RNA–Protein interactions for RNA: ENST00000430038.5

CPSF4-203, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 5

Gene CPSF4, Length 735 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-203ENST00000430038 NISCHQ9Y2I1 1504 aa42.81■■■■■ 4.44
CPSF4-203ENST00000430038 CCDC180Q9P1Z9 1646 aa38.25■■■■□ 3.71
CPSF4-203ENST00000430038 ABCC9O60706 1549 aa38.16■■■■□ 3.7
CPSF4-203ENST00000430038 RB1CC1Q8TDY2 1594 aa36.3■■■■□ 3.4
CPSF4-203ENST00000430038 NACADO15069 1562 aa36.1■■■■□ 3.37
CPSF4-203ENST00000430038 DCAF8L2P0C7V8 631 aa36.05■■■■□ 3.36
CPSF4-203ENST00000430038 DNAJC5BQ9UF47 199 aa35.79■■■■□ 3.32
CPSF4-203ENST00000430038 UNC13AQ9UPW8 1703 aa35.69■■■■□ 3.3
CPSF4-203ENST00000430038 MYO15BQ96JP2 1530 aa35.66■■■■□ 3.3
CPSF4-203ENST00000430038 PABPN1Q86U42 306 aaKnown RBP eCLIP35.61■■■■□ 3.29
CPSF4-203ENST00000430038 ZCCHC6Q5VYS8 1495 aaKnown RBP35.5■■■■□ 3.27
CPSF4-203ENST00000430038 BICRAQ9NZM4 1560 aa35.41■■■■□ 3.26
CPSF4-203ENST00000430038 DCAF1Q9Y4B6 1507 aa35.3■■■■□ 3.24
CPSF4-203ENST00000430038 SCRIBQ14160 1630 aa34.95■■■■□ 3.18
CPSF4-203ENST00000430038 SHROOM4Q9ULL8 1493 aa34.68■■■■□ 3.14
CPSF4-203ENST00000430038 CC2D2AQ9P2K1 1620 aa34.48■■■■□ 3.11
CPSF4-203ENST00000430038 EIF4G1Q04637 1599 aaKnown RBP34.43■■■■□ 3.1
CPSF4-203ENST00000430038 CECR2Q9BXF3 1484 aa34.3■■■■□ 3.08
CPSF4-203ENST00000430038 NCAPD3P42695 1498 aa33.38■■■□□ 2.93
CPSF4-203ENST00000430038 SMARCA4P51532 1647 aa33.35■■■□□ 2.93
CPSF4-203ENST00000430038 ATAD2BQ9ULI0 1458 aa33.33■■■□□ 2.93
CPSF4-203ENST00000430038 SMARCA2P51531 1590 aa33.16■■■□□ 2.9
CPSF4-203ENST00000430038 BAZ1AQ9NRL2 1556 aaPredicted RBP33.13■■■□□ 2.89
CPSF4-203ENST00000430038 HMGXB3Q12766 1538 aa33.1■■■□□ 2.89
CPSF4-203ENST00000430038 MROH2BQ7Z745 1585 aa33.05■■■□□ 2.88
CPSF4-203ENST00000430038 PEG3Q9GZU2 1588 aa33■■■□□ 2.87
CPSF4-203ENST00000430038 BAZ1BQ9UIG0 1483 aaKnown RBP32.95■■■□□ 2.87
CPSF4-203ENST00000430038 NESP48681 1621 aa32.91■■■□□ 2.86
CPSF4-203ENST00000430038 ERCC6Q03468 1493 aa32.8■■■□□ 2.84
CPSF4-203ENST00000430038 CUX2O14529 1486 aa32.68■■■□□ 2.82
CPSF4-203ENST00000430038 WIZO95785 1651 aa32.68■■■□□ 2.82
CPSF4-203ENST00000430038 DNAJC5Q9H3Z4 198 aa32.56■■■□□ 2.8
