RNA–Protein interactions for RNA: ENST00000427943.1

PSPC1-202, Transcript of paraspeckle component 1, humanhuman

TSL 5

Gene PSPC1, Length 866 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSPC1-202ENST00000427943 NISCHQ9Y2I1 1504 aa45.67■■■■■ 4.9
PSPC1-202ENST00000427943 CCDC180Q9P1Z9 1646 aa40.91■■■■■ 4.14
PSPC1-202ENST00000427943 ABCC9O60706 1549 aa40.47■■■■■ 4.07
PSPC1-202ENST00000427943 RB1CC1Q8TDY2 1594 aa38.7■■■■□ 3.79
PSPC1-202ENST00000427943 NACADO15069 1562 aa38.48■■■■□ 3.75
PSPC1-202ENST00000427943 DCAF8L2P0C7V8 631 aa38.32■■■■□ 3.72
PSPC1-202ENST00000427943 MYO15BQ96JP2 1530 aa38.04■■■■□ 3.68
PSPC1-202ENST00000427943 UNC13AQ9UPW8 1703 aa37.99■■■■□ 3.67
PSPC1-202ENST00000427943 ZCCHC6Q5VYS8 1495 aaKnown RBP37.96■■■■□ 3.67
PSPC1-202ENST00000427943 DCAF1Q9Y4B6 1507 aa37.72■■■■□ 3.63
PSPC1-202ENST00000427943 PABPN1Q86U42 306 aaKnown RBP eCLIP37.67■■■■□ 3.62
PSPC1-202ENST00000427943 BICRAQ9NZM4 1560 aa37.58■■■■□ 3.61
PSPC1-202ENST00000427943 DNAJC5BQ9UF47 199 aa37.51■■■■□ 3.6
PSPC1-202ENST00000427943 SCRIBQ14160 1630 aa37.32■■■■□ 3.57
PSPC1-202ENST00000427943 SHROOM4Q9ULL8 1493 aa37.02■■■■□ 3.52
PSPC1-202ENST00000427943 EIF4G1Q04637 1599 aaKnown RBP36.61■■■■□ 3.45
PSPC1-202ENST00000427943 CC2D2AQ9P2K1 1620 aa36.6■■■■□ 3.45
PSPC1-202ENST00000427943 CECR2Q9BXF3 1484 aa36.37■■■■□ 3.41
PSPC1-202ENST00000427943 SMARCA4P51532 1647 aa35.61■■■■□ 3.29
PSPC1-202ENST00000427943 NCAPD3P42695 1498 aa35.47■■■■□ 3.27
PSPC1-202ENST00000427943 ATAD2BQ9ULI0 1458 aa35.46■■■■□ 3.27
PSPC1-202ENST00000427943 BAZ1AQ9NRL2 1556 aaPredicted RBP35.45■■■■□ 3.27
PSPC1-202ENST00000427943 SMARCA2P51531 1590 aa35.41■■■■□ 3.26
PSPC1-202ENST00000427943 HMGXB3Q12766 1538 aa35.32■■■■□ 3.25
PSPC1-202ENST00000427943 MROH2BQ7Z745 1585 aa35.23■■■■□ 3.23
PSPC1-202ENST00000427943 PEG3Q9GZU2 1588 aa35.21■■■■□ 3.23
PSPC1-202ENST00000427943 BAZ1BQ9UIG0 1483 aaKnown RBP35.17■■■■□ 3.22
PSPC1-202ENST00000427943 ERCC6Q03468 1493 aa34.9■■■■□ 3.18
PSPC1-202ENST00000427943 WIZO95785 1651 aa34.89■■■■□ 3.18
PSPC1-202ENST00000427943 NESP48681 1621 aa34.88■■■■□ 3.17
PSPC1-202ENST00000427943 LAMC3Q9Y6N6 1575 aa34.7■■■■□ 3.14
PSPC1-202ENST00000427943 CUX2O14529 1486 aa34.66■■■■□ 3.14
PSPC1-202ENST00000427943 RSF1Q96T23 1441 aaPredicted RBP34.57■■■■□ 3.13
PSPC1-202ENST00000427943 KIF21AQ7Z4S6 1674 aa34.57■■■■□ 3.12
PSPC1-202ENST00000427943 THOC2Q8NI27 1593 aaKnown RBP34.51■■■■□ 3.12
PSPC1-202ENST00000427943 TOP2AP11388 1531 aaKnown RBP34.43■■■■□ 3.1
PSPC1-202ENST00000427943 CADPSQ9ULU8 1353 aa34.4■■■■□ 3.1
PSPC1-202ENST00000427943 PDS5BQ9NTI5 1447 aa34.39■■■■□ 3.1
PSPC1-202ENST00000427943 MRC2Q9UBG0 1479 aa34.14■■■■□ 3.06
PSPC1-202ENST00000427943 CFTRP13569 1480 aa34.13■■■■□ 3.05
PSPC1-202ENST00000427943 DNAJC5Q9H3Z4 198 aa34.11■■■■□ 3.05
PSPC1-202ENST00000427943 CEP164Q9UPV0 1460 aa34.1■■■■□ 3.05
PSPC1-202ENST00000427943 FANCD2Q9BXW9 1451 aa34.07■■■■□ 3.05
PSPC1-202ENST00000427943 WDR62O43379 1518 aa34.07■■■■□ 3.04
PSPC1-202ENST00000427943 PRDM2Q13029 1718 aa34.04■■■■□ 3.04
PSPC1-202ENST00000427943 CCDC88BA6NC98 1476 aa33.98■■■■□ 3.03
PSPC1-202ENST00000427943 URB2Q14146 1524 aaKnown RBP33.8■■■■□ 3
PSPC1-202ENST00000427943 TOPBP1Q92547 1522 aa33.49■■■□□ 2.95
PSPC1-202ENST00000427943 DNMBPQ6XZF7 1577 aa33.43■■■□□ 2.94
PSPC1-202ENST00000427943 ABCC8Q09428 1581 aa33.38■■■□□ 2.93
PSPC1-202ENST00000427943 IFT140Q96RY7 1462 aa33.37■■■□□ 2.93
PSPC1-202ENST00000427943 SUPT5HO00267 1087 aaKnown RBP33.34■■■□□ 2.93
PSPC1-202ENST00000427943 ZNF608Q9ULD9 1512 aaPredicted RBP33.32■■■□□ 2.92
PSPC1-202ENST00000427943 EIF4G3O43432 1585 aaKnown RBP33.23■■■□□ 2.91
PSPC1-202ENST00000427943 TARBP1Q13395 1621 aaKnown RBP33.21■■■□□ 2.91
PSPC1-202ENST00000427943 POLA1P09884 1462 aaPredicted RBP33.18■■■□□ 2.9
PSPC1-202ENST00000427943 CUX1P39880 1505 aa33.07■■■□□ 2.89
PSPC1-202ENST00000427943 OSCARQ8IYS5 282 aa33.06■■■□□ 2.88
PSPC1-202ENST00000427943 RAD54L2Q9Y4B4 1467 aa33.05■■■□□ 2.88
PSPC1-202ENST00000427943 FGD5Q6ZNL6 1462 aa33.04■■■□□ 2.88
PSPC1-202ENST00000427943 AQRO60306 1485 aaKnown RBP eCLIP33.03■■■□□ 2.882e-11■■□□□ 13.8
PSPC1-202ENST00000427943 SOGA1O94964 1423 aa32.98■■■□□ 2.87
PSPC1-202ENST00000427943 CHD1O14646 1710 aa32.97■■■□□ 2.87
PSPC1-202ENST00000427943 WDR97A6NE52 1622 aa32.89■■■□□ 2.86
PSPC1-202ENST00000427943 TDRD9Q8NDG6 1382 aaKnown RBP32.87■■■□□ 2.85
PSPC1-202ENST00000427943 TRIM41Q8WV44 630 aa32.86■■■□□ 2.85
