RNA–Protein interactions for RNA: ENST00000428728.5

TRIM39-209, Transcript of tripartite motif containing 39, humanhuman

TSL 3

Gene TRIM39, Length 1,013 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-209ENST00000428728 NISCHQ9Y2I1 1504 aa42.68■■■■■ 4.42
TRIM39-209ENST00000428728 CCDC180Q9P1Z9 1646 aa38.35■■■■□ 3.73
TRIM39-209ENST00000428728 ABCC9O60706 1549 aa38.1■■■■□ 3.69
TRIM39-209ENST00000428728 RB1CC1Q8TDY2 1594 aa36.36■■■■□ 3.41
TRIM39-209ENST00000428728 NACADO15069 1562 aa36.11■■■■□ 3.37
TRIM39-209ENST00000428728 DCAF8L2P0C7V8 631 aa35.89■■■■□ 3.34
TRIM39-209ENST00000428728 UNC13AQ9UPW8 1703 aa35.71■■■■□ 3.31
TRIM39-209ENST00000428728 MYO15BQ96JP2 1530 aa35.6■■■■□ 3.29
TRIM39-209ENST00000428728 DNAJC5BQ9UF47 199 aa35.45■■■■□ 3.27
TRIM39-209ENST00000428728 ZCCHC6Q5VYS8 1495 aaKnown RBP35.44■■■■□ 3.26
TRIM39-209ENST00000428728 PABPN1Q86U42 306 aaKnown RBP eCLIP35.41■■■■□ 3.26
TRIM39-209ENST00000428728 BICRAQ9NZM4 1560 aa35.3■■■■□ 3.24
TRIM39-209ENST00000428728 DCAF1Q9Y4B6 1507 aa35.24■■■■□ 3.23
TRIM39-209ENST00000428728 SCRIBQ14160 1630 aa34.97■■■■□ 3.19
TRIM39-209ENST00000428728 SHROOM4Q9ULL8 1493 aa34.77■■■■□ 3.16
TRIM39-209ENST00000428728 CC2D2AQ9P2K1 1620 aa34.46■■■■□ 3.11
TRIM39-209ENST00000428728 EIF4G1Q04637 1599 aaKnown RBP34.4■■■■□ 3.1
TRIM39-209ENST00000428728 CECR2Q9BXF3 1484 aa34.27■■■■□ 3.08
TRIM39-209ENST00000428728 SMARCA4P51532 1647 aa33.34■■■□□ 2.93
TRIM39-209ENST00000428728 NCAPD3P42695 1498 aa33.25■■■□□ 2.91
TRIM39-209ENST00000428728 ATAD2BQ9ULI0 1458 aa33.23■■■□□ 2.91
TRIM39-209ENST00000428728 SMARCA2P51531 1590 aa33.2■■■□□ 2.91
TRIM39-209ENST00000428728 BAZ1AQ9NRL2 1556 aaPredicted RBP33.15■■■□□ 2.9
TRIM39-209ENST00000428728 HMGXB3Q12766 1538 aa33.13■■■□□ 2.89
TRIM39-209ENST00000428728 BAZ1BQ9UIG0 1483 aaKnown RBP32.96■■■□□ 2.87
TRIM39-209ENST00000428728 PEG3Q9GZU2 1588 aa32.96■■■□□ 2.87
TRIM39-209ENST00000428728 MROH2BQ7Z745 1585 aa32.92■■■□□ 2.86
TRIM39-209ENST00000428728 ERCC6Q03468 1493 aa32.88■■■□□ 2.85
TRIM39-209ENST00000428728 NESP48681 1621 aa32.78■■■□□ 2.84
TRIM39-209ENST00000428728 CUX2O14529 1486 aa32.73■■■□□ 2.83
TRIM39-209ENST00000428728 WIZO95785 1651 aa32.62■■■□□ 2.81
TRIM39-209ENST00000428728 LAMC3Q9Y6N6 1575 aa32.59■■■□□ 2.81