CPSF4-203ENST00000430038 LAMC3Q9Y6N6 1575 aa32.54■■■□□ 2.8
CPSF4-203ENST00000430038 KIF21AQ7Z4S6 1674 aa32.46■■■□□ 2.79
CPSF4-203ENST00000430038 THOC2Q8NI27 1593 aaKnown RBP32.45■■■□□ 2.79
CPSF4-203ENST00000430038 RSF1Q96T23 1441 aaPredicted RBP32.41■■■□□ 2.78
CPSF4-203ENST00000430038 CADPSQ9ULU8 1353 aa32.37■■■□□ 2.77
CPSF4-203ENST00000430038 PDS5BQ9NTI5 1447 aa32.32■■■□□ 2.76
CPSF4-203ENST00000430038 TOP2AP11388 1531 aaKnown RBP32.16■■■□□ 2.74
CPSF4-203ENST00000430038 MRC2Q9UBG0 1479 aa32.07■■■□□ 2.72
CPSF4-203ENST00000430038 CFTRP13569 1480 aa32.05■■■□□ 2.72
CPSF4-203ENST00000430038 WDR62O43379 1518 aa32.01■■■□□ 2.72
CPSF4-203ENST00000430038 FANCD2Q9BXW9 1451 aa32■■■□□ 2.71
CPSF4-203ENST00000430038 CEP164Q9UPV0 1460 aa31.97■■■□□ 2.71
CPSF4-203ENST00000430038 CCDC88BA6NC98 1476 aa31.87■■■□□ 2.69
CPSF4-203ENST00000430038 URB2Q14146 1524 aaKnown RBP31.8■■■□□ 2.68
CPSF4-203ENST00000430038 PRDM2Q13029 1718 aa31.75■■■□□ 2.67
CPSF4-203ENST00000430038 TOPBP1Q92547 1522 aa31.44■■■□□ 2.62
CPSF4-203ENST00000430038 ZNF608Q9ULD9 1512 aaPredicted RBP31.39■■■□□ 2.62
CPSF4-203ENST00000430038 IFT140Q96RY7 1462 aa31.33■■■□□ 2.61
CPSF4-203ENST00000430038 DNMBPQ6XZF7 1577 aa31.3■■■□□ 2.6
CPSF4-203ENST00000430038 OSCARQ8IYS5 282 aa31.27■■■□□ 2.6
CPSF4-203ENST00000430038 ABCC8Q09428 1581 aa31.26■■■□□ 2.59
CPSF4-203ENST00000430038 TRIM41Q8WV44 630 aa31.19■■■□□ 2.58
CPSF4-203ENST00000430038 TARBP1Q13395 1621 aaKnown RBP31.19■■■□□ 2.58
CPSF4-203ENST00000430038 EIF4G3O43432 1585 aaKnown RBP31.15■■■□□ 2.58
CPSF4-203ENST00000430038 POLA1P09884 1462 aaPredicted RBP31.14■■■□□ 2.57
CPSF4-203ENST00000430038 SUPT5HO00267 1087 aaKnown RBP31.13■■■□□ 2.57
CPSF4-203ENST00000430038 AQRO60306 1485 aaKnown RBP eCLIP31.12■■■□□ 2.573e-8■■■■■ 48.5
CPSF4-203ENST00000430038 RAD54L2Q9Y4B4 1467 aa31.08■■■□□ 2.57
CPSF4-203ENST00000430038 CUX1P39880 1505 aa31.02■■■□□ 2.56
CPSF4-203ENST00000430038 SOGA1O94964 1423 aa30.98■■■□□ 2.55
CPSF4-203ENST00000430038 FGD5Q6ZNL6 1462 aa30.96■■■□□ 2.55
CPSF4-203ENST00000430038 TDRD9Q8NDG6 1382 aaKnown RBP30.94■■■□□ 2.54
CPSF4-203ENST00000430038 CHD1O14646 1710 aa30.94■■■□□ 2.54
CPSF4-203ENST00000430038 RIMBP3CA6NJZ7 1639 aa30.91■■■□□ 2.54
CPSF4-203ENST00000430038 RIMBP3BA6NNM3 1639 aa30.91■■■□□ 2.54
CPSF4-203ENST00000430038 RIMBP3Q9UFD9 1639 aa30.91■■■□□ 2.54
CPSF4-203ENST00000430038 ARHGEF11O15085 1522 aa30.8■■■□□ 2.52
CPSF4-203ENST00000430038 FBLN2P98095 1184 aa30.8■■■□□ 2.52
CPSF4-203ENST00000430038 WDR97A6NE52 1622 aa30.76■■■□□ 2.52
CPSF4-203ENST00000430038 SNAPC4Q5SXM2 1469 aa30.74■■■□□ 2.51
CPSF4-203ENST00000430038 GRIN2BQ13224 1484 aa30.64■■■□□ 2.5
CPSF4-203ENST00000430038 PBRM1Q86U86 1689 aa30.61■■■□□ 2.49
CPSF4-203ENST00000430038 ABCA10Q8WWZ4 1543 aa30.6■■■□□ 2.49
CPSF4-203ENST00000430038 MAGI1Q96QZ7 1491 aaPredicted RBP30.6■■■□□ 2.49
CPSF4-203ENST00000430038 GAPVD1Q14C86 1478 aa30.59■■■□□ 2.49
CPSF4-203ENST00000430038 CYB5RLQ6IPT4 315 aa30.59■■■□□ 2.49
CPSF4-203ENST00000430038 CHMP7Q8WUX9 453 aaPredicted RBP30.57■■■□□ 2.48
CPSF4-203ENST00000430038 ABCA5Q8WWZ7 1642 aa30.57■■■□□ 2.48
CPSF4-203ENST00000430038 SYNJ1O43426 1573 aa30.55■■■□□ 2.48
CPSF4-203ENST00000430038 CLASP1Q7Z460 1538 aa30.55■■■□□ 2.48
CPSF4-203ENST00000430038 ARAP1Q96P48 1450 aa30.55■■■□□ 2.48
CPSF4-203ENST00000430038 SYNJ2O15056 1496 aa30.53■■■□□ 2.48
CPSF4-203ENST00000430038 BIVM-ERCC5R4GMW8 1640 aa30.53■■■□□ 2.48
CPSF4-203ENST00000430038 TOP2BQ02880 1626 aa30.52■■■□□ 2.48
CPSF4-203ENST00000430038 WRNQ14191 1432 aaPredicted RBP eCLIP30.49■■■□□ 2.47
CPSF4-203ENST00000430038 ADAMTS12P58397 1594 aa30.29■■■□□ 2.44
CPSF4-203ENST00000430038 GRIN2AQ12879 1464 aa30.28■■■□□ 2.44
CPSF4-203ENST00000430038 CEP170Q5SW79 1584 aa30.23■■■□□ 2.43
CPSF4-203ENST00000430038 ERCC6L2Q5T890 1561 aa30.2■■■□□ 2.43
CPSF4-203ENST00000430038 ERICH3Q5RHP9 1530 aa30.19■■■□□ 2.42
CPSF4-203ENST00000430038 FHAD1B1AJZ9 1412 aa30.19■■■□□ 2.42
CPSF4-203ENST00000430038 NUP160Q12769 1436 aa30.19■■■□□ 2.42
CPSF4-203ENST00000430038 TRHP20396 242 aaPredicted RBP30.11■■■□□ 2.41
CPSF4-203ENST00000430038 SHROOM2Q13796 1616 aa30.06■■■□□ 2.4
CPSF4-203ENST00000430038 IGF1RP08069 1367 aa29.95■■■□□ 2.39
CPSF4-203ENST00000430038 JPH4Q96JJ6 628 aa29.89■■■□□ 2.38
CPSF4-203ENST00000430038 PRG4Q92954 1404 aaPredicted RBP29.88■■■□□ 2.37
CPSF4-203ENST00000430038 RUSC2Q8N2Y8 1516 aa29.87■■■□□ 2.37
Retrieved 100 of 20,778 RNA–protein pairs in 137.2 ms