PSPC1-202ENST00000427943 RIMBP3CA6NJZ7 1639 aa32.78■■■□□ 2.84
PSPC1-202ENST00000427943 RIMBP3BA6NNM3 1639 aa32.78■■■□□ 2.84
PSPC1-202ENST00000427943 RIMBP3Q9UFD9 1639 aa32.78■■■□□ 2.84
PSPC1-202ENST00000427943 SNAPC4Q5SXM2 1469 aa32.75■■■□□ 2.83
PSPC1-202ENST00000427943 PBRM1Q86U86 1689 aa32.75■■■□□ 2.83
PSPC1-202ENST00000427943 BIVM-ERCC5R4GMW8 1640 aa32.72■■■□□ 2.83
PSPC1-202ENST00000427943 FBLN2P98095 1184 aa32.7■■■□□ 2.83
PSPC1-202ENST00000427943 SYNJ1O43426 1573 aa32.68■■■□□ 2.82
PSPC1-202ENST00000427943 GRIN2BQ13224 1484 aa32.67■■■□□ 2.82
PSPC1-202ENST00000427943 TOP2BQ02880 1626 aa32.67■■■□□ 2.82
PSPC1-202ENST00000427943 ARHGEF11O15085 1522 aa32.66■■■□□ 2.82
PSPC1-202ENST00000427943 ABCA10Q8WWZ4 1543 aa32.66■■■□□ 2.82
PSPC1-202ENST00000427943 ABCA5Q8WWZ7 1642 aa32.66■■■□□ 2.82
PSPC1-202ENST00000427943 MAGI1Q96QZ7 1491 aaPredicted RBP32.64■■■□□ 2.82
PSPC1-202ENST00000427943 WRNQ14191 1432 aaPredicted RBP eCLIP32.63■■■□□ 2.811e-6■■■■■ 58.5
PSPC1-202ENST00000427943 GAPVD1Q14C86 1478 aa32.61■■■□□ 2.81
PSPC1-202ENST00000427943 SYNJ2O15056 1496 aa32.53■■■□□ 2.8
PSPC1-202ENST00000427943 CHMP7Q8WUX9 453 aaPredicted RBP32.5■■■□□ 2.79
PSPC1-202ENST00000427943 CLASP1Q7Z460 1538 aa32.49■■■□□ 2.79
PSPC1-202ENST00000427943 ADAMTS12P58397 1594 aa32.38■■■□□ 2.77
PSPC1-202ENST00000427943 ARAP1Q96P48 1450 aa32.37■■■□□ 2.77
PSPC1-202ENST00000427943 CYB5RLQ6IPT4 315 aa32.3■■■□□ 2.76
PSPC1-202ENST00000427943 GRIN2AQ12879 1464 aa32.28■■■□□ 2.76
PSPC1-202ENST00000427943 ERICH3Q5RHP9 1530 aa32.26■■■□□ 2.76
PSPC1-202ENST00000427943 CEP170Q5SW79 1584 aa32.2■■■□□ 2.75
PSPC1-202ENST00000427943 FHAD1B1AJZ9 1412 aa32.2■■■□□ 2.75
PSPC1-202ENST00000427943 NUP160Q12769 1436 aa32.12■■■□□ 2.73
PSPC1-202ENST00000427943 ERCC6L2Q5T890 1561 aa32.05■■■□□ 2.72
PSPC1-202ENST00000427943 SHROOM2Q13796 1616 aa32.02■■■□□ 2.72
PSPC1-202ENST00000427943 KIF27Q86VH2 1401 aa31.96■■■□□ 2.71
PSPC1-202ENST00000427943 CUL7Q14999 1698 aa31.95■■■□□ 2.7
PSPC1-202ENST00000427943 RUSC2Q8N2Y8 1516 aa31.93■■■□□ 2.7
PSPC1-202ENST00000427943 IGF1RP08069 1367 aa31.85■■■□□ 2.69
PSPC1-202ENST00000427943 TRHP20396 242 aaPredicted RBP31.84■■■□□ 2.69
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms