SMPD4-204ENST00000430682 ERCC6Q03468 1493 aa23.62■■□□□ 1.37
SMPD4-204ENST00000430682 RSF1Q96T23 1441 aaPredicted RBP23.61■■□□□ 1.37
SMPD4-204ENST00000430682 LAMC3Q9Y6N6 1575 aa23.55■■□□□ 1.36
SMPD4-204ENST00000430682 KIF21AQ7Z4S6 1674 aa23.49■■□□□ 1.35
SMPD4-204ENST00000430682 CUX2O14529 1486 aa23.47■■□□□ 1.35
SMPD4-204ENST00000430682 THOC2Q8NI27 1593 aaKnown RBP23.44■■□□□ 1.34
SMPD4-204ENST00000430682 TOP2AP11388 1531 aaKnown RBP23.42■■□□□ 1.34
SMPD4-204ENST00000430682 CADPSQ9ULU8 1353 aa23.4■■□□□ 1.34
SMPD4-204ENST00000430682 PDS5BQ9NTI5 1447 aa23.33■■□□□ 1.33
SMPD4-204ENST00000430682 CFTRP13569 1480 aa23.23■■□□□ 1.31
SMPD4-204ENST00000430682 CCDC88BA6NC98 1476 aa23.18■■□□□ 1.3
SMPD4-204ENST00000430682 MRC2Q9UBG0 1479 aa23.17■■□□□ 1.3
SMPD4-204ENST00000430682 FANCD2Q9BXW9 1451 aa23.16■■□□□ 1.3
SMPD4-204ENST00000430682 DNAJC5Q9H3Z4 198 aa23.14■■□□□ 1.29
SMPD4-204ENST00000430682 WDR62O43379 1518 aa23.13■■□□□ 1.29
SMPD4-204ENST00000430682 CEP164Q9UPV0 1460 aa23.13■■□□□ 1.29
SMPD4-204ENST00000430682 PRDM2Q13029 1718 aa23.12■■□□□ 1.29
SMPD4-204ENST00000430682 URB2Q14146 1524 aaKnown RBP23.01■■□□□ 1.27
SMPD4-204ENST00000430682 TOPBP1Q92547 1522 aa22.78■■□□□ 1.24
SMPD4-204ENST00000430682 SUPT5HO00267 1087 aaKnown RBP22.77■■□□□ 1.24
SMPD4-204ENST00000430682 DNMBPQ6XZF7 1577 aa22.72■■□□□ 1.23
SMPD4-204ENST00000430682 ZNF608Q9ULD9 1512 aaPredicted RBP22.68■■□□□ 1.22
SMPD4-204ENST00000430682 ABCC8Q09428 1581 aa22.66■■□□□ 1.22
SMPD4-204ENST00000430682 IFT140Q96RY7 1462 aa22.65■■□□□ 1.22
SMPD4-204ENST00000430682 TARBP1Q13395 1621 aaKnown RBP22.61■■□□□ 1.21
SMPD4-204ENST00000430682 POLA1P09884 1462 aaPredicted RBP22.57■■□□□ 1.2
SMPD4-204ENST00000430682 EIF4G3O43432 1585 aaKnown RBP22.55■■□□□ 1.2
SMPD4-204ENST00000430682 CUX1P39880 1505 aa22.55■■□□□ 1.2
SMPD4-204ENST00000430682 RAD54L2Q9Y4B4 1467 aa22.52■■□□□ 1.2
SMPD4-204ENST00000430682 AQRO60306 1485 aaKnown RBP eCLIP22.49■■□□□ 1.192e-7■■■■□ 19.3
SMPD4-204ENST00000430682 FGD5Q6ZNL6 1462 aa22.47■■□□□ 1.19
SMPD4-204ENST00000430682 SOGA1O94964 1423 aa22.44■■□□□ 1.18
SMPD4-204ENST00000430682 OSCARQ8IYS5 282 aa22.44■■□□□ 1.18
SMPD4-204ENST00000430682 CHD1O14646 1710 aa22.39■■□□□ 1.17
SMPD4-204ENST00000430682 TDRD9Q8NDG6 1382 aaKnown RBP22.38■■□□□ 1.17
SMPD4-204ENST00000430682 WDR97A6NE52 1622 aa22.37■■□□□ 1.17
SMPD4-204ENST00000430682 SYNJ1O43426 1573 aa22.28■■□□□ 1.16
SMPD4-204ENST00000430682 BIVM-ERCC5R4GMW8 1640 aa22.27■■□□□ 1.16
SMPD4-204ENST00000430682 TRIM41Q8WV44 630 aa22.26■■□□□ 1.15
SMPD4-204ENST00000430682 TOP2BQ02880 1626 aa22.24■■□□□ 1.15
SMPD4-204ENST00000430682 SNAPC4Q5SXM2 1469 aa22.24■■□□□ 1.15
SMPD4-204ENST00000430682 RIMBP3CA6NJZ7 1639 aa22.24■■□□□ 1.15
SMPD4-204ENST00000430682 RIMBP3BA6NNM3 1639 aa22.24■■□□□ 1.15
SMPD4-204ENST00000430682 RIMBP3Q9UFD9 1639 aa22.24■■□□□ 1.15
SMPD4-204ENST00000430682 PBRM1Q86U86 1689 aa22.23■■□□□ 1.15
SMPD4-204ENST00000430682 WRNQ14191 1432 aaPredicted RBP eCLIP22.22■■□□□ 1.155e-6■■■■■ 34.5
SMPD4-204ENST00000430682 ABCA10Q8WWZ4 1543 aa22.21■■□□□ 1.15
SMPD4-204ENST00000430682 FBLN2P98095 1184 aa22.21■■□□□ 1.15
SMPD4-204ENST00000430682 ABCA5Q8WWZ7 1642 aa22.2■■□□□ 1.15
SMPD4-204ENST00000430682 GRIN2BQ13224 1484 aa22.19■■□□□ 1.14
SMPD4-204ENST00000430682 GAPVD1Q14C86 1478 aa22.17■■□□□ 1.14
SMPD4-204ENST00000430682 ARHGEF11O15085 1522 aa22.16■■□□□ 1.14
SMPD4-204ENST00000430682 MAGI1Q96QZ7 1491 aaPredicted RBP22.15■■□□□ 1.14
SMPD4-204ENST00000430682 SYNJ2O15056 1496 aa22.09■■□□□ 1.13
SMPD4-204ENST00000430682 CLASP1Q7Z460 1538 aa22.08■■□□□ 1.13
SMPD4-204ENST00000430682 CHMP7Q8WUX9 453 aaPredicted RBP22.07■■□□□ 1.12
SMPD4-204ENST00000430682 ADAMTS12P58397 1594 aa22■■□□□ 1.11
SMPD4-204ENST00000430682 ARAP1Q96P48 1450 aa21.98■■□□□ 1.11
SMPD4-204ENST00000430682 CYB5RLQ6IPT4 315 aa21.94■■□□□ 1.1
SMPD4-204ENST00000430682 GRIN2AQ12879 1464 aa21.94■■□□□ 1.1
SMPD4-204ENST00000430682 ERICH3Q5RHP9 1530 aa21.92■■□□□ 1.1
SMPD4-204ENST00000430682 CEP170Q5SW79 1584 aa21.91■■□□□ 1.1
SMPD4-204ENST00000430682 FHAD1B1AJZ9 1412 aa21.89■■□□□ 1.09
SMPD4-204ENST00000430682 NUP160Q12769 1436 aa21.85■■□□□ 1.09
SMPD4-204ENST00000430682 ERCC6L2Q5T890 1561 aa21.83■■□□□ 1.09
SMPD4-204ENST00000430682 SHROOM2Q13796 1616 aa21.77■■□□□ 1.08
SMPD4-204ENST00000430682 IGF1RP08069 1367 aa21.75■■□□□ 1.07
SMPD4-204ENST00000430682 KIF27Q86VH2 1401 aa21.73■■□□□ 1.07
SMPD4-204ENST00000430682 RUSC2Q8N2Y8 1516 aa21.69■■□□□ 1.06
SMPD4-204ENST00000430682 CUL7Q14999 1698 aa21.69■■□□□ 1.06
SMPD4-204ENST00000430682 PRG4Q92954 1404 aaPredicted RBP21.61■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms