RNA–Protein interactions for RNA: ENST00000430200.1

HDAC4-202, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 578 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-202ENST00000430200 NISCHQ9Y2I1 1504 aa29.82■■■□□ 2.36
HDAC4-202ENST00000430200 CCDC180Q9P1Z9 1646 aa26.81■■□□□ 1.88
HDAC4-202ENST00000430200 ABCC9O60706 1549 aa26.5■■□□□ 1.83
HDAC4-202ENST00000430200 RB1CC1Q8TDY2 1594 aa25.3■■□□□ 1.64
HDAC4-202ENST00000430200 NACADO15069 1562 aa25.15■■□□□ 1.62
HDAC4-202ENST00000430200 UNC13AQ9UPW8 1703 aa25.05■■□□□ 1.6
HDAC4-202ENST00000430200 MYO15BQ96JP2 1530 aa24.85■■□□□ 1.57
HDAC4-202ENST00000430200 ZCCHC6Q5VYS8 1495 aaKnown RBP24.82■■□□□ 1.56
HDAC4-202ENST00000430200 DCAF8L2P0C7V8 631 aa24.79■■□□□ 1.56
HDAC4-202ENST00000430200 BICRAQ9NZM4 1560 aa24.72■■□□□ 1.55
HDAC4-202ENST00000430200 DNAJC5BQ9UF47 199 aa24.66■■□□□ 1.54
HDAC4-202ENST00000430200 DCAF1Q9Y4B6 1507 aa24.63■■□□□ 1.53
HDAC4-202ENST00000430200 PABPN1Q86U42 306 aaKnown RBP eCLIP24.58■■□□□ 1.53
HDAC4-202ENST00000430200 SCRIBQ14160 1630 aa24.44■■□□□ 1.5
HDAC4-202ENST00000430200 SHROOM4Q9ULL8 1493 aa24.2■■□□□ 1.47
HDAC4-202ENST00000430200 CC2D2AQ9P2K1 1620 aa24.03■■□□□ 1.44
HDAC4-202ENST00000430200 EIF4G1Q04637 1599 aaKnown RBP24.01■■□□□ 1.43
HDAC4-202ENST00000430200 CECR2Q9BXF3 1484 aa23.81■■□□□ 1.4
HDAC4-202ENST00000430200 SMARCA4P51532 1647 aa23.32■■□□□ 1.32
HDAC4-202ENST00000430200 ATAD2BQ9ULI0 1458 aa23.17■■□□□ 1.3
HDAC4-202ENST00000430200 NCAPD3P42695 1498 aa23.17■■□□□ 1.3
HDAC4-202ENST00000430200 HMGXB3Q12766 1538 aa23.13■■□□□ 1.29
HDAC4-202ENST00000430200 BAZ1AQ9NRL2 1556 aaPredicted RBP23.12■■□□□ 1.29
HDAC4-202ENST00000430200 SMARCA2P51531 1590 aa23.11■■□□□ 1.29
HDAC4-202ENST00000430200 PEG3Q9GZU2 1588 aa23.06■■□□□ 1.28
HDAC4-202ENST00000430200 MROH2BQ7Z745 1585 aa23.04■■□□□ 1.28
HDAC4-202ENST00000430200 BAZ1BQ9UIG0 1483 aaKnown RBP22.95■■□□□ 1.26
HDAC4-202ENST00000430200 NESP48681 1621 aa22.9■■□□□ 1.26
HDAC4-202ENST00000430200 WIZO95785 1651 aa22.84■■□□□ 1.25
HDAC4-202ENST00000430200 ERCC6Q03468 1493 aa22.77■■□□□ 1.24
HDAC4-202ENST00000430200 KIF21AQ7Z4S6 1674 aa22.74■■□□□ 1.23
HDAC4-202ENST00000430200 THOC2Q8NI27 1593 aaKnown RBP22.72■■□□□ 1.23
HDAC4-202ENST00000430200 CUX2O14529 1486 aa22.71■■□□□ 1.23
HDAC4-202ENST00000430200 LAMC3Q9Y6N6 1575 aa22.7■■□□□ 1.22
HDAC4-202ENST00000430200 RSF1Q96T23 1441 aaPredicted RBP22.54■■□□□ 1.2
HDAC4-202ENST00000430200 TOP2AP11388 1531 aaKnown RBP22.49■■□□□ 1.19
HDAC4-202ENST00000430200 CADPSQ9ULU8 1353 aa22.42■■□□□ 1.18
HDAC4-202ENST00000430200 PDS5BQ9NTI5 1447 aa22.4■■□□□ 1.18
HDAC4-202ENST00000430200 DNAJC5Q9H3Z4 198 aa22.36■■□□□ 1.17
HDAC4-202ENST00000430200 PRDM2Q13029 1718 aa22.36■■□□□ 1.17
HDAC4-202ENST00000430200 WDR62O43379 1518 aa22.35■■□□□ 1.17
HDAC4-202ENST00000430200 MRC2Q9UBG0 1479 aa22.33■■□□□ 1.16
HDAC4-202ENST00000430200 CFTRP13569 1480 aa22.29■■□□□ 1.16
HDAC4-202ENST00000430200 CEP164Q9UPV0 1460 aa22.27■■□□□ 1.16
HDAC4-202ENST00000430200 FANCD2Q9BXW9 1451 aa22.26■■□□□ 1.15
HDAC4-202ENST00000430200 CCDC88BA6NC98 1476 aa22.16■■□□□ 1.14
HDAC4-202ENST00000430200 URB2Q14146 1524 aaKnown RBP22.16■■□□□ 1.14
HDAC4-202ENST00000430200 TOPBP1Q92547 1522 aa21.9■■□□□ 1.1
HDAC4-202ENST00000430200 DNMBPQ6XZF7 1577 aa21.87■■□□□ 1.09
HDAC4-202ENST00000430200 ZNF608Q9ULD9 1512 aaPredicted RBP21.84■■□□□ 1.09
HDAC4-202ENST00000430200 EIF4G3O43432 1585 aaKnown RBP21.82■■□□□ 1.08
HDAC4-202ENST00000430200 TARBP1Q13395 1621 aaKnown RBP21.8■■□□□ 1.08
HDAC4-202ENST00000430200 IFT140Q96RY7 1462 aa21.77■■□□□ 1.08
HDAC4-202ENST00000430200 ABCC8Q09428 1581 aa21.7■■□□□ 1.06
HDAC4-202ENST00000430200 POLA1P09884 1462 aaPredicted RBP21.7■■□□□ 1.06
HDAC4-202ENST00000430200 CHD1O14646 1710 aa21.68■■□□□ 1.06
HDAC4-202ENST00000430200 CUX1P39880 1505 aa21.65■■□□□ 1.06
HDAC4-202ENST00000430200 WDR97A6NE52 1622 aa21.63■■□□□ 1.05
HDAC4-202ENST00000430200 RAD54L2Q9Y4B4 1467 aa21.6■■□□□ 1.05
HDAC4-202ENST00000430200 FGD5Q6ZNL6 1462 aa21.58■■□□□ 1.05
HDAC4-202ENST00000430200 AQRO60306 1485 aaKnown RBP eCLIP21.57■■□□□ 1.04
HDAC4-202ENST00000430200 RIMBP3CA6NJZ7 1639 aa21.56■■□□□ 1.04
HDAC4-202ENST00000430200 RIMBP3BA6NNM3 1639 aa21.56■■□□□ 1.04
HDAC4-202ENST00000430200 RIMBP3Q9UFD9 1639 aa21.56■■□□□ 1.04
HDAC4-202ENST00000430200 SUPT5HO00267 1087 aaKnown RBP21.5■■□□□ 1.03
HDAC4-202ENST00000430200 OSCARQ8IYS5 282 aa21.5■■□□□ 1.03
HDAC4-202ENST00000430200 PBRM1Q86U86 1689 aa21.49■■□□□ 1.03
HDAC4-202ENST00000430200 TRIM41Q8WV44 630 aa21.47■■□□□ 1.03
HDAC4-202ENST00000430200 SOGA1O94964 1423 aa21.46■■□□□ 1.03
HDAC4-202ENST00000430200 ARHGEF11O15085 1522 aa21.44■■□□□ 1.02
HDAC4-202ENST00000430200 SNAPC4Q5SXM2 1469 aa21.42■■□□□ 1.02
HDAC4-202ENST00000430200 TDRD9Q8NDG6 1382 aaKnown RBP21.42■■□□□ 1.02
HDAC4-202ENST00000430200 ABCA5Q8WWZ7 1642 aa21.42■■□□□ 1.02
HDAC4-202ENST00000430200 BIVM-ERCC5R4GMW8 1640 aa21.41■■□□□ 1.02
HDAC4-202ENST00000430200 SYNJ1O43426 1573 aa21.39■■□□□ 1.01
HDAC4-202ENST00000430200 CLASP1Q7Z460 1538 aa21.34■■□□□ 1.01
HDAC4-202ENST00000430200 TOP2BQ02880 1626 aa21.33■■□□□ 1.01
HDAC4-202ENST00000430200 ABCA10Q8WWZ4 1543 aa21.31■■□□□ 1
HDAC4-202ENST00000430200 MAGI1Q96QZ7 1491 aaPredicted RBP21.31■■□□□ 1
HDAC4-202ENST00000430200 GRIN2BQ13224 1484 aa21.3■■□□□ 1
HDAC4-202ENST00000430200 ARAP1Q96P48 1450 aa21.26■□□□□ 0.99
HDAC4-202ENST00000430200 GAPVD1Q14C86 1478 aa21.26■□□□□ 0.99
HDAC4-202ENST00000430200 SYNJ2O15056 1496 aa21.23■□□□□ 0.99
HDAC4-202ENST00000430200 ADAMTS12P58397 1594 aa21.23■□□□□ 0.99
HDAC4-202ENST00000430200 WRNQ14191 1432 aaPredicted RBP eCLIP21.21■□□□□ 0.99
HDAC4-202ENST00000430200 FBLN2P98095 1184 aa21.21■□□□□ 0.99
HDAC4-202ENST00000430200 CEP170Q5SW79 1584 aa21.12■□□□□ 0.97
HDAC4-202ENST00000430200 GRIN2AQ12879 1464 aa21.09■□□□□ 0.97
HDAC4-202ENST00000430200 ERCC6L2Q5T890 1561 aa21.07■□□□□ 0.96
HDAC4-202ENST00000430200 CHMP7Q8WUX9 453 aaPredicted RBP21.06■□□□□ 0.96
HDAC4-202ENST00000430200 ERICH3Q5RHP9 1530 aa21.04■□□□□ 0.96
HDAC4-202ENST00000430200 CYB5RLQ6IPT4 315 aa21.04■□□□□ 0.96
HDAC4-202ENST00000430200 SHROOM2Q13796 1616 aa21.03■□□□□ 0.96
HDAC4-202ENST00000430200 NUP160Q12769 1436 aa21.01■□□□□ 0.95
HDAC4-202ENST00000430200 FHAD1B1AJZ9 1412 aa20.96■□□□□ 0.95
HDAC4-202ENST00000430200 RUSC2Q8N2Y8 1516 aa20.95■□□□□ 0.94
HDAC4-202ENST00000430200 CUL7Q14999 1698 aa20.85■□□□□ 0.93
HDAC4-202ENST00000430200 KIF27Q86VH2 1401 aa20.73■□□□□ 0.91
HDAC4-202ENST00000430200 IGF1RP08069 1367 aa20.72■□□□□ 0.91
HDAC4-202ENST00000430200 KIF13AQ9H1H9 1805 aa20.72■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms