RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 NISCHQ9Y2I1 1504 aa36.29■■■■□ 3.4
SDC1-204ENST00000429035 CCDC180Q9P1Z9 1646 aa32.63■■■□□ 2.81
SDC1-204ENST00000429035 ABCC9O60706 1549 aa32.61■■■□□ 2.81
SDC1-204ENST00000429035 RB1CC1Q8TDY2 1594 aa31.03■■■□□ 2.56
SDC1-204ENST00000429035 NACADO15069 1562 aa30.78■■■□□ 2.52
SDC1-204ENST00000429035 DCAF8L2P0C7V8 631 aa30.68■■■□□ 2.5
SDC1-204ENST00000429035 UNC13AQ9UPW8 1703 aa30.42■■■□□ 2.46
SDC1-204ENST00000429035 DNAJC5BQ9UF47 199 aa30.39■■■□□ 2.46
SDC1-204ENST00000429035 PABPN1Q86U42 306 aaKnown RBP eCLIP30.31■■■□□ 2.44
SDC1-204ENST00000429035 MYO15BQ96JP2 1530 aa30.27■■■□□ 2.44
SDC1-204ENST00000429035 ZCCHC6Q5VYS8 1495 aaKnown RBP30.12■■■□□ 2.41
SDC1-204ENST00000429035 BICRAQ9NZM4 1560 aa30.08■■■□□ 2.41
SDC1-204ENST00000429035 DCAF1Q9Y4B6 1507 aa29.92■■■□□ 2.38
SDC1-204ENST00000429035 SCRIBQ14160 1630 aa29.82■■■□□ 2.36
SDC1-204ENST00000429035 SHROOM4Q9ULL8 1493 aa29.64■■■□□ 2.34
SDC1-204ENST00000429035 CC2D2AQ9P2K1 1620 aa29.45■■■□□ 2.3
SDC1-204ENST00000429035 EIF4G1Q04637 1599 aaKnown RBP29.38■■■□□ 2.29
SDC1-204ENST00000429035 CECR2Q9BXF3 1484 aa29.33■■■□□ 2.29
SDC1-204ENST00000429035 SMARCA4P51532 1647 aa28.38■■■□□ 2.13
SDC1-204ENST00000429035 NCAPD3P42695 1498 aa28.34■■■□□ 2.13
SDC1-204ENST00000429035 ATAD2BQ9ULI0 1458 aa28.32■■■□□ 2.12
SDC1-204ENST00000429035 SMARCA2P51531 1590 aa28.28■■■□□ 2.12
SDC1-204ENST00000429035 HMGXB3Q12766 1538 aa28.23■■■□□ 2.11
SDC1-204ENST00000429035 BAZ1AQ9NRL2 1556 aaPredicted RBP28.2■■■□□ 2.11
SDC1-204ENST00000429035 ERCC6Q03468 1493 aa28.18■■■□□ 2.1
SDC1-204ENST00000429035 BAZ1BQ9UIG0 1483 aaKnown RBP28.11■■■□□ 2.09
SDC1-204ENST00000429035 CUX2O14529 1486 aa28.02■■■□□ 2.08
SDC1-204ENST00000429035 PEG3Q9GZU2 1588 aa28.01■■■□□ 2.07
SDC1-204ENST00000429035 NESP48681 1621 aa28■■■□□ 2.07
SDC1-204ENST00000429035 MROH2BQ7Z745 1585 aa27.99■■■□□ 2.07
SDC1-204ENST00000429035 DNAJC5Q9H3Z4 198 aa27.86■■■□□ 2.05
SDC1-204ENST00000429035 LAMC3Q9Y6N6 1575 aa27.8■■■□□ 2.04
SDC1-204ENST00000429035 THOC2Q8NI27 1593 aaKnown RBP27.74■■■□□ 2.03
SDC1-204ENST00000429035 WIZO95785 1651 aa27.73■■■□□ 2.03
SDC1-204ENST00000429035 KIF21AQ7Z4S6 1674 aa27.73■■■□□ 2.03
SDC1-204ENST00000429035 PDS5BQ9NTI5 1447 aa27.59■■■□□ 2.01
SDC1-204ENST00000429035 CADPSQ9ULU8 1353 aa27.5■■□□□ 1.99
SDC1-204ENST00000429035 MRC2Q9UBG0 1479 aa27.4■■□□□ 1.98
SDC1-204ENST00000429035 RSF1Q96T23 1441 aaPredicted RBP27.37■■□□□ 1.97
SDC1-204ENST00000429035 TOP2AP11388 1531 aaKnown RBP27.35■■□□□ 1.97
SDC1-204ENST00000429035 WDR62O43379 1518 aa27.33■■□□□ 1.97
SDC1-204ENST00000429035 CEP164Q9UPV0 1460 aa27.32■■□□□ 1.96
SDC1-204ENST00000429035 FANCD2Q9BXW9 1451 aa27.27■■□□□ 1.96
SDC1-204ENST00000429035 CFTRP13569 1480 aa27.2■■□□□ 1.95
SDC1-204ENST00000429035 PRDM2Q13029 1718 aa27.13■■□□□ 1.93
SDC1-204ENST00000429035 URB2Q14146 1524 aaKnown RBP27.03■■□□□ 1.92
SDC1-204ENST00000429035 CCDC88BA6NC98 1476 aa26.98■■□□□ 1.91
SDC1-204ENST00000429035 TRIM41Q8WV44 630 aa26.84■■□□□ 1.89
SDC1-204ENST00000429035 TOPBP1Q92547 1522 aa26.75■■□□□ 1.87
SDC1-204ENST00000429035 IFT140Q96RY7 1462 aa26.73■■□□□ 1.87
SDC1-204ENST00000429035 ZNF608Q9ULD9 1512 aaPredicted RBP26.7■■□□□ 1.87
SDC1-204ENST00000429035 DNMBPQ6XZF7 1577 aa26.69■■□□□ 1.86
SDC1-204ENST00000429035 OSCARQ8IYS5 282 aa26.69■■□□□ 1.86
SDC1-204ENST00000429035 ABCC8Q09428 1581 aa26.64■■□□□ 1.86
SDC1-204ENST00000429035 EIF4G3O43432 1585 aaKnown RBP26.63■■□□□ 1.85
SDC1-204ENST00000429035 TARBP1Q13395 1621 aaKnown RBP26.51■■□□□ 1.83
SDC1-204ENST00000429035 RIMBP3CA6NJZ7 1639 aa26.48■■□□□ 1.83
SDC1-204ENST00000429035 RIMBP3BA6NNM3 1639 aa26.48■■□□□ 1.83
SDC1-204ENST00000429035 RIMBP3Q9UFD9 1639 aa26.48■■□□□ 1.83
SDC1-204ENST00000429035 POLA1P09884 1462 aaPredicted RBP26.48■■□□□ 1.83
SDC1-204ENST00000429035 CHD1O14646 1710 aa26.48■■□□□ 1.83
SDC1-204ENST00000429035 AQRO60306 1485 aaKnown RBP eCLIP26.44■■□□□ 1.82
SDC1-204ENST00000429035 RAD54L2Q9Y4B4 1467 aa26.39■■□□□ 1.82
SDC1-204ENST00000429035 ARHGEF11O15085 1522 aa26.36■■□□□ 1.81
SDC1-204ENST00000429035 FGD5Q6ZNL6 1462 aa26.35■■□□□ 1.81
SDC1-204ENST00000429035 SOGA1O94964 1423 aa26.32■■□□□ 1.8
SDC1-204ENST00000429035 CUX1P39880 1505 aa26.31■■□□□ 1.8
SDC1-204ENST00000429035 FBLN2P98095 1184 aa26.31■■□□□ 1.8
SDC1-204ENST00000429035 SUPT5HO00267 1087 aaKnown RBP26.28■■□□□ 1.8
SDC1-204ENST00000429035 TDRD9Q8NDG6 1382 aaKnown RBP26.28■■□□□ 1.8
SDC1-204ENST00000429035 WDR97A6NE52 1622 aa26.25■■□□□ 1.79
SDC1-204ENST00000429035 SNAPC4Q5SXM2 1469 aa26.24■■□□□ 1.79
SDC1-204ENST00000429035 PBRM1Q86U86 1689 aa26.16■■□□□ 1.78
SDC1-204ENST00000429035 CYB5RLQ6IPT4 315 aa26.12■■□□□ 1.77
SDC1-204ENST00000429035 GRIN2BQ13224 1484 aa26.11■■□□□ 1.77
SDC1-204ENST00000429035 MAGI1Q96QZ7 1491 aaPredicted RBP26.11■■□□□ 1.77
SDC1-204ENST00000429035 ARAP1Q96P48 1450 aa26.11■■□□□ 1.77
SDC1-204ENST00000429035 SYNJ1O43426 1573 aa26.09■■□□□ 1.77
SDC1-204ENST00000429035 CHMP7Q8WUX9 453 aaPredicted RBP26.07■■□□□ 1.76
SDC1-204ENST00000429035 CLASP1Q7Z460 1538 aa26.06■■□□□ 1.76
SDC1-204ENST00000429035 GAPVD1Q14C86 1478 aa26.04■■□□□ 1.76
SDC1-204ENST00000429035 SYNJ2O15056 1496 aa26.03■■□□□ 1.76
SDC1-204ENST00000429035 ABCA5Q8WWZ7 1642 aa26.03■■□□□ 1.76
SDC1-204ENST00000429035 ABCA10Q8WWZ4 1543 aa26■■□□□ 1.75
SDC1-204ENST00000429035 BIVM-ERCC5R4GMW8 1640 aa25.94■■□□□ 1.74
SDC1-204ENST00000429035 TOP2BQ02880 1626 aa25.91■■□□□ 1.74
SDC1-204ENST00000429035 WRNQ14191 1432 aaPredicted RBP eCLIP25.89■■□□□ 1.74
SDC1-204ENST00000429035 TRHP20396 242 aaPredicted RBP25.88■■□□□ 1.73
SDC1-204ENST00000429035 ADAMTS12P58397 1594 aa25.86■■□□□ 1.73
SDC1-204ENST00000429035 GRIN2AQ12879 1464 aa25.8■■□□□ 1.72
SDC1-204ENST00000429035 CEP170Q5SW79 1584 aa25.74■■□□□ 1.71
SDC1-204ENST00000429035 ERICH3Q5RHP9 1530 aa25.69■■□□□ 1.7
SDC1-204ENST00000429035 FHAD1B1AJZ9 1412 aa25.69■■□□□ 1.7
SDC1-204ENST00000429035 ERCC6L2Q5T890 1561 aa25.69■■□□□ 1.7
SDC1-204ENST00000429035 NUP160Q12769 1436 aa25.66■■□□□ 1.7
SDC1-204ENST00000429035 SHROOM2Q13796 1616 aa25.59■■□□□ 1.69
SDC1-204ENST00000429035 RUSC2Q8N2Y8 1516 aa25.49■■□□□ 1.67
SDC1-204ENST00000429035 PRG4Q92954 1404 aaPredicted RBP25.45■■□□□ 1.66
SDC1-204ENST00000429035 CUL7Q14999 1698 aa25.4■■□□□ 1.66
SDC1-204ENST00000429035 KIF27Q86VH2 1401 aa25.37■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 75.7 ms