RNA–Protein interactions for RNA: ENST00000429812.5

PDLIM2-210, Transcript of PDZ and LIM domain 2, humanhuman

TSL 2

Gene PDLIM2, Length 728 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-210ENST00000429812 NISCHQ9Y2I1 1504 aa44.49■■■■■ 4.71
PDLIM2-210ENST00000429812 ABCC9O60706 1549 aa39.92■■■■□ 3.98
PDLIM2-210ENST00000429812 CCDC180Q9P1Z9 1646 aa39.76■■■■□ 3.95
PDLIM2-210ENST00000429812 RB1CC1Q8TDY2 1594 aa37.87■■■■□ 3.65
PDLIM2-210ENST00000429812 DCAF8L2P0C7V8 631 aa37.73■■■■□ 3.63
PDLIM2-210ENST00000429812 NACADO15069 1562 aa37.61■■■■□ 3.61
PDLIM2-210ENST00000429812 DNAJC5BQ9UF47 199 aa37.45■■■■□ 3.59
PDLIM2-210ENST00000429812 PABPN1Q86U42 306 aaKnown RBP eCLIP37.26■■■■□ 3.56
PDLIM2-210ENST00000429812 MYO15BQ96JP2 1530 aa37.05■■■■□ 3.52
PDLIM2-210ENST00000429812 UNC13AQ9UPW8 1703 aa37.05■■■■□ 3.52
PDLIM2-210ENST00000429812 ZCCHC6Q5VYS8 1495 aaKnown RBP36.88■■■■□ 3.5
PDLIM2-210ENST00000429812 BICRAQ9NZM4 1560 aa36.84■■■■□ 3.49
PDLIM2-210ENST00000429812 DCAF1Q9Y4B6 1507 aa36.64■■■■□ 3.46
PDLIM2-210ENST00000429812 SCRIBQ14160 1630 aa36.43■■■■□ 3.42
PDLIM2-210ENST00000429812 SHROOM4Q9ULL8 1493 aa36.15■■■■□ 3.38
PDLIM2-210ENST00000429812 CC2D2AQ9P2K1 1620 aa35.98■■■■□ 3.35
PDLIM2-210ENST00000429812 EIF4G1Q04637 1599 aaKnown RBP35.91■■■■□ 3.34
PDLIM2-210ENST00000429812 CECR2Q9BXF3 1484 aa35.89■■■■□ 3.34
PDLIM2-210ENST00000429812 NCAPD3P42695 1498 aa34.77■■■■□ 3.16
PDLIM2-210ENST00000429812 ATAD2BQ9ULI0 1458 aa34.72■■■■□ 3.15
PDLIM2-210ENST00000429812 SMARCA4P51532 1647 aa34.68■■■■□ 3.14
PDLIM2-210ENST00000429812 SMARCA2P51531 1590 aa34.55■■■■□ 3.12
PDLIM2-210ENST00000429812 BAZ1AQ9NRL2 1556 aaPredicted RBP34.49■■■■□ 3.11
PDLIM2-210ENST00000429812 HMGXB3Q12766 1538 aa34.47■■■■□ 3.11
PDLIM2-210ENST00000429812 ERCC6Q03468 1493 aa34.4■■■■□ 3.1
PDLIM2-210ENST00000429812 BAZ1BQ9UIG0 1483 aaKnown RBP34.39■■■■□ 3.1
PDLIM2-210ENST00000429812 MROH2BQ7Z745 1585 aa34.36■■■■□ 3.09
PDLIM2-210ENST00000429812 NESP48681 1621 aa34.34■■■■□ 3.09
PDLIM2-210ENST00000429812 PEG3Q9GZU2 1588 aa34.27■■■■□ 3.08
PDLIM2-210ENST00000429812 CUX2O14529 1486 aa34.2■■■■□ 3.07
PDLIM2-210ENST00000429812 DNAJC5Q9H3Z4 198 aa34.19■■■■□ 3.06
PDLIM2-210ENST00000429812 WIZO95785 1651 aa33.94■■■■□ 3.02
PDLIM2-210ENST00000429812 LAMC3Q9Y6N6 1575 aa33.93■■■■□ 3.02
PDLIM2-210ENST00000429812 THOC2Q8NI27 1593 aaKnown RBP33.85■■■■□ 3.01
PDLIM2-210ENST00000429812 KIF21AQ7Z4S6 1674 aa33.8■■■■□ 3
PDLIM2-210ENST00000429812 PDS5BQ9NTI5 1447 aa33.77■■■■□ 3
PDLIM2-210ENST00000429812 CADPSQ9ULU8 1353 aa33.75■■■□□ 2.99
PDLIM2-210ENST00000429812 RSF1Q96T23 1441 aaPredicted RBP33.67■■■□□ 2.98
PDLIM2-210ENST00000429812 MRC2Q9UBG0 1479 aa33.5■■■□□ 2.95
PDLIM2-210ENST00000429812 TOP2AP11388 1531 aaKnown RBP33.44■■■□□ 2.94
PDLIM2-210ENST00000429812 FANCD2Q9BXW9 1451 aa33.39■■■□□ 2.94
PDLIM2-210ENST00000429812 CEP164Q9UPV0 1460 aa33.39■■■□□ 2.94
PDLIM2-210ENST00000429812 WDR62O43379 1518 aa33.38■■■□□ 2.93
PDLIM2-210ENST00000429812 CFTRP13569 1480 aa33.37■■■□□ 2.93
PDLIM2-210ENST00000429812 URB2Q14146 1524 aaKnown RBP33.14■■■□□ 2.9
PDLIM2-210ENST00000429812 CCDC88BA6NC98 1476 aa33.14■■■□□ 2.9
PDLIM2-210ENST00000429812 PRDM2Q13029 1718 aa32.93■■■□□ 2.86
PDLIM2-210ENST00000429812 TRIM41Q8WV44 630 aa32.87■■■□□ 2.85
PDLIM2-210ENST00000429812 TOPBP1Q92547 1522 aa32.77■■■□□ 2.84
PDLIM2-210ENST00000429812 ZNF608Q9ULD9 1512 aaPredicted RBP32.76■■■□□ 2.83
PDLIM2-210ENST00000429812 OSCARQ8IYS5 282 aa32.75■■■□□ 2.83
PDLIM2-210ENST00000429812 IFT140Q96RY7 1462 aa32.7■■■□□ 2.83
PDLIM2-210ENST00000429812 DNMBPQ6XZF7 1577 aa32.6■■■□□ 2.81
PDLIM2-210ENST00000429812 ABCC8Q09428 1581 aa32.57■■■□□ 2.8
PDLIM2-210ENST00000429812 EIF4G3O43432 1585 aaKnown RBP32.49■■■□□ 2.79
PDLIM2-210ENST00000429812 AQRO60306 1485 aaKnown RBP eCLIP32.48■■■□□ 2.79
PDLIM2-210ENST00000429812 POLA1P09884 1462 aaPredicted RBP32.44■■■□□ 2.78
PDLIM2-210ENST00000429812 TARBP1Q13395 1621 aaKnown RBP32.44■■■□□ 2.78
PDLIM2-210ENST00000429812 RAD54L2Q9Y4B4 1467 aa32.4■■■□□ 2.78
PDLIM2-210ENST00000429812 SUPT5HO00267 1087 aaKnown RBP32.39■■■□□ 2.78
PDLIM2-210ENST00000429812 RIMBP3CA6NJZ7 1639 aa32.31■■■□□ 2.76
PDLIM2-210ENST00000429812 RIMBP3BA6NNM3 1639 aa32.31■■■□□ 2.76
PDLIM2-210ENST00000429812 RIMBP3Q9UFD9 1639 aa32.31■■■□□ 2.76
PDLIM2-210ENST00000429812 SOGA1O94964 1423 aa32.31■■■□□ 2.76
PDLIM2-210ENST00000429812 TDRD9Q8NDG6 1382 aaKnown RBP32.31■■■□□ 2.76
PDLIM2-210ENST00000429812 FBLN2P98095 1184 aa32.29■■■□□ 2.76
PDLIM2-210ENST00000429812 FGD5Q6ZNL6 1462 aa32.27■■■□□ 2.76
PDLIM2-210ENST00000429812 CUX1P39880 1505 aa32.26■■■□□ 2.76
PDLIM2-210ENST00000429812 CHD1O14646 1710 aa32.23■■■□□ 2.75
PDLIM2-210ENST00000429812 ARHGEF11O15085 1522 aa32.22■■■□□ 2.75
PDLIM2-210ENST00000429812 SNAPC4Q5SXM2 1469 aa32.1■■■□□ 2.73
PDLIM2-210ENST00000429812 CYB5RLQ6IPT4 315 aa32.07■■■□□ 2.72
PDLIM2-210ENST00000429812 CHMP7Q8WUX9 453 aaPredicted RBP31.99■■■□□ 2.71
PDLIM2-210ENST00000429812 GRIN2BQ13224 1484 aa31.97■■■□□ 2.71
PDLIM2-210ENST00000429812 WDR97A6NE52 1622 aa31.96■■■□□ 2.71
PDLIM2-210ENST00000429812 ARAP1Q96P48 1450 aa31.94■■■□□ 2.7
PDLIM2-210ENST00000429812 MAGI1Q96QZ7 1491 aaPredicted RBP31.92■■■□□ 2.7
PDLIM2-210ENST00000429812 GAPVD1Q14C86 1478 aa31.9■■■□□ 2.7
PDLIM2-210ENST00000429812 CLASP1Q7Z460 1538 aa31.85■■■□□ 2.69
PDLIM2-210ENST00000429812 ABCA10Q8WWZ4 1543 aa31.85■■■□□ 2.69
PDLIM2-210ENST00000429812 SYNJ2O15056 1496 aa31.84■■■□□ 2.69
PDLIM2-210ENST00000429812 PBRM1Q86U86 1689 aa31.83■■■□□ 2.69
PDLIM2-210ENST00000429812 SYNJ1O43426 1573 aa31.81■■■□□ 2.68
PDLIM2-210ENST00000429812 ABCA5Q8WWZ7 1642 aa31.78■■■□□ 2.68
PDLIM2-210ENST00000429812 WRNQ14191 1432 aaPredicted RBP eCLIP31.75■■■□□ 2.67
PDLIM2-210ENST00000429812 TOP2BQ02880 1626 aa31.69■■■□□ 2.66
PDLIM2-210ENST00000429812 TRHP20396 242 aaPredicted RBP31.69■■■□□ 2.66
PDLIM2-210ENST00000429812 BIVM-ERCC5R4GMW8 1640 aa31.67■■■□□ 2.66
PDLIM2-210ENST00000429812 GRIN2AQ12879 1464 aa31.58■■■□□ 2.65
PDLIM2-210ENST00000429812 ADAMTS12P58397 1594 aa31.56■■■□□ 2.64
PDLIM2-210ENST00000429812 CEP170Q5SW79 1584 aa31.48■■■□□ 2.63
PDLIM2-210ENST00000429812 ERCC6L2Q5T890 1561 aa31.48■■■□□ 2.63
PDLIM2-210ENST00000429812 FHAD1B1AJZ9 1412 aa31.48■■■□□ 2.63
PDLIM2-210ENST00000429812 NUP160Q12769 1436 aa31.45■■■□□ 2.63
PDLIM2-210ENST00000429812 ERICH3Q5RHP9 1530 aa31.41■■■□□ 2.62
PDLIM2-210ENST00000429812 SHROOM2Q13796 1616 aa31.26■■■□□ 2.59
PDLIM2-210ENST00000429812 PRG4Q92954 1404 aaPredicted RBP31.2■■■□□ 2.59
PDLIM2-210ENST00000429812 JPH4Q96JJ6 628 aa31.19■■■□□ 2.58
PDLIM2-210ENST00000429812 IGF1RP08069 1367 aa31.14■■■□□ 2.58
PDLIM2-210ENST00000429812 RUSC2Q8N2Y8 1516 aa31.1■■■□□ 2.57
Retrieved 100 of 20,778 RNA–protein pairs in 80.7 ms