RNA–Protein interactions for RNA: ENST00000429162.2

CASC4-203, Transcript of cancer susceptibility 4, humanhuman

TSL 2

Gene CASC4, Length 1,918 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASC4-203ENST00000429162 NISCHQ9Y2I1 1504 aa43.51■■■■■ 4.56
CASC4-203ENST00000429162 CCDC180Q9P1Z9 1646 aa37.72■■■■□ 3.63
CASC4-203ENST00000429162 ZCCHC6Q5VYS8 1495 aaKnown RBP36.7■■■■□ 3.47
CASC4-203ENST00000429162 DCAF1Q9Y4B6 1507 aa35.99■■■■□ 3.35
CASC4-203ENST00000429162 SHROOM4Q9ULL8 1493 aa35.91■■■■□ 3.34
CASC4-203ENST00000429162 DCAF8L2P0C7V8 631 aa35.71■■■■□ 3.31
CASC4-203ENST00000429162 MYO15BQ96JP2 1530 aa35.34■■■■□ 3.25
CASC4-203ENST00000429162 ABCC9O60706 1549 aa35.12■■■■□ 3.21
CASC4-203ENST00000429162 NACADO15069 1562 aa34.97■■■■□ 3.19
CASC4-203ENST00000429162 SUPT5HO00267 1087 aaKnown RBP34.81■■■■□ 3.16
CASC4-203ENST00000429162 SCRIBQ14160 1630 aa34.78■■■■□ 3.16
CASC4-203ENST00000429162 RB1CC1Q8TDY2 1594 aa34.55■■■■□ 3.12
CASC4-203ENST00000429162 RSF1Q96T23 1441 aaPredicted RBP33.97■■■■□ 3.03
CASC4-203ENST00000429162 UNC13AQ9UPW8 1703 aa33.88■■■■□ 3.01
CASC4-203ENST00000429162 CECR2Q9BXF3 1484 aa33.75■■■□□ 2.99
CASC4-203ENST00000429162 MROH2BQ7Z745 1585 aa33.65■■■□□ 2.98
CASC4-203ENST00000429162 CHIC1Q5VXU3 224 aa33.61■■■□□ 2.97
CASC4-203ENST00000429162 BAZ1AQ9NRL2 1556 aaPredicted RBP33.58■■■□□ 2.97
CASC4-203ENST00000429162 BICRAQ9NZM4 1560 aa33.48■■■□□ 2.95
CASC4-203ENST00000429162 WIZO95785 1651 aa33.42■■■□□ 2.94
CASC4-203ENST00000429162 SMARCA4P51532 1647 aa33.36■■■□□ 2.93
CASC4-203ENST00000429162 PABPN1Q86U42 306 aaKnown RBP eCLIP33.2■■■□□ 2.9
CASC4-203ENST00000429162 TOP2AP11388 1531 aaKnown RBP33.1■■■□□ 2.89
CASC4-203ENST00000429162 PEG3Q9GZU2 1588 aa32.91■■■□□ 2.86
CASC4-203ENST00000429162 SMARCA2P51531 1590 aa32.8■■■□□ 2.84
CASC4-203ENST00000429162 EIF4G1Q04637 1599 aaKnown RBP32.8■■■□□ 2.84
CASC4-203ENST00000429162 CCDC88BA6NC98 1476 aa32.74■■■□□ 2.83
CASC4-203ENST00000429162 TRIM41Q8WV44 630 aa32.69■■■□□ 2.82
CASC4-203ENST00000429162 ATAD2BQ9ULI0 1458 aa32.63■■■□□ 2.81
CASC4-203ENST00000429162 BAZ1BQ9UIG0 1483 aaKnown RBP32.51■■■□□ 2.8
CASC4-203ENST00000429162 LOC105371045A0A1W2PR82 267 aa32.33■■■□□ 2.77
CASC4-203ENST00000429162 HMGXB3Q12766 1538 aa32.3■■■□□ 2.76
CASC4-203ENST00000429162 ABCC8Q09428 1581 aa32.27■■■□□ 2.76
CASC4-203ENST00000429162 NCAPD3P42695 1498 aa32.23■■■□□ 2.75
CASC4-203ENST00000429162 FAM9AQ8IZU1 332 aaPredicted RBP32.12■■■□□ 2.73
CASC4-203ENST00000429162 WRNQ14191 1432 aaPredicted RBP eCLIP31.98■■■□□ 2.71
CASC4-203ENST00000429162 SYNJ1O43426 1573 aa31.85■■■□□ 2.69
CASC4-203ENST00000429162 EEA1Q15075 1411 aa31.84■■■□□ 2.69
CASC4-203ENST00000429162 CC2D2AQ9P2K1 1620 aa31.8■■■□□ 2.68
CASC4-203ENST00000429162 SOGA1O94964 1423 aa31.75■■■□□ 2.67
CASC4-203ENST00000429162 CFTRP13569 1480 aa31.7■■■□□ 2.67
CASC4-203ENST00000429162 TOP2BQ02880 1626 aa31.67■■■□□ 2.66
CASC4-203ENST00000429162 EHMT2Q96KQ7 1210 aa31.65■■■□□ 2.66
CASC4-203ENST00000429162 PRDM2Q13029 1718 aa31.64■■■□□ 2.66
CASC4-203ENST00000429162 BIVM-ERCC5R4GMW8 1640 aa31.64■■■□□ 2.66
CASC4-203ENST00000429162 RUSC2Q8N2Y8 1516 aa31.59■■■□□ 2.65
CASC4-203ENST00000429162 CSRNP3Q8WYN3 585 aa31.55■■■□□ 2.64
CASC4-203ENST00000429162 PCGF6Q9BYE7 350 aa31.49■■■□□ 2.63
CASC4-203ENST00000429162 CADPSQ9ULU8 1353 aa31.45■■■□□ 2.63
CASC4-203ENST00000429162 GOLGA3Q08378 1498 aa31.44■■■□□ 2.62
CASC4-203ENST00000429162 CUX1P39880 1505 aa31.43■■■□□ 2.62
CASC4-203ENST00000429162 KIF21BO75037 1637 aa31.43■■■□□ 2.62
CASC4-203ENST00000429162 TNIKQ9UKE5 1360 aa31.41■■■□□ 2.62
CASC4-203ENST00000429162 CEP164Q9UPV0 1460 aa31.38■■■□□ 2.61
CASC4-203ENST00000429162 TRIM26Q12899 539 aaPredicted RBP31.36■■■□□ 2.61
CASC4-203ENST00000429162 CEP162Q5TB80 1403 aa31.31■■■□□ 2.6
CASC4-203ENST00000429162 UBTFP17480 764 aaKnown RBP31.22■■■□□ 2.59
CASC4-203ENST00000429162 FANCD2Q9BXW9 1451 aa31.15■■■□□ 2.58
CASC4-203ENST00000429162 KIF27Q86VH2 1401 aa31.12■■■□□ 2.57
CASC4-203ENST00000429162 ERICH3Q5RHP9 1530 aa31.1■■■□□ 2.57
CASC4-203ENST00000429162 RAPGEF2Q9Y4G8 1499 aa31.09■■■□□ 2.57
CASC4-203ENST00000429162 LAMC3Q9Y6N6 1575 aa31.09■■■□□ 2.57
CASC4-203ENST00000429162 HRCP23327 699 aa31.08■■■□□ 2.57
CASC4-203ENST00000429162 PRXQ9BXM0 1461 aa31.04■■■□□ 2.56
CASC4-203ENST00000429162 NESP48681 1621 aa31.01■■■□□ 2.55
CASC4-203ENST00000429162 FGD5Q6ZNL6 1462 aa31.01■■■□□ 2.55
CASC4-203ENST00000429162 DNMBPQ6XZF7 1577 aa31■■■□□ 2.55
CASC4-203ENST00000429162 CLIP1P30622 1438 aa30.94■■■□□ 2.54
CASC4-203ENST00000429162 CUX2O14529 1486 aa30.92■■■□□ 2.54
CASC4-203ENST00000429162 TOPBP1Q92547 1522 aa30.87■■■□□ 2.53
CASC4-203ENST00000429162 DNAJC5BQ9UF47 199 aa30.83■■■□□ 2.53
CASC4-203ENST00000429162 PDS5BQ9NTI5 1447 aa30.81■■■□□ 2.52
CASC4-203ENST00000429162 PPARGC1BQ86YN6 1023 aaKnown RBP30.79■■■□□ 2.52
CASC4-203ENST00000429162 POLA1P09884 1462 aaPredicted RBP30.77■■■□□ 2.52
CASC4-203ENST00000429162 VPS8Q8N3P4 1428 aa30.76■■■□□ 2.52
CASC4-203ENST00000429162 ABCA10Q8WWZ4 1543 aa30.74■■■□□ 2.51
CASC4-203ENST00000429162 IGF1RP08069 1367 aa30.73■■■□□ 2.51
CASC4-203ENST00000429162 URB2Q14146 1524 aaKnown RBP30.72■■■□□ 2.51
CASC4-203ENST00000429162 KIF21AQ7Z4S6 1674 aa30.69■■■□□ 2.5
CASC4-203ENST00000429162 RAD54L2Q9Y4B4 1467 aa30.66■■■□□ 2.5
CASC4-203ENST00000429162 WDR97A6NE52 1622 aa30.64■■■□□ 2.49
CASC4-203ENST00000429162 CARMIL1Q5VZK9 1371 aa30.61■■■□□ 2.49
CASC4-203ENST00000429162 ARAP1Q96P48 1450 aa30.57■■■□□ 2.48
CASC4-203ENST00000429162 CUL7Q14999 1698 aa30.54■■■□□ 2.48
CASC4-203ENST00000429162 RANGAP1P46060 587 aaPredicted RBP30.54■■■□□ 2.48
CASC4-203ENST00000429162 ABCA5Q8WWZ7 1642 aa30.47■■■□□ 2.47
CASC4-203ENST00000429162 TTBK1Q5TCY1 1321 aaPredicted RBP30.47■■■□□ 2.47
CASC4-203ENST00000429162 APLP2Q06481 763 aa30.45■■■□□ 2.46
CASC4-203ENST00000429162 ARHGAP35Q9NRY4 1499 aa30.45■■■□□ 2.46
CASC4-203ENST00000429162 ZEB1P37275 1124 aaPredicted RBP30.44■■■□□ 2.46
CASC4-203ENST00000429162 MRC2Q9UBG0 1479 aa30.41■■■□□ 2.46
CASC4-203ENST00000429162 TARBP1Q13395 1621 aaKnown RBP30.37■■■□□ 2.45
CASC4-203ENST00000429162 GAPVD1Q14C86 1478 aa30.34■■■□□ 2.45
CASC4-203ENST00000429162 CTTNBP2Q8WZ74 1663 aa30.3■■■□□ 2.44
CASC4-203ENST00000429162 TDRD9Q8NDG6 1382 aaKnown RBP30.28■■■□□ 2.44
CASC4-203ENST00000429162 WDR62O43379 1518 aa30.23■■■□□ 2.43
CASC4-203ENST00000429162 EFCAB5A4FU69 1503 aa30.21■■■□□ 2.43
CASC4-203ENST00000429162 PBRM1Q86U86 1689 aa30.19■■■□□ 2.42
CASC4-203ENST00000429162 FHAD1B1AJZ9 1412 aa30.13■■■□□ 2.41
CASC4-203ENST00000429162 IFT140Q96RY7 1462 aa30.12■■■□□ 2.41
Retrieved 100 of 20,778 RNA–protein pairs in 81.1 ms