RNA–Protein interactions for RNA: ENST00000428240.1

ITSN1-216, Transcript of intersectin 1, humanhuman

TSL 1 (best)

Gene ITSN1, Length 213 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITSN1-216ENST00000428240 NISCHQ9Y2I1 1504 aa20.99■□□□□ 0.95
ITSN1-216ENST00000428240 ABCC9O60706 1549 aa19.31■□□□□ 0.68
ITSN1-216ENST00000428240 CCDC180Q9P1Z9 1646 aa18.91■□□□□ 0.62
ITSN1-216ENST00000428240 DNAJC5BQ9UF47 199 aa18.46■□□□□ 0.55
ITSN1-216ENST00000428240 RB1CC1Q8TDY2 1594 aa18.18■□□□□ 0.5
ITSN1-216ENST00000428240 NACADO15069 1562 aa17.98■□□□□ 0.47
ITSN1-216ENST00000428240 PABPN1Q86U42 306 aaKnown RBP eCLIP17.96■□□□□ 0.47
ITSN1-216ENST00000428240 DCAF8L2P0C7V8 631 aa17.89■□□□□ 0.45
ITSN1-216ENST00000428240 UNC13AQ9UPW8 1703 aa17.76■□□□□ 0.43
ITSN1-216ENST00000428240 BICRAQ9NZM4 1560 aa17.71■□□□□ 0.43
ITSN1-216ENST00000428240 MYO15BQ96JP2 1530 aa17.62■□□□□ 0.41
ITSN1-216ENST00000428240 CECR2Q9BXF3 1484 aa17.42■□□□□ 0.38
ITSN1-216ENST00000428240 CC2D2AQ9P2K1 1620 aa17.4■□□□□ 0.38
ITSN1-216ENST00000428240 SHROOM4Q9ULL8 1493 aa17.37■□□□□ 0.37
ITSN1-216ENST00000428240 ZCCHC6Q5VYS8 1495 aaKnown RBP17.32■□□□□ 0.36
ITSN1-216ENST00000428240 EIF4G1Q04637 1599 aaKnown RBP17.28■□□□□ 0.36
ITSN1-216ENST00000428240 DCAF1Q9Y4B6 1507 aa17.28■□□□□ 0.36
ITSN1-216ENST00000428240 SCRIBQ14160 1630 aa17.27■□□□□ 0.36
ITSN1-216ENST00000428240 DNAJC5Q9H3Z4 198 aa17.13■□□□□ 0.33
ITSN1-216ENST00000428240 CUX2O14529 1486 aa16.73■□□□□ 0.27
ITSN1-216ENST00000428240 ERCC6Q03468 1493 aa16.67■□□□□ 0.26
ITSN1-216ENST00000428240 NCAPD3P42695 1498 aa16.63■□□□□ 0.25
ITSN1-216ENST00000428240 ATAD2BQ9ULI0 1458 aa16.54■□□□□ 0.24
ITSN1-216ENST00000428240 NESP48681 1621 aa16.52■□□□□ 0.23
ITSN1-216ENST00000428240 HMGXB3Q12766 1538 aa16.45■□□□□ 0.22
ITSN1-216ENST00000428240 SMARCA2P51531 1590 aa16.44■□□□□ 0.22
ITSN1-216ENST00000428240 SMARCA4P51532 1647 aa16.42■□□□□ 0.22
ITSN1-216ENST00000428240 THOC2Q8NI27 1593 aaKnown RBP16.37■□□□□ 0.21
ITSN1-216ENST00000428240 BAZ1BQ9UIG0 1483 aaKnown RBP16.35■□□□□ 0.21
ITSN1-216ENST00000428240 BAZ1AQ9NRL2 1556 aaPredicted RBP16.29■□□□□ 0.2
ITSN1-216ENST00000428240 LAMC3Q9Y6N6 1575 aa16.28■□□□□ 0.2
ITSN1-216ENST00000428240 TRIM41Q8WV44 630 aa16.27■□□□□ 0.2
ITSN1-216ENST00000428240 PEG3Q9GZU2 1588 aa16.26■□□□□ 0.19
ITSN1-216ENST00000428240 KIF21AQ7Z4S6 1674 aa16.24■□□□□ 0.19
ITSN1-216ENST00000428240 PDS5BQ9NTI5 1447 aa16.21■□□□□ 0.19
ITSN1-216ENST00000428240 MROH2BQ7Z745 1585 aa16.19■□□□□ 0.18
ITSN1-216ENST00000428240 CADPSQ9ULU8 1353 aa16.12■□□□□ 0.17
ITSN1-216ENST00000428240 MRC2Q9UBG0 1479 aa16.1■□□□□ 0.17
ITSN1-216ENST00000428240 WDR62O43379 1518 aa16.07■□□□□ 0.16
ITSN1-216ENST00000428240 CEP164Q9UPV0 1460 aa15.97■□□□□ 0.15
ITSN1-216ENST00000428240 WIZO95785 1651 aa15.96■□□□□ 0.15
ITSN1-216ENST00000428240 OSCARQ8IYS5 282 aa15.94■□□□□ 0.14
ITSN1-216ENST00000428240 FANCD2Q9BXW9 1451 aa15.94■□□□□ 0.14
ITSN1-216ENST00000428240 CFTRP13569 1480 aa15.87■□□□□ 0.13
ITSN1-216ENST00000428240 URB2Q14146 1524 aaKnown RBP15.84■□□□□ 0.13
ITSN1-216ENST00000428240 RIMBP3CA6NJZ7 1639 aa15.76■□□□□ 0.11
ITSN1-216ENST00000428240 RIMBP3BA6NNM3 1639 aa15.76■□□□□ 0.11
ITSN1-216ENST00000428240 RIMBP3Q9UFD9 1639 aa15.76■□□□□ 0.11
ITSN1-216ENST00000428240 RSF1Q96T23 1441 aaPredicted RBP15.74■□□□□ 0.11
ITSN1-216ENST00000428240 TOP2AP11388 1531 aaKnown RBP15.72■□□□□ 0.11
ITSN1-216ENST00000428240 ZNF608Q9ULD9 1512 aaPredicted RBP15.71■□□□□ 0.11
ITSN1-216ENST00000428240 ARHGEF11O15085 1522 aa15.68■□□□□ 0.1
ITSN1-216ENST00000428240 IFT140Q96RY7 1462 aa15.65■□□□□ 0.1
ITSN1-216ENST00000428240 CYB5RLQ6IPT4 315 aa15.62■□□□□ 0.09
ITSN1-216ENST00000428240 TOPBP1Q92547 1522 aa15.59■□□□□ 0.09
ITSN1-216ENST00000428240 PRDM2Q13029 1718 aa15.59■□□□□ 0.09
ITSN1-216ENST00000428240 CCDC88BA6NC98 1476 aa15.58■□□□□ 0.08
ITSN1-216ENST00000428240 EIF4G3O43432 1585 aaKnown RBP15.57■□□□□ 0.08
ITSN1-216ENST00000428240 TRHP20396 242 aaPredicted RBP15.54■□□□□ 0.08
ITSN1-216ENST00000428240 AQRO60306 1485 aaKnown RBP eCLIP15.52■□□□□ 0.08
ITSN1-216ENST00000428240 ARAP1Q96P48 1450 aa15.52■□□□□ 0.08
ITSN1-216ENST00000428240 ABCC8Q09428 1581 aa15.49■□□□□ 0.07
ITSN1-216ENST00000428240 DNMBPQ6XZF7 1577 aa15.49■□□□□ 0.07
ITSN1-216ENST00000428240 CHD1O14646 1710 aa15.48■□□□□ 0.07
ITSN1-216ENST00000428240 FBLN2P98095 1184 aa15.48■□□□□ 0.07
ITSN1-216ENST00000428240 TARBP1Q13395 1621 aaKnown RBP15.47■□□□□ 0.07
ITSN1-216ENST00000428240 POLA1P09884 1462 aaPredicted RBP15.43■□□□□ 0.06
ITSN1-216ENST00000428240 RAD54L2Q9Y4B4 1467 aa15.4■□□□□ 0.06
ITSN1-216ENST00000428240 TDRD9Q8NDG6 1382 aaKnown RBP15.38■□□□□ 0.05
ITSN1-216ENST00000428240 SOGA1O94964 1423 aa15.34■□□□□ 0.05
ITSN1-216ENST00000428240 SNAPC4Q5SXM2 1469 aa15.33■□□□□ 0.05
ITSN1-216ENST00000428240 CLASP1Q7Z460 1538 aa15.33■□□□□ 0.05
ITSN1-216ENST00000428240 AEBP2Q6ZN18 517 aaPredicted RBP15.3■□□□□ 0.04
ITSN1-216ENST00000428240 CHMP7Q8WUX9 453 aaPredicted RBP15.3■□□□□ 0.04
ITSN1-216ENST00000428240 FGD5Q6ZNL6 1462 aa15.27■□□□□ 0.04
ITSN1-216ENST00000428240 SYNJ1O43426 1573 aa15.27■□□□□ 0.03
ITSN1-216ENST00000428240 MAGI1Q96QZ7 1491 aaPredicted RBP15.25■□□□□ 0.03
ITSN1-216ENST00000428240 WDR97A6NE52 1622 aa15.25■□□□□ 0.03
ITSN1-216ENST00000428240 GRIN2BQ13224 1484 aa15.24■□□□□ 0.03
ITSN1-216ENST00000428240 SYNJ2O15056 1496 aa15.22■□□□□ 0.03
ITSN1-216ENST00000428240 CUX1P39880 1505 aa15.22■□□□□ 0.03
ITSN1-216ENST00000428240 GAPVD1Q14C86 1478 aa15.2■□□□□ 0.02
ITSN1-216ENST00000428240 PBRM1Q86U86 1689 aa15.12■□□□□ 0.01
ITSN1-216ENST00000428240 ERCC6L2Q5T890 1561 aa15.11■□□□□ 0.01
ITSN1-216ENST00000428240 ABCA5Q8WWZ7 1642 aa15.07■□□□□ 0
ITSN1-216ENST00000428240 ABCA10Q8WWZ4 1543 aa15.07■□□□□ 0
ITSN1-216ENST00000428240 GRIN2AQ12879 1464 aa15.05■□□□□ -0
ITSN1-216ENST00000428240 CEP170Q5SW79 1584 aa15.02□□□□□ -0.01
ITSN1-216ENST00000428240 NUP160Q12769 1436 aa15.01□□□□□ -0.01
ITSN1-216ENST00000428240 ADAMTS12P58397 1594 aa14.98□□□□□ -0.01
ITSN1-216ENST00000428240 SHROOM2Q13796 1616 aa14.95□□□□□ -0.02
ITSN1-216ENST00000428240 WRNQ14191 1432 aaPredicted RBP eCLIP14.95□□□□□ -0.02
ITSN1-216ENST00000428240 FHAD1B1AJZ9 1412 aa14.93□□□□□ -0.02
ITSN1-216ENST00000428240 KIF13AQ9H1H9 1805 aa14.92□□□□□ -0.02
ITSN1-216ENST00000428240 PRG4Q92954 1404 aaPredicted RBP14.91□□□□□ -0.02
ITSN1-216ENST00000428240 FAM69CQ0P6D2 419 aa14.87□□□□□ -0.03
ITSN1-216ENST00000428240 ERICH3Q5RHP9 1530 aa14.87□□□□□ -0.03
ITSN1-216ENST00000428240 JPH4Q96JJ6 628 aa14.86□□□□□ -0.03
ITSN1-216ENST00000428240 TOP2BQ02880 1626 aa14.85□□□□□ -0.03
ITSN1-216ENST00000428240 BIVM-ERCC5R4GMW8 1640 aa14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 75.9 ms