TRIM39-209ENST00000428728 KIF21AQ7Z4S6 1674 aa32.5■■■□□ 2.79
TRIM39-209ENST00000428728 THOC2Q8NI27 1593 aaKnown RBP32.49■■■□□ 2.79
TRIM39-209ENST00000428728 DNAJC5Q9H3Z4 198 aa32.39■■■□□ 2.78
TRIM39-209ENST00000428728 PDS5BQ9NTI5 1447 aa32.31■■■□□ 2.76
TRIM39-209ENST00000428728 CADPSQ9ULU8 1353 aa32.25■■■□□ 2.75
TRIM39-209ENST00000428728 RSF1Q96T23 1441 aaPredicted RBP32.24■■■□□ 2.75
TRIM39-209ENST00000428728 TOP2AP11388 1531 aaKnown RBP32.16■■■□□ 2.74
TRIM39-209ENST00000428728 MRC2Q9UBG0 1479 aa32.09■■■□□ 2.73
TRIM39-209ENST00000428728 WDR62O43379 1518 aa32.02■■■□□ 2.72
TRIM39-209ENST00000428728 CEP164Q9UPV0 1460 aa32.01■■■□□ 2.71
TRIM39-209ENST00000428728 FANCD2Q9BXW9 1451 aa31.97■■■□□ 2.71
TRIM39-209ENST00000428728 CFTRP13569 1480 aa31.96■■■□□ 2.71
TRIM39-209ENST00000428728 PRDM2Q13029 1718 aa31.92■■■□□ 2.7
TRIM39-209ENST00000428728 CCDC88BA6NC98 1476 aa31.73■■■□□ 2.67
TRIM39-209ENST00000428728 URB2Q14146 1524 aaKnown RBP31.7■■■□□ 2.67
TRIM39-209ENST00000428728 TOPBP1Q92547 1522 aa31.39■■■□□ 2.62
TRIM39-209ENST00000428728 DNMBPQ6XZF7 1577 aa31.33■■■□□ 2.61
TRIM39-209ENST00000428728 IFT140Q96RY7 1462 aa31.31■■■□□ 2.6
TRIM39-209ENST00000428728 ZNF608Q9ULD9 1512 aaPredicted RBP31.28■■■□□ 2.6
TRIM39-209ENST00000428728 ABCC8Q09428 1581 aa31.27■■■□□ 2.6
TRIM39-209ENST00000428728 EIF4G3O43432 1585 aaKnown RBP31.22■■■□□ 2.59
TRIM39-209ENST00000428728 OSCARQ8IYS5 282 aa31.16■■■□□ 2.58
TRIM39-209ENST00000428728 TRIM41Q8WV44 630 aa31.15■■■□□ 2.58
TRIM39-209ENST00000428728 TARBP1Q13395 1621 aaKnown RBP31.14■■■□□ 2.58
TRIM39-209ENST00000428728 POLA1P09884 1462 aaPredicted RBP31.08■■■□□ 2.57
TRIM39-209ENST00000428728 CHD1O14646 1710 aa31.01■■■□□ 2.56
TRIM39-209ENST00000428728 AQRO60306 1485 aaKnown RBP eCLIP30.98■■■□□ 2.554e-6■■■■■ 31
TRIM39-209ENST00000428728 RAD54L2Q9Y4B4 1467 aa30.95■■■□□ 2.55
TRIM39-209ENST00000428728 SUPT5HO00267 1087 aaKnown RBP30.95■■■□□ 2.55
TRIM39-209ENST00000428728 RIMBP3CA6NJZ7 1639 aa30.94■■■□□ 2.54
TRIM39-209ENST00000428728 RIMBP3BA6NNM3 1639 aa30.94■■■□□ 2.54
TRIM39-209ENST00000428728 RIMBP3Q9UFD9 1639 aa30.94■■■□□ 2.54
TRIM39-209ENST00000428728 CUX1P39880 1505 aa30.93■■■□□ 2.54
TRIM39-209ENST00000428728 FGD5Q6ZNL6 1462 aa30.93■■■□□ 2.54
TRIM39-209ENST00000428728 SOGA1O94964 1423 aa30.88■■■□□ 2.53
TRIM39-209ENST00000428728 WDR97A6NE52 1622 aa30.81■■■□□ 2.52
TRIM39-209ENST00000428728 TDRD9Q8NDG6 1382 aaKnown RBP30.8■■■□□ 2.52
TRIM39-209ENST00000428728 ARHGEF11O15085 1522 aa30.8■■■□□ 2.52
TRIM39-209ENST00000428728 FBLN2P98095 1184 aa30.73■■■□□ 2.51
TRIM39-209ENST00000428728 SNAPC4Q5SXM2 1469 aa30.73■■■□□ 2.51
TRIM39-209ENST00000428728 PBRM1Q86U86 1689 aa30.71■■■□□ 2.51
TRIM39-209ENST00000428728 GRIN2BQ13224 1484 aa30.63■■■□□ 2.49
TRIM39-209ENST00000428728 MAGI1Q96QZ7 1491 aaPredicted RBP30.63■■■□□ 2.49
TRIM39-209ENST00000428728 ABCA5Q8WWZ7 1642 aa30.58■■■□□ 2.49
TRIM39-209ENST00000428728 ABCA10Q8WWZ4 1543 aa30.55■■■□□ 2.48
TRIM39-209ENST00000428728 GAPVD1Q14C86 1478 aa30.55■■■□□ 2.48
TRIM39-209ENST00000428728 BIVM-ERCC5R4GMW8 1640 aa30.55■■■□□ 2.48
TRIM39-209ENST00000428728 SYNJ1O43426 1573 aa30.54■■■□□ 2.48
TRIM39-209ENST00000428728 CLASP1Q7Z460 1538 aa30.53■■■□□ 2.48
TRIM39-209ENST00000428728 SYNJ2O15056 1496 aa30.51■■■□□ 2.48
TRIM39-209ENST00000428728 TOP2BQ02880 1626 aa30.51■■■□□ 2.47
TRIM39-209ENST00000428728 ARAP1Q96P48 1450 aa30.5■■■□□ 2.47
TRIM39-209ENST00000428728 CHMP7Q8WUX9 453 aaPredicted RBP30.49■■■□□ 2.47
TRIM39-209ENST00000428728 CYB5RLQ6IPT4 315 aa30.46■■■□□ 2.47
TRIM39-209ENST00000428728 WRNQ14191 1432 aaPredicted RBP eCLIP30.44■■■□□ 2.46
TRIM39-209ENST00000428728 ADAMTS12P58397 1594 aa30.34■■■□□ 2.45
TRIM39-209ENST00000428728 GRIN2AQ12879 1464 aa30.26■■■□□ 2.44
TRIM39-209ENST00000428728 CEP170Q5SW79 1584 aa30.2■■■□□ 2.42
TRIM39-209ENST00000428728 ERICH3Q5RHP9 1530 aa30.19■■■□□ 2.42
TRIM39-209ENST00000428728 FHAD1B1AJZ9 1412 aa30.14■■■□□ 2.42
TRIM39-209ENST00000428728 NUP160Q12769 1436 aa30.11■■■□□ 2.41
TRIM39-209ENST00000428728 TRHP20396 242 aaPredicted RBP30.1■■■□□ 2.41
TRIM39-209ENST00000428728 ERCC6L2Q5T890 1561 aa30.1■■■□□ 2.41
TRIM39-209ENST00000428728 SHROOM2Q13796 1616 aa30.05■■■□□ 2.4
TRIM39-209ENST00000428728 RUSC2Q8N2Y8 1516 aa29.92■■■□□ 2.38
TRIM39-209ENST00000428728 CUL7Q14999 1698 aa29.87■■■□□ 2.37
TRIM39-209ENST00000428728 KIF27Q86VH2 1401 aa29.83■■■□□ 2.37
TRIM39-209ENST00000428728 PRG4Q92954 1404 aaPredicted RBP29.81■■■□□ 2.36
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms