RNA–Protein interactions for RNA: ENST00000430454.5

HDAC9-211, Transcript of histone deacetylase 9, humanhuman

TSL 4

Gene HDAC9, Length 545 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-211ENST00000430454 NISCHQ9Y2I1 1504 aa22.32■■□□□ 1.16
HDAC9-211ENST00000430454 CCDC180Q9P1Z9 1646 aa19.98■□□□□ 0.79
HDAC9-211ENST00000430454 ABCC9O60706 1549 aa19.76■□□□□ 0.75
HDAC9-211ENST00000430454 RB1CC1Q8TDY2 1594 aa18.96■□□□□ 0.63
HDAC9-211ENST00000430454 NACADO15069 1562 aa18.88■□□□□ 0.61
HDAC9-211ENST00000430454 DCAF8L2P0C7V8 631 aa18.85■□□□□ 0.61
HDAC9-211ENST00000430454 MYO15BQ96JP2 1530 aa18.69■□□□□ 0.58
HDAC9-211ENST00000430454 ZCCHC6Q5VYS8 1495 aaKnown RBP18.52■□□□□ 0.55
HDAC9-211ENST00000430454 DCAF1Q9Y4B6 1507 aa18.49■□□□□ 0.55
HDAC9-211ENST00000430454 PABPN1Q86U42 306 aaKnown RBP eCLIP18.43■□□□□ 0.54
HDAC9-211ENST00000430454 UNC13AQ9UPW8 1703 aa18.36■□□□□ 0.53
HDAC9-211ENST00000430454 DNAJC5BQ9UF47 199 aa18.29■□□□□ 0.52
HDAC9-211ENST00000430454 BICRAQ9NZM4 1560 aa18.26■□□□□ 0.51
HDAC9-211ENST00000430454 SHROOM4Q9ULL8 1493 aa18.23■□□□□ 0.51
HDAC9-211ENST00000430454 SCRIBQ14160 1630 aa18.16■□□□□ 0.5
HDAC9-211ENST00000430454 EIF4G1Q04637 1599 aaKnown RBP17.87■□□□□ 0.45
HDAC9-211ENST00000430454 CC2D2AQ9P2K1 1620 aa17.85■□□□□ 0.45
HDAC9-211ENST00000430454 CECR2Q9BXF3 1484 aa17.82■□□□□ 0.44
HDAC9-211ENST00000430454 NCAPD3P42695 1498 aa17.4■□□□□ 0.38
HDAC9-211ENST00000430454 SMARCA2P51531 1590 aa17.37■□□□□ 0.37
HDAC9-211ENST00000430454 BAZ1AQ9NRL2 1556 aaPredicted RBP17.36■□□□□ 0.37
HDAC9-211ENST00000430454 SMARCA4P51532 1647 aa17.36■□□□□ 0.37
HDAC9-211ENST00000430454 ATAD2BQ9ULI0 1458 aa17.34■□□□□ 0.37
HDAC9-211ENST00000430454 HMGXB3Q12766 1538 aa17.28■□□□□ 0.36
HDAC9-211ENST00000430454 BAZ1BQ9UIG0 1483 aaKnown RBP17.24■□□□□ 0.35
HDAC9-211ENST00000430454 PEG3Q9GZU2 1588 aa17.2■□□□□ 0.34
HDAC9-211ENST00000430454 MROH2BQ7Z745 1585 aa17.15■□□□□ 0.34
HDAC9-211ENST00000430454 ERCC6Q03468 1493 aa17.14■□□□□ 0.33
HDAC9-211ENST00000430454 CUX2O14529 1486 aa17.03■□□□□ 0.32
HDAC9-211ENST00000430454 LAMC3Q9Y6N6 1575 aa16.99■□□□□ 0.31
HDAC9-211ENST00000430454 NESP48681 1621 aa16.96■□□□□ 0.31
HDAC9-211ENST00000430454 PDS5BQ9NTI5 1447 aa16.95■□□□□ 0.3
HDAC9-211ENST00000430454 WIZO95785 1651 aa16.94■□□□□ 0.3
HDAC9-211ENST00000430454 CADPSQ9ULU8 1353 aa16.9■□□□□ 0.3
HDAC9-211ENST00000430454 RSF1Q96T23 1441 aaPredicted RBP16.9■□□□□ 0.3
HDAC9-211ENST00000430454 TOP2AP11388 1531 aaKnown RBP16.81■□□□□ 0.28
HDAC9-211ENST00000430454 DNAJC5Q9H3Z4 198 aa16.8■□□□□ 0.28
HDAC9-211ENST00000430454 THOC2Q8NI27 1593 aaKnown RBP16.77■□□□□ 0.28
HDAC9-211ENST00000430454 KIF21AQ7Z4S6 1674 aa16.76■□□□□ 0.27
HDAC9-211ENST00000430454 MRC2Q9UBG0 1479 aa16.73■□□□□ 0.27
HDAC9-211ENST00000430454 CFTRP13569 1480 aa16.72■□□□□ 0.27
HDAC9-211ENST00000430454 CEP164Q9UPV0 1460 aa16.71■□□□□ 0.27
HDAC9-211ENST00000430454 FANCD2Q9BXW9 1451 aa16.68■□□□□ 0.26
HDAC9-211ENST00000430454 WDR62O43379 1518 aa16.65■□□□□ 0.26
HDAC9-211ENST00000430454 CCDC88BA6NC98 1476 aa16.61■□□□□ 0.25
HDAC9-211ENST00000430454 PRDM2Q13029 1718 aa16.53■□□□□ 0.24
HDAC9-211ENST00000430454 URB2Q14146 1524 aaKnown RBP16.48■□□□□ 0.23
HDAC9-211ENST00000430454 ABCC8Q09428 1581 aa16.47■□□□□ 0.23
HDAC9-211ENST00000430454 IFT140Q96RY7 1462 aa16.39■□□□□ 0.21
HDAC9-211ENST00000430454 TOPBP1Q92547 1522 aa16.36■□□□□ 0.21
HDAC9-211ENST00000430454 DNMBPQ6XZF7 1577 aa16.34■□□□□ 0.21
HDAC9-211ENST00000430454 SUPT5HO00267 1087 aaKnown RBP16.34■□□□□ 0.21
HDAC9-211ENST00000430454 OSCARQ8IYS5 282 aa16.33■□□□□ 0.2
HDAC9-211ENST00000430454 ZNF608Q9ULD9 1512 aaPredicted RBP16.23■□□□□ 0.19
HDAC9-211ENST00000430454 POLA1P09884 1462 aaPredicted RBP16.2■□□□□ 0.18
HDAC9-211ENST00000430454 SOGA1O94964 1423 aa16.19■□□□□ 0.18
HDAC9-211ENST00000430454 EIF4G3O43432 1585 aaKnown RBP16.17■□□□□ 0.18
HDAC9-211ENST00000430454 TARBP1Q13395 1621 aaKnown RBP16.17■□□□□ 0.18
HDAC9-211ENST00000430454 AQRO60306 1485 aaKnown RBP eCLIP16.15■□□□□ 0.18
HDAC9-211ENST00000430454 TRIM41Q8WV44 630 aa16.14■□□□□ 0.17
HDAC9-211ENST00000430454 WDR97A6NE52 1622 aa16.14■□□□□ 0.17
HDAC9-211ENST00000430454 FGD5Q6ZNL6 1462 aa16.14■□□□□ 0.17
HDAC9-211ENST00000430454 RAD54L2Q9Y4B4 1467 aa16.11■□□□□ 0.17
HDAC9-211ENST00000430454 CUX1P39880 1505 aa16.11■□□□□ 0.17
HDAC9-211ENST00000430454 FBLN2P98095 1184 aa16.1■□□□□ 0.17
HDAC9-211ENST00000430454 TDRD9Q8NDG6 1382 aaKnown RBP16.09■□□□□ 0.17
HDAC9-211ENST00000430454 CHMP7Q8WUX9 453 aaPredicted RBP16.04■□□□□ 0.16
HDAC9-211ENST00000430454 GRIN2BQ13224 1484 aa16.03■□□□□ 0.16
HDAC9-211ENST00000430454 MAGI1Q96QZ7 1491 aaPredicted RBP16.03■□□□□ 0.16
HDAC9-211ENST00000430454 WRNQ14191 1432 aaPredicted RBP eCLIP16.02■□□□□ 0.15
HDAC9-211ENST00000430454 SNAPC4Q5SXM2 1469 aa16■□□□□ 0.15
HDAC9-211ENST00000430454 CHD1O14646 1710 aa15.99■□□□□ 0.15
HDAC9-211ENST00000430454 ABCA10Q8WWZ4 1543 aa15.99■□□□□ 0.15
HDAC9-211ENST00000430454 GAPVD1Q14C86 1478 aa15.98■□□□□ 0.15
HDAC9-211ENST00000430454 RIMBP3CA6NJZ7 1639 aa15.97■□□□□ 0.15
HDAC9-211ENST00000430454 RIMBP3BA6NNM3 1639 aa15.97■□□□□ 0.15
HDAC9-211ENST00000430454 RIMBP3Q9UFD9 1639 aa15.97■□□□□ 0.15
HDAC9-211ENST00000430454 SYNJ2O15056 1496 aa15.96■□□□□ 0.14
HDAC9-211ENST00000430454 ARHGEF11O15085 1522 aa15.95■□□□□ 0.14
HDAC9-211ENST00000430454 TOP2BQ02880 1626 aa15.94■□□□□ 0.14
HDAC9-211ENST00000430454 SYNJ1O43426 1573 aa15.94■□□□□ 0.14
HDAC9-211ENST00000430454 BIVM-ERCC5R4GMW8 1640 aa15.92■□□□□ 0.14
HDAC9-211ENST00000430454 ABCA5Q8WWZ7 1642 aa15.9■□□□□ 0.14
HDAC9-211ENST00000430454 PBRM1Q86U86 1689 aa15.89■□□□□ 0.13
HDAC9-211ENST00000430454 CYB5RLQ6IPT4 315 aa15.89■□□□□ 0.13
HDAC9-211ENST00000430454 CLASP1Q7Z460 1538 aa15.84■□□□□ 0.13
HDAC9-211ENST00000430454 FHAD1B1AJZ9 1412 aa15.82■□□□□ 0.12
HDAC9-211ENST00000430454 ERICH3Q5RHP9 1530 aa15.81■□□□□ 0.12
HDAC9-211ENST00000430454 GRIN2AQ12879 1464 aa15.79■□□□□ 0.12
HDAC9-211ENST00000430454 ARAP1Q96P48 1450 aa15.78■□□□□ 0.12
HDAC9-211ENST00000430454 ADAMTS12P58397 1594 aa15.78■□□□□ 0.12
HDAC9-211ENST00000430454 KIF27Q86VH2 1401 aa15.73■□□□□ 0.11
HDAC9-211ENST00000430454 NUP160Q12769 1436 aa15.72■□□□□ 0.11
HDAC9-211ENST00000430454 TRHP20396 242 aaPredicted RBP15.71■□□□□ 0.11
HDAC9-211ENST00000430454 CEP170Q5SW79 1584 aa15.66■□□□□ 0.1
HDAC9-211ENST00000430454 IGF1RP08069 1367 aa15.62■□□□□ 0.09
HDAC9-211ENST00000430454 JPH4Q96JJ6 628 aa15.62■□□□□ 0.09
HDAC9-211ENST00000430454 CUL7Q14999 1698 aa15.62■□□□□ 0.09
HDAC9-211ENST00000430454 SHROOM2Q13796 1616 aa15.61■□□□□ 0.09
HDAC9-211ENST00000430454 PRG4Q92954 1404 aaPredicted RBP15.59■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms