RNA–Protein interactions for RNA: ENST00000428552.1

CSTF1-203, Transcript of cleavage stimulation factor subunit 1, humanhuman

TSL 3

Gene CSTF1, Length 554 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSTF1-203ENST00000428552 NISCHQ9Y2I1 1504 aa20.92■□□□□ 0.94
CSTF1-203ENST00000428552 ABCC9O60706 1549 aa19.23■□□□□ 0.67
CSTF1-203ENST00000428552 CCDC180Q9P1Z9 1646 aa18.9■□□□□ 0.62
CSTF1-203ENST00000428552 DNAJC5BQ9UF47 199 aa18.41■□□□□ 0.54
CSTF1-203ENST00000428552 RB1CC1Q8TDY2 1594 aa18.13■□□□□ 0.49
CSTF1-203ENST00000428552 NACADO15069 1562 aa17.93■□□□□ 0.46
CSTF1-203ENST00000428552 PABPN1Q86U42 306 aaKnown RBP eCLIP17.83■□□□□ 0.44
CSTF1-203ENST00000428552 UNC13AQ9UPW8 1703 aa17.78■□□□□ 0.44
CSTF1-203ENST00000428552 BICRAQ9NZM4 1560 aa17.71■□□□□ 0.43
CSTF1-203ENST00000428552 DCAF8L2P0C7V8 631 aa17.67■□□□□ 0.42
CSTF1-203ENST00000428552 MYO15BQ96JP2 1530 aa17.61■□□□□ 0.41
CSTF1-203ENST00000428552 CC2D2AQ9P2K1 1620 aa17.36■□□□□ 0.37
CSTF1-203ENST00000428552 SHROOM4Q9ULL8 1493 aa17.36■□□□□ 0.37
CSTF1-203ENST00000428552 CECR2Q9BXF3 1484 aa17.34■□□□□ 0.37
CSTF1-203ENST00000428552 ZCCHC6Q5VYS8 1495 aaKnown RBP17.29■□□□□ 0.36
CSTF1-203ENST00000428552 DCAF1Q9Y4B6 1507 aa17.26■□□□□ 0.35
CSTF1-203ENST00000428552 EIF4G1Q04637 1599 aaKnown RBP17.25■□□□□ 0.35
CSTF1-203ENST00000428552 SCRIBQ14160 1630 aa17.2■□□□□ 0.34
CSTF1-203ENST00000428552 DNAJC5Q9H3Z4 198 aa17.08■□□□□ 0.32
CSTF1-203ENST00000428552 CUX2O14529 1486 aa16.69■□□□□ 0.26
CSTF1-203ENST00000428552 NCAPD3P42695 1498 aa16.59■□□□□ 0.25
CSTF1-203ENST00000428552 ERCC6Q03468 1493 aa16.55■□□□□ 0.24
CSTF1-203ENST00000428552 ATAD2BQ9ULI0 1458 aa16.49■□□□□ 0.23
CSTF1-203ENST00000428552 NESP48681 1621 aa16.46■□□□□ 0.23
CSTF1-203ENST00000428552 HMGXB3Q12766 1538 aa16.43■□□□□ 0.22
CSTF1-203ENST00000428552 SMARCA4P51532 1647 aa16.39■□□□□ 0.21
CSTF1-203ENST00000428552 SMARCA2P51531 1590 aa16.38■□□□□ 0.21
CSTF1-203ENST00000428552 THOC2Q8NI27 1593 aaKnown RBP16.37■□□□□ 0.21
CSTF1-203ENST00000428552 BAZ1BQ9UIG0 1483 aaKnown RBP16.27■□□□□ 0.19
CSTF1-203ENST00000428552 PEG3Q9GZU2 1588 aa16.26■□□□□ 0.19
CSTF1-203ENST00000428552 LAMC3Q9Y6N6 1575 aa16.24■□□□□ 0.19
CSTF1-203ENST00000428552 BAZ1AQ9NRL2 1556 aaPredicted RBP16.23■□□□□ 0.19
CSTF1-203ENST00000428552 KIF21AQ7Z4S6 1674 aa16.21■□□□□ 0.19
CSTF1-203ENST00000428552 MROH2BQ7Z745 1585 aa16.14■□□□□ 0.17
CSTF1-203ENST00000428552 PDS5BQ9NTI5 1447 aa16.12■□□□□ 0.17
CSTF1-203ENST00000428552 TRIM41Q8WV44 630 aa16.12■□□□□ 0.17
CSTF1-203ENST00000428552 WDR62O43379 1518 aa16.04■□□□□ 0.16
CSTF1-203ENST00000428552 MRC2Q9UBG0 1479 aa16.04■□□□□ 0.16
CSTF1-203ENST00000428552 CADPSQ9ULU8 1353 aa16.04■□□□□ 0.16
CSTF1-203ENST00000428552 WIZO95785 1651 aa15.91■□□□□ 0.14
CSTF1-203ENST00000428552 CEP164Q9UPV0 1460 aa15.89■□□□□ 0.13
CSTF1-203ENST00000428552 FANCD2Q9BXW9 1451 aa15.86■□□□□ 0.13
CSTF1-203ENST00000428552 OSCARQ8IYS5 282 aa15.83■□□□□ 0.12
CSTF1-203ENST00000428552 CFTRP13569 1480 aa15.82■□□□□ 0.12
CSTF1-203ENST00000428552 URB2Q14146 1524 aaKnown RBP15.8■□□□□ 0.12
CSTF1-203ENST00000428552 RIMBP3CA6NJZ7 1639 aa15.73■□□□□ 0.11
CSTF1-203ENST00000428552 RIMBP3BA6NNM3 1639 aa15.73■□□□□ 0.11
CSTF1-203ENST00000428552 RIMBP3Q9UFD9 1639 aa15.73■□□□□ 0.11
CSTF1-203ENST00000428552 TOP2AP11388 1531 aaKnown RBP15.68■□□□□ 0.1
CSTF1-203ENST00000428552 RSF1Q96T23 1441 aaPredicted RBP15.67■□□□□ 0.1
CSTF1-203ENST00000428552 ZNF608Q9ULD9 1512 aaPredicted RBP15.66■□□□□ 0.1
CSTF1-203ENST00000428552 ARHGEF11O15085 1522 aa15.64■□□□□ 0.09
CSTF1-203ENST00000428552 PRDM2Q13029 1718 aa15.6■□□□□ 0.09
CSTF1-203ENST00000428552 IFT140Q96RY7 1462 aa15.59■□□□□ 0.09
CSTF1-203ENST00000428552 TOPBP1Q92547 1522 aa15.54■□□□□ 0.08
CSTF1-203ENST00000428552 EIF4G3O43432 1585 aaKnown RBP15.53■□□□□ 0.08
CSTF1-203ENST00000428552 CCDC88BA6NC98 1476 aa15.51■□□□□ 0.07
CSTF1-203ENST00000428552 ARAP1Q96P48 1450 aa15.49■□□□□ 0.07
CSTF1-203ENST00000428552 CYB5RLQ6IPT4 315 aa15.49■□□□□ 0.07
CSTF1-203ENST00000428552 CHD1O14646 1710 aa15.47■□□□□ 0.07
CSTF1-203ENST00000428552 TARBP1Q13395 1621 aaKnown RBP15.46■□□□□ 0.07
CSTF1-203ENST00000428552 AQRO60306 1485 aaKnown RBP eCLIP15.45■□□□□ 0.063e-8■■■■■ 29
CSTF1-203ENST00000428552 DNMBPQ6XZF7 1577 aa15.45■□□□□ 0.06
CSTF1-203ENST00000428552 ABCC8Q09428 1581 aa15.42■□□□□ 0.06
CSTF1-203ENST00000428552 TRHP20396 242 aaPredicted RBP15.37■□□□□ 0.05
CSTF1-203ENST00000428552 POLA1P09884 1462 aaPredicted RBP15.37■□□□□ 0.05
CSTF1-203ENST00000428552 CLASP1Q7Z460 1538 aa15.33■□□□□ 0.04
CSTF1-203ENST00000428552 RAD54L2Q9Y4B4 1467 aa15.32■□□□□ 0.04
CSTF1-203ENST00000428552 FBLN2P98095 1184 aa15.31■□□□□ 0.04
CSTF1-203ENST00000428552 TDRD9Q8NDG6 1382 aaKnown RBP15.28■□□□□ 0.04
CSTF1-203ENST00000428552 SNAPC4Q5SXM2 1469 aa15.27■□□□□ 0.04
CSTF1-203ENST00000428552 SOGA1O94964 1423 aa15.25■□□□□ 0.03
CSTF1-203ENST00000428552 WDR97A6NE52 1622 aa15.22■□□□□ 0.03
CSTF1-203ENST00000428552 FGD5Q6ZNL6 1462 aa15.21■□□□□ 0.03
CSTF1-203ENST00000428552 SYNJ1O43426 1573 aa15.2■□□□□ 0.02
CSTF1-203ENST00000428552 MAGI1Q96QZ7 1491 aaPredicted RBP15.2■□□□□ 0.02
CSTF1-203ENST00000428552 CUX1P39880 1505 aa15.17■□□□□ 0.02
CSTF1-203ENST00000428552 SYNJ2O15056 1496 aa15.16■□□□□ 0.02
CSTF1-203ENST00000428552 GRIN2BQ13224 1484 aa15.16■□□□□ 0.02
CSTF1-203ENST00000428552 CHMP7Q8WUX9 453 aaPredicted RBP15.16■□□□□ 0.02
CSTF1-203ENST00000428552 AEBP2Q6ZN18 517 aaPredicted RBP15.13■□□□□ 0.01
CSTF1-203ENST00000428552 GAPVD1Q14C86 1478 aa15.13■□□□□ 0.01
CSTF1-203ENST00000428552 PBRM1Q86U86 1689 aa15.09■□□□□ 0.01
CSTF1-203ENST00000428552 ERCC6L2Q5T890 1561 aa15.08■□□□□ 0
CSTF1-203ENST00000428552 ABCA5Q8WWZ7 1642 aa15.06■□□□□ 0
CSTF1-203ENST00000428552 ABCA10Q8WWZ4 1543 aa15.02■□□□□ -0
CSTF1-203ENST00000428552 CEP170Q5SW79 1584 aa14.98□□□□□ -0.01
CSTF1-203ENST00000428552 GRIN2AQ12879 1464 aa14.98□□□□□ -0.01
CSTF1-203ENST00000428552 NUP160Q12769 1436 aa14.98□□□□□ -0.01
CSTF1-203ENST00000428552 SHROOM2Q13796 1616 aa14.95□□□□□ -0.02
CSTF1-203ENST00000428552 ADAMTS12P58397 1594 aa14.95□□□□□ -0.02
CSTF1-203ENST00000428552 KIF13AQ9H1H9 1805 aa14.93□□□□□ -0.02
CSTF1-203ENST00000428552 FHAD1B1AJZ9 1412 aa14.86□□□□□ -0.03
CSTF1-203ENST00000428552 WRNQ14191 1432 aaPredicted RBP eCLIP14.85□□□□□ -0.03
CSTF1-203ENST00000428552 BIVM-ERCC5R4GMW8 1640 aa14.83□□□□□ -0.04
CSTF1-203ENST00000428552 TOP2BQ02880 1626 aa14.82□□□□□ -0.04
CSTF1-203ENST00000428552 PRG4Q92954 1404 aaPredicted RBP14.82□□□□□ -0.04
CSTF1-203ENST00000428552 ERICH3Q5RHP9 1530 aa14.82□□□□□ -0.04
CSTF1-203ENST00000428552 ABCC10Q5T3U5 1492 aa14.79□□□□□ -0.04
CSTF1-203ENST00000428552 DIP2BQ9P265 1576 aa14.77□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms