RNA–Protein interactions for RNA: ENST00000428868.1

SMC6-204, Transcript of structural maintenance of chromosomes 6, humanhuman

TSL 4

Gene SMC6, Length 544 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC6-204ENST00000428868 NISCHQ9Y2I1 1504 aa20.77■□□□□ 0.92
SMC6-204ENST00000428868 CCDC180Q9P1Z9 1646 aa18.29■□□□□ 0.52
SMC6-204ENST00000428868 ZCCHC6Q5VYS8 1495 aaKnown RBP17.44■□□□□ 0.38
SMC6-204ENST00000428868 ABCC9O60706 1549 aa17.37■□□□□ 0.37
SMC6-204ENST00000428868 DCAF1Q9Y4B6 1507 aa17.14■□□□□ 0.33
SMC6-204ENST00000428868 DCAF8L2P0C7V8 631 aa17.07■□□□□ 0.32
SMC6-204ENST00000428868 MYO15BQ96JP2 1530 aa16.96■□□□□ 0.31
SMC6-204ENST00000428868 NACADO15069 1562 aa16.96■□□□□ 0.31
SMC6-204ENST00000428868 RB1CC1Q8TDY2 1594 aa16.89■□□□□ 0.29
SMC6-204ENST00000428868 SHROOM4Q9ULL8 1493 aa16.81■□□□□ 0.28
SMC6-204ENST00000428868 UNC13AQ9UPW8 1703 aa16.81■□□□□ 0.28
SMC6-204ENST00000428868 SCRIBQ14160 1630 aa16.8■□□□□ 0.28
SMC6-204ENST00000428868 BICRAQ9NZM4 1560 aa16.47■□□□□ 0.23
SMC6-204ENST00000428868 DNAJC5BQ9UF47 199 aa16.4■□□□□ 0.22
SMC6-204ENST00000428868 PABPN1Q86U42 306 aaKnown RBP eCLIP16.28■□□□□ 0.2
SMC6-204ENST00000428868 CECR2Q9BXF3 1484 aa16.18■□□□□ 0.18
SMC6-204ENST00000428868 MROH2BQ7Z745 1585 aa16.08■□□□□ 0.16
SMC6-204ENST00000428868 SMARCA4P51532 1647 aa16.08■□□□□ 0.16
SMC6-204ENST00000428868 BAZ1AQ9NRL2 1556 aaPredicted RBP16.04■□□□□ 0.16
SMC6-204ENST00000428868 WIZO95785 1651 aa16.02■□□□□ 0.15
SMC6-204ENST00000428868 RSF1Q96T23 1441 aaPredicted RBP16.01■□□□□ 0.15
SMC6-204ENST00000428868 SUPT5HO00267 1087 aaKnown RBP16■□□□□ 0.15
SMC6-204ENST00000428868 EIF4G1Q04637 1599 aaKnown RBP15.93■□□□□ 0.14
SMC6-204ENST00000428868 PEG3Q9GZU2 1588 aa15.83■□□□□ 0.13
SMC6-204ENST00000428868 CC2D2AQ9P2K1 1620 aa15.77■□□□□ 0.12
SMC6-204ENST00000428868 TOP2AP11388 1531 aaKnown RBP15.76■□□□□ 0.11
SMC6-204ENST00000428868 ATAD2BQ9ULI0 1458 aa15.76■□□□□ 0.11
SMC6-204ENST00000428868 SMARCA2P51531 1590 aa15.75■□□□□ 0.11
SMC6-204ENST00000428868 BAZ1BQ9UIG0 1483 aaKnown RBP15.65■□□□□ 0.1
SMC6-204ENST00000428868 HMGXB3Q12766 1538 aa15.65■□□□□ 0.1
SMC6-204ENST00000428868 NCAPD3P42695 1498 aa15.6■□□□□ 0.09
SMC6-204ENST00000428868 CCDC88BA6NC98 1476 aa15.56■□□□□ 0.08
SMC6-204ENST00000428868 PRDM2Q13029 1718 aa15.41■□□□□ 0.06
SMC6-204ENST00000428868 DNAJC5Q9H3Z4 198 aa15.39■□□□□ 0.05
SMC6-204ENST00000428868 ABCC8Q09428 1581 aa15.27■□□□□ 0.03
SMC6-204ENST00000428868 CHIC1Q5VXU3 224 aa15.24■□□□□ 0.03
SMC6-204ENST00000428868 CFTRP13569 1480 aa15.24■□□□□ 0.03
SMC6-204ENST00000428868 NESP48681 1621 aa15.24■□□□□ 0.03
SMC6-204ENST00000428868 LAMC3Q9Y6N6 1575 aa15.18■□□□□ 0.02
SMC6-204ENST00000428868 KIF21AQ7Z4S6 1674 aa15.18■□□□□ 0.02
SMC6-204ENST00000428868 CADPSQ9ULU8 1353 aa15.17■□□□□ 0.02
SMC6-204ENST00000428868 SYNJ1O43426 1573 aa15.14■□□□□ 0.01
SMC6-204ENST00000428868 BIVM-ERCC5R4GMW8 1640 aa15.1■□□□□ 0.01
SMC6-204ENST00000428868 FANCD2Q9BXW9 1451 aa15.07■□□□□ 0
SMC6-204ENST00000428868 WRNQ14191 1432 aaPredicted RBP eCLIP15.05■□□□□ -0
SMC6-204ENST00000428868 CUX1P39880 1505 aa15.05■□□□□ -0
SMC6-204ENST00000428868 TOP2BQ02880 1626 aa15.05■□□□□ -0
SMC6-204ENST00000428868 TRIM41Q8WV44 630 aa15□□□□□ -0.01
SMC6-204ENST00000428868 CEP164Q9UPV0 1460 aa14.99□□□□□ -0.01
SMC6-204ENST00000428868 DNMBPQ6XZF7 1577 aa14.96□□□□□ -0.01
SMC6-204ENST00000428868 PDS5BQ9NTI5 1447 aa14.95□□□□□ -0.02
SMC6-204ENST00000428868 URB2Q14146 1524 aaKnown RBP14.95□□□□□ -0.02
SMC6-204ENST00000428868 TOPBP1Q92547 1522 aa14.92□□□□□ -0.02
SMC6-204ENST00000428868 THOC2Q8NI27 1593 aaKnown RBP14.91□□□□□ -0.02
SMC6-204ENST00000428868 FGD5Q6ZNL6 1462 aa14.88□□□□□ -0.03
SMC6-204ENST00000428868 WDR97A6NE52 1622 aa14.87□□□□□ -0.03
SMC6-204ENST00000428868 RUSC2Q8N2Y8 1516 aa14.87□□□□□ -0.03
SMC6-204ENST00000428868 MRC2Q9UBG0 1479 aa14.86□□□□□ -0.03
SMC6-204ENST00000428868 SOGA1O94964 1423 aa14.85□□□□□ -0.03
SMC6-204ENST00000428868 ERCC6Q03468 1493 aa14.84□□□□□ -0.03
SMC6-204ENST00000428868 WDR62O43379 1518 aa14.83□□□□□ -0.04
SMC6-204ENST00000428868 POLA1P09884 1462 aaPredicted RBP14.82□□□□□ -0.04
SMC6-204ENST00000428868 FAM9AQ8IZU1 332 aaPredicted RBP14.8□□□□□ -0.04
SMC6-204ENST00000428868 CUX2O14529 1486 aa14.79□□□□□ -0.04
SMC6-204ENST00000428868 RAD54L2Q9Y4B4 1467 aa14.79□□□□□ -0.04
SMC6-204ENST00000428868 TARBP1Q13395 1621 aaKnown RBP14.78□□□□□ -0.04
SMC6-204ENST00000428868 ABCA10Q8WWZ4 1543 aa14.71□□□□□ -0.05
SMC6-204ENST00000428868 ABCA5Q8WWZ7 1642 aa14.71□□□□□ -0.05
SMC6-204ENST00000428868 PBRM1Q86U86 1689 aa14.71□□□□□ -0.06
SMC6-204ENST00000428868 EEA1Q15075 1411 aa14.68□□□□□ -0.06
SMC6-204ENST00000428868 LOC105371045A0A1W2PR82 267 aa14.66□□□□□ -0.06
SMC6-204ENST00000428868 KIF21BO75037 1637 aa14.66□□□□□ -0.06
SMC6-204ENST00000428868 KIF27Q86VH2 1401 aa14.65□□□□□ -0.06
SMC6-204ENST00000428868 EHMT2Q96KQ7 1210 aa14.64□□□□□ -0.07
SMC6-204ENST00000428868 EIF4G3O43432 1585 aaKnown RBP14.63□□□□□ -0.07
SMC6-204ENST00000428868 ZNF608Q9ULD9 1512 aaPredicted RBP14.62□□□□□ -0.07
SMC6-204ENST00000428868 IFT140Q96RY7 1462 aa14.62□□□□□ -0.07
SMC6-204ENST00000428868 CSRNP3Q8WYN3 585 aa14.6□□□□□ -0.07
SMC6-204ENST00000428868 TDRD9Q8NDG6 1382 aaKnown RBP14.59□□□□□ -0.07
SMC6-204ENST00000428868 CUL7Q14999 1698 aa14.58□□□□□ -0.08
SMC6-204ENST00000428868 GAPVD1Q14C86 1478 aa14.57□□□□□ -0.08
SMC6-204ENST00000428868 RAPGEF2Q9Y4G8 1499 aa14.57□□□□□ -0.08
SMC6-204ENST00000428868 AQRO60306 1485 aaKnown RBP eCLIP14.56□□□□□ -0.082e-10■■■■□ 22.5
SMC6-204ENST00000428868 PRXQ9BXM0 1461 aa14.56□□□□□ -0.08
SMC6-204ENST00000428868 GOLGA3Q08378 1498 aa14.55□□□□□ -0.08
SMC6-204ENST00000428868 ERICH3Q5RHP9 1530 aa14.55□□□□□ -0.08
SMC6-204ENST00000428868 IGF1RP08069 1367 aa14.54□□□□□ -0.08
SMC6-204ENST00000428868 ADAMTS12P58397 1594 aa14.52□□□□□ -0.08
SMC6-204ENST00000428868 CTTNBP2Q8WZ74 1663 aa14.5□□□□□ -0.09
SMC6-204ENST00000428868 GRIN2BQ13224 1484 aa14.47□□□□□ -0.09
SMC6-204ENST00000428868 CARMIL1Q5VZK9 1371 aa14.47□□□□□ -0.09
SMC6-204ENST00000428868 SNAPC4Q5SXM2 1469 aa14.45□□□□□ -0.1
SMC6-204ENST00000428868 CHD1O14646 1710 aa14.44□□□□□ -0.1
SMC6-204ENST00000428868 TNIKQ9UKE5 1360 aa14.42□□□□□ -0.1
SMC6-204ENST00000428868 UBTFP17480 764 aaKnown RBP14.4□□□□□ -0.1
SMC6-204ENST00000428868 FHAD1B1AJZ9 1412 aa14.38□□□□□ -0.11
SMC6-204ENST00000428868 CEP162Q5TB80 1403 aa14.38□□□□□ -0.11
SMC6-204ENST00000428868 MAGI1Q96QZ7 1491 aaPredicted RBP14.38□□□□□ -0.11
SMC6-204ENST00000428868 CEP170Q5SW79 1584 aa14.33□□□□□ -0.12
SMC6-204ENST00000428868 SYNJ2O15056 1496 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms