RNA–Protein interactions for RNA: ENST00000428021.1

VRK2-204, Transcript of vaccinia related kinase 2, humanhuman

TSL 4

Gene VRK2, Length 553 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK2-204ENST00000428021 NISCHQ9Y2I1 1504 aa40.83■■■■■ 4.13
VRK2-204ENST00000428021 CCDC180Q9P1Z9 1646 aa36.3■■■■□ 3.4
VRK2-204ENST00000428021 ABCC9O60706 1549 aa35.63■■■■□ 3.29
VRK2-204ENST00000428021 RB1CC1Q8TDY2 1594 aa34.21■■■■□ 3.07
VRK2-204ENST00000428021 NACADO15069 1562 aa34.16■■■■□ 3.06
VRK2-204ENST00000428021 DCAF8L2P0C7V8 631 aa34.12■■■■□ 3.05
VRK2-204ENST00000428021 ZCCHC6Q5VYS8 1495 aaKnown RBP33.98■■■■□ 3.03
VRK2-204ENST00000428021 MYO15BQ96JP2 1530 aa33.94■■■■□ 3.02
VRK2-204ENST00000428021 DCAF1Q9Y4B6 1507 aa33.76■■■■□ 3
VRK2-204ENST00000428021 UNC13AQ9UPW8 1703 aa33.48■■■□□ 2.95
VRK2-204ENST00000428021 PABPN1Q86U42 306 aaKnown RBP eCLIP33.31■■■□□ 2.92
VRK2-204ENST00000428021 BICRAQ9NZM4 1560 aa33.25■■■□□ 2.91
VRK2-204ENST00000428021 SCRIBQ14160 1630 aa33.13■■■□□ 2.89
VRK2-204ENST00000428021 DNAJC5BQ9UF47 199 aa32.88■■■□□ 2.85
VRK2-204ENST00000428021 SHROOM4Q9ULL8 1493 aa32.81■■■□□ 2.84
VRK2-204ENST00000428021 EIF4G1Q04637 1599 aaKnown RBP32.33■■■□□ 2.77
VRK2-204ENST00000428021 CC2D2AQ9P2K1 1620 aa32.23■■■□□ 2.75
VRK2-204ENST00000428021 CECR2Q9BXF3 1484 aa32.02■■■□□ 2.72
VRK2-204ENST00000428021 SMARCA4P51532 1647 aa31.69■■■□□ 2.66
VRK2-204ENST00000428021 BAZ1AQ9NRL2 1556 aaPredicted RBP31.61■■■□□ 2.65
VRK2-204ENST00000428021 ATAD2BQ9ULI0 1458 aa31.56■■■□□ 2.64
VRK2-204ENST00000428021 NCAPD3P42695 1498 aa31.55■■■□□ 2.64
VRK2-204ENST00000428021 MROH2BQ7Z745 1585 aa31.48■■■□□ 2.63
VRK2-204ENST00000428021 SMARCA2P51531 1590 aa31.47■■■□□ 2.63
VRK2-204ENST00000428021 PEG3Q9GZU2 1588 aa31.39■■■□□ 2.61
VRK2-204ENST00000428021 HMGXB3Q12766 1538 aa31.36■■■□□ 2.61
VRK2-204ENST00000428021 BAZ1BQ9UIG0 1483 aaKnown RBP31.25■■■□□ 2.59
VRK2-204ENST00000428021 WIZO95785 1651 aa31.13■■■□□ 2.57
VRK2-204ENST00000428021 RSF1Q96T23 1441 aaPredicted RBP31.08■■■□□ 2.57
VRK2-204ENST00000428021 NESP48681 1621 aa30.84■■■□□ 2.53
VRK2-204ENST00000428021 TOP2AP11388 1531 aaKnown RBP30.77■■■□□ 2.52
VRK2-204ENST00000428021 LAMC3Q9Y6N6 1575 aa30.7■■■□□ 2.5
VRK2-204ENST00000428021 ERCC6Q03468 1493 aa30.67■■■□□ 2.5
VRK2-204ENST00000428021 CADPSQ9ULU8 1353 aa30.62■■■□□ 2.49
VRK2-204ENST00000428021 PDS5BQ9NTI5 1447 aa30.49■■■□□ 2.47
VRK2-204ENST00000428021 KIF21AQ7Z4S6 1674 aa30.44■■■□□ 2.46
VRK2-204ENST00000428021 CCDC88BA6NC98 1476 aa30.44■■■□□ 2.46
VRK2-204ENST00000428021 CFTRP13569 1480 aa30.42■■■□□ 2.46
VRK2-204ENST00000428021 CUX2O14529 1486 aa30.41■■■□□ 2.46
VRK2-204ENST00000428021 THOC2Q8NI27 1593 aaKnown RBP30.37■■■□□ 2.45
VRK2-204ENST00000428021 FANCD2Q9BXW9 1451 aa30.25■■■□□ 2.43
VRK2-204ENST00000428021 CEP164Q9UPV0 1460 aa30.21■■■□□ 2.43
VRK2-204ENST00000428021 MRC2Q9UBG0 1479 aa30.19■■■□□ 2.42
VRK2-204ENST00000428021 SUPT5HO00267 1087 aaKnown RBP30.19■■■□□ 2.42
VRK2-204ENST00000428021 PRDM2Q13029 1718 aa30.15■■■□□ 2.42
VRK2-204ENST00000428021 WDR62O43379 1518 aa30.11■■■□□ 2.41
VRK2-204ENST00000428021 URB2Q14146 1524 aaKnown RBP29.99■■■□□ 2.39
VRK2-204ENST00000428021 TOPBP1Q92547 1522 aa29.77■■■□□ 2.36
VRK2-204ENST00000428021 ABCC8Q09428 1581 aa29.73■■■□□ 2.35
VRK2-204ENST00000428021 DNMBPQ6XZF7 1577 aa29.71■■■□□ 2.35
VRK2-204ENST00000428021 DNAJC5Q9H3Z4 198 aa29.63■■■□□ 2.33
VRK2-204ENST00000428021 IFT140Q96RY7 1462 aa29.59■■■□□ 2.33
VRK2-204ENST00000428021 CUX1P39880 1505 aa29.53■■■□□ 2.32
VRK2-204ENST00000428021 POLA1P09884 1462 aaPredicted RBP29.52■■■□□ 2.32
VRK2-204ENST00000428021 ZNF608Q9ULD9 1512 aaPredicted RBP29.5■■■□□ 2.31
VRK2-204ENST00000428021 TARBP1Q13395 1621 aaKnown RBP29.47■■■□□ 2.31
VRK2-204ENST00000428021 FGD5Q6ZNL6 1462 aa29.42■■■□□ 2.3
VRK2-204ENST00000428021 RAD54L2Q9Y4B4 1467 aa29.41■■■□□ 2.3
VRK2-204ENST00000428021 SOGA1O94964 1423 aa29.39■■■□□ 2.3
VRK2-204ENST00000428021 EIF4G3O43432 1585 aaKnown RBP29.35■■■□□ 2.29
VRK2-204ENST00000428021 AQRO60306 1485 aaKnown RBP eCLIP29.32■■■□□ 2.287e-6■□□□□ 9.9
VRK2-204ENST00000428021 WRNQ14191 1432 aaPredicted RBP eCLIP29.27■■■□□ 2.28
VRK2-204ENST00000428021 TDRD9Q8NDG6 1382 aaKnown RBP29.25■■■□□ 2.27
VRK2-204ENST00000428021 SYNJ1O43426 1573 aa29.23■■■□□ 2.27
VRK2-204ENST00000428021 TOP2BQ02880 1626 aa29.23■■■□□ 2.27
VRK2-204ENST00000428021 BIVM-ERCC5R4GMW8 1640 aa29.23■■■□□ 2.27
VRK2-204ENST00000428021 WDR97A6NE52 1622 aa29.19■■■□□ 2.26
VRK2-204ENST00000428021 OSCARQ8IYS5 282 aa29.15■■■□□ 2.26
VRK2-204ENST00000428021 ABCA10Q8WWZ4 1543 aa29.14■■■□□ 2.25
VRK2-204ENST00000428021 GRIN2BQ13224 1484 aa29.04■■■□□ 2.24
VRK2-204ENST00000428021 GAPVD1Q14C86 1478 aa29.04■■■□□ 2.24
VRK2-204ENST00000428021 ABCA5Q8WWZ7 1642 aa29.03■■■□□ 2.24
VRK2-204ENST00000428021 SNAPC4Q5SXM2 1469 aa29.02■■■□□ 2.24
VRK2-204ENST00000428021 CHD1O14646 1710 aa29■■■□□ 2.23
VRK2-204ENST00000428021 PBRM1Q86U86 1689 aa28.97■■■□□ 2.23
VRK2-204ENST00000428021 MAGI1Q96QZ7 1491 aaPredicted RBP28.97■■■□□ 2.23
VRK2-204ENST00000428021 FBLN2P98095 1184 aa28.94■■■□□ 2.22
VRK2-204ENST00000428021 SYNJ2O15056 1496 aa28.86■■■□□ 2.21
VRK2-204ENST00000428021 CHMP7Q8WUX9 453 aaPredicted RBP28.85■■■□□ 2.21
VRK2-204ENST00000428021 ERICH3Q5RHP9 1530 aa28.78■■■□□ 2.2
VRK2-204ENST00000428021 ADAMTS12P58397 1594 aa28.75■■■□□ 2.19
VRK2-204ENST00000428021 CLASP1Q7Z460 1538 aa28.7■■■□□ 2.19
VRK2-204ENST00000428021 RIMBP3CA6NJZ7 1639 aa28.7■■■□□ 2.19
VRK2-204ENST00000428021 RIMBP3BA6NNM3 1639 aa28.7■■■□□ 2.19
VRK2-204ENST00000428021 RIMBP3Q9UFD9 1639 aa28.7■■■□□ 2.19
VRK2-204ENST00000428021 FHAD1B1AJZ9 1412 aa28.69■■■□□ 2.18
VRK2-204ENST00000428021 ARHGEF11O15085 1522 aa28.68■■■□□ 2.18
VRK2-204ENST00000428021 GRIN2AQ12879 1464 aa28.67■■■□□ 2.18
VRK2-204ENST00000428021 KIF27Q86VH2 1401 aa28.66■■■□□ 2.18
VRK2-204ENST00000428021 IGF1RP08069 1367 aa28.61■■■□□ 2.17
VRK2-204ENST00000428021 TRIM41Q8WV44 630 aa28.58■■■□□ 2.17
VRK2-204ENST00000428021 NUP160Q12769 1436 aa28.57■■■□□ 2.16
VRK2-204ENST00000428021 CEP170Q5SW79 1584 aa28.55■■■□□ 2.16
VRK2-204ENST00000428021 CUL7Q14999 1698 aa28.48■■■□□ 2.15
VRK2-204ENST00000428021 ARAP1Q96P48 1450 aa28.46■■■□□ 2.15
VRK2-204ENST00000428021 RUSC2Q8N2Y8 1516 aa28.44■■■□□ 2.14
VRK2-204ENST00000428021 CYB5RLQ6IPT4 315 aa28.43■■■□□ 2.14
VRK2-204ENST00000428021 CARMIL1Q5VZK9 1371 aa28.41■■■□□ 2.14
VRK2-204ENST00000428021 SHROOM2Q13796 1616 aa28.36■■■□□ 2.13
VRK2-204ENST00000428021 ERCC6L2Q5T890 1561 aa28.33■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 179.4 ms