RNA–Protein interactions for RNA: ENST00000430071.6

UBE3D-204, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 5

Gene UBE3D, Length 1,352 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-204ENST00000430071 NISCHQ9Y2I1 1504 aa41.96■■■■■ 4.31
UBE3D-204ENST00000430071 CCDC180Q9P1Z9 1646 aa37.48■■■■□ 3.59
UBE3D-204ENST00000430071 ABCC9O60706 1549 aa37.17■■■■□ 3.54
UBE3D-204ENST00000430071 RB1CC1Q8TDY2 1594 aa35.45■■■■□ 3.27
UBE3D-204ENST00000430071 NACADO15069 1562 aa35.29■■■■□ 3.24
UBE3D-204ENST00000430071 DCAF8L2P0C7V8 631 aa35.27■■■■□ 3.24
UBE3D-204ENST00000430071 UNC13AQ9UPW8 1703 aa34.93■■■■□ 3.18
UBE3D-204ENST00000430071 MYO15BQ96JP2 1530 aa34.87■■■■□ 3.17
UBE3D-204ENST00000430071 ZCCHC6Q5VYS8 1495 aaKnown RBP34.84■■■■□ 3.17
UBE3D-204ENST00000430071 PABPN1Q86U42 306 aaKnown RBP eCLIP34.68■■■■□ 3.14
UBE3D-204ENST00000430071 DNAJC5BQ9UF47 199 aa34.62■■■■□ 3.13
UBE3D-204ENST00000430071 DCAF1Q9Y4B6 1507 aa34.59■■■■□ 3.13
UBE3D-204ENST00000430071 BICRAQ9NZM4 1560 aa34.54■■■■□ 3.12
UBE3D-204ENST00000430071 SCRIBQ14160 1630 aa34.26■■■■□ 3.08
UBE3D-204ENST00000430071 SHROOM4Q9ULL8 1493 aa33.85■■■■□ 3.01
UBE3D-204ENST00000430071 CC2D2AQ9P2K1 1620 aa33.61■■■□□ 2.97
UBE3D-204ENST00000430071 EIF4G1Q04637 1599 aaKnown RBP33.58■■■□□ 2.97
UBE3D-204ENST00000430071 CECR2Q9BXF3 1484 aa33.38■■■□□ 2.93
UBE3D-204ENST00000430071 SMARCA4P51532 1647 aa32.69■■■□□ 2.82
UBE3D-204ENST00000430071 NCAPD3P42695 1498 aa32.57■■■□□ 2.81
UBE3D-204ENST00000430071 ATAD2BQ9ULI0 1458 aa32.57■■■□□ 2.81
UBE3D-204ENST00000430071 BAZ1AQ9NRL2 1556 aaPredicted RBP32.5■■■□□ 2.79
UBE3D-204ENST00000430071 SMARCA2P51531 1590 aa32.45■■■□□ 2.79
UBE3D-204ENST00000430071 MROH2BQ7Z745 1585 aa32.41■■■□□ 2.78
UBE3D-204ENST00000430071 HMGXB3Q12766 1538 aa32.37■■■□□ 2.77
UBE3D-204ENST00000430071 PEG3Q9GZU2 1588 aa32.3■■■□□ 2.76
UBE3D-204ENST00000430071 BAZ1BQ9UIG0 1483 aaKnown RBP32.25■■■□□ 2.75
UBE3D-204ENST00000430071 WIZO95785 1651 aa32.09■■■□□ 2.73
UBE3D-204ENST00000430071 NESP48681 1621 aa32.09■■■□□ 2.73
UBE3D-204ENST00000430071 ERCC6Q03468 1493 aa31.96■■■□□ 2.71
UBE3D-204ENST00000430071 RSF1Q96T23 1441 aaPredicted RBP31.82■■■□□ 2.68
UBE3D-204ENST00000430071 LAMC3Q9Y6N6 1575 aa31.79■■■□□ 2.68
UBE3D-204ENST00000430071 CUX2O14529 1486 aa31.74■■■□□ 2.67
UBE3D-204ENST00000430071 KIF21AQ7Z4S6 1674 aa31.73■■■□□ 2.67
UBE3D-204ENST00000430071 THOC2Q8NI27 1593 aaKnown RBP31.65■■■□□ 2.66
UBE3D-204ENST00000430071 CADPSQ9ULU8 1353 aa31.6■■■□□ 2.65
UBE3D-204ENST00000430071 TOP2AP11388 1531 aaKnown RBP31.58■■■□□ 2.65
UBE3D-204ENST00000430071 PDS5BQ9NTI5 1447 aa31.54■■■□□ 2.64
UBE3D-204ENST00000430071 DNAJC5Q9H3Z4 198 aa31.35■■■□□ 2.61
UBE3D-204ENST00000430071 CFTRP13569 1480 aa31.34■■■□□ 2.61
UBE3D-204ENST00000430071 MRC2Q9UBG0 1479 aa31.3■■■□□ 2.6
UBE3D-204ENST00000430071 FANCD2Q9BXW9 1451 aa31.28■■■□□ 2.6
UBE3D-204ENST00000430071 CCDC88BA6NC98 1476 aa31.26■■■□□ 2.59
UBE3D-204ENST00000430071 CEP164Q9UPV0 1460 aa31.25■■■□□ 2.59
UBE3D-204ENST00000430071 WDR62O43379 1518 aa31.23■■■□□ 2.59
UBE3D-204ENST00000430071 PRDM2Q13029 1718 aa31.21■■■□□ 2.59
UBE3D-204ENST00000430071 URB2Q14146 1524 aaKnown RBP31.06■■■□□ 2.56
UBE3D-204ENST00000430071 TOPBP1Q92547 1522 aa30.76■■■□□ 2.52
UBE3D-204ENST00000430071 SUPT5HO00267 1087 aaKnown RBP30.74■■■□□ 2.51
UBE3D-204ENST00000430071 DNMBPQ6XZF7 1577 aa30.66■■■□□ 2.5
UBE3D-204ENST00000430071 ZNF608Q9ULD9 1512 aaPredicted RBP30.63■■■□□ 2.49
UBE3D-204ENST00000430071 IFT140Q96RY7 1462 aa30.59■■■□□ 2.49
UBE3D-204ENST00000430071 ABCC8Q09428 1581 aa30.58■■■□□ 2.49
UBE3D-204ENST00000430071 TARBP1Q13395 1621 aaKnown RBP30.5■■■□□ 2.47
UBE3D-204ENST00000430071 POLA1P09884 1462 aaPredicted RBP30.47■■■□□ 2.47
UBE3D-204ENST00000430071 EIF4G3O43432 1585 aaKnown RBP30.46■■■□□ 2.47
UBE3D-204ENST00000430071 CUX1P39880 1505 aa30.41■■■□□ 2.46
UBE3D-204ENST00000430071 RAD54L2Q9Y4B4 1467 aa30.4■■■□□ 2.46
UBE3D-204ENST00000430071 AQRO60306 1485 aaKnown RBP eCLIP30.39■■■□□ 2.45
UBE3D-204ENST00000430071 OSCARQ8IYS5 282 aa30.37■■■□□ 2.45
UBE3D-204ENST00000430071 FGD5Q6ZNL6 1462 aa30.34■■■□□ 2.45
UBE3D-204ENST00000430071 SOGA1O94964 1423 aa30.3■■■□□ 2.44
UBE3D-204ENST00000430071 CHD1O14646 1710 aa30.26■■■□□ 2.43
UBE3D-204ENST00000430071 TDRD9Q8NDG6 1382 aaKnown RBP30.24■■■□□ 2.43
UBE3D-204ENST00000430071 TRIM41Q8WV44 630 aa30.18■■■□□ 2.42
UBE3D-204ENST00000430071 WDR97A6NE52 1622 aa30.18■■■□□ 2.42
UBE3D-204ENST00000430071 RIMBP3CA6NJZ7 1639 aa30.08■■■□□ 2.41
UBE3D-204ENST00000430071 RIMBP3BA6NNM3 1639 aa30.08■■■□□ 2.41
UBE3D-204ENST00000430071 RIMBP3Q9UFD9 1639 aa30.08■■■□□ 2.41
UBE3D-204ENST00000430071 FBLN2P98095 1184 aa30.05■■■□□ 2.4
UBE3D-204ENST00000430071 SNAPC4Q5SXM2 1469 aa30.05■■■□□ 2.4
UBE3D-204ENST00000430071 SYNJ1O43426 1573 aa30.03■■■□□ 2.4
UBE3D-204ENST00000430071 PBRM1Q86U86 1689 aa30.03■■■□□ 2.4
UBE3D-204ENST00000430071 BIVM-ERCC5R4GMW8 1640 aa30.03■■■□□ 2.4
UBE3D-204ENST00000430071 TOP2BQ02880 1626 aa29.99■■■□□ 2.39
UBE3D-204ENST00000430071 ABCA10Q8WWZ4 1543 aa29.97■■■□□ 2.39
UBE3D-204ENST00000430071 GRIN2BQ13224 1484 aa29.96■■■□□ 2.39
UBE3D-204ENST00000430071 ABCA5Q8WWZ7 1642 aa29.96■■■□□ 2.39
UBE3D-204ENST00000430071 WRNQ14191 1432 aaPredicted RBP eCLIP29.96■■■□□ 2.39
UBE3D-204ENST00000430071 ARHGEF11O15085 1522 aa29.96■■■□□ 2.39
UBE3D-204ENST00000430071 GAPVD1Q14C86 1478 aa29.95■■■□□ 2.38
UBE3D-204ENST00000430071 MAGI1Q96QZ7 1491 aaPredicted RBP29.91■■■□□ 2.38
UBE3D-204ENST00000430071 CHMP7Q8WUX9 453 aaPredicted RBP29.84■■■□□ 2.37
UBE3D-204ENST00000430071 SYNJ2O15056 1496 aa29.83■■■□□ 2.37
UBE3D-204ENST00000430071 CLASP1Q7Z460 1538 aa29.8■■■□□ 2.36
UBE3D-204ENST00000430071 ARAP1Q96P48 1450 aa29.71■■■□□ 2.35
UBE3D-204ENST00000430071 CYB5RLQ6IPT4 315 aa29.71■■■□□ 2.35
UBE3D-204ENST00000430071 ADAMTS12P58397 1594 aa29.69■■■□□ 2.34
UBE3D-204ENST00000430071 GRIN2AQ12879 1464 aa29.62■■■□□ 2.33
UBE3D-204ENST00000430071 ERICH3Q5RHP9 1530 aa29.58■■■□□ 2.33
UBE3D-204ENST00000430071 CEP170Q5SW79 1584 aa29.57■■■□□ 2.32
UBE3D-204ENST00000430071 FHAD1B1AJZ9 1412 aa29.54■■■□□ 2.32
UBE3D-204ENST00000430071 NUP160Q12769 1436 aa29.49■■■□□ 2.31
UBE3D-204ENST00000430071 ERCC6L2Q5T890 1561 aa29.49■■■□□ 2.31
UBE3D-204ENST00000430071 SHROOM2Q13796 1616 aa29.38■■■□□ 2.29
UBE3D-204ENST00000430071 IGF1RP08069 1367 aa29.34■■■□□ 2.29
UBE3D-204ENST00000430071 KIF27Q86VH2 1401 aa29.32■■■□□ 2.28
UBE3D-204ENST00000430071 RUSC2Q8N2Y8 1516 aa29.27■■■□□ 2.28
UBE3D-204ENST00000430071 CUL7Q14999 1698 aa29.26■■■□□ 2.27
UBE3D-204ENST00000430071 TRHP20396 242 aaPredicted RBP29.22■■■□□ 2.27
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms