RNA–Protein interactions for RNA: ENST00000427746.1

HLCS-204, Transcript of holocarboxylase synthetase, humanhuman

TSL 3

Gene HLCS, Length 666 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLCS-204ENST00000427746 NISCHQ9Y2I1 1504 aa47.88■■■■■ 5.26
HLCS-204ENST00000427746 CCDC180Q9P1Z9 1646 aa42.75■■■■■ 4.43
HLCS-204ENST00000427746 ABCC9O60706 1549 aa42.23■■■■■ 4.35
HLCS-204ENST00000427746 RB1CC1Q8TDY2 1594 aa40.44■■■■■ 4.06
HLCS-204ENST00000427746 NACADO15069 1562 aa40.3■■■■■ 4.04
HLCS-204ENST00000427746 DCAF8L2P0C7V8 631 aa40.09■■■■■ 4.01
HLCS-204ENST00000427746 MYO15BQ96JP2 1530 aa39.96■■■■□ 3.99
HLCS-204ENST00000427746 ZCCHC6Q5VYS8 1495 aaKnown RBP39.8■■■■□ 3.96
HLCS-204ENST00000427746 DCAF1Q9Y4B6 1507 aa39.61■■■■□ 3.93
HLCS-204ENST00000427746 UNC13AQ9UPW8 1703 aa39.52■■■■□ 3.92
HLCS-204ENST00000427746 PABPN1Q86U42 306 aaKnown RBP eCLIP39.38■■■■□ 3.89
HLCS-204ENST00000427746 BICRAQ9NZM4 1560 aa39.28■■■■□ 3.88
HLCS-204ENST00000427746 DNAJC5BQ9UF47 199 aa39.22■■■■□ 3.87
HLCS-204ENST00000427746 SCRIBQ14160 1630 aa38.94■■■■□ 3.82
HLCS-204ENST00000427746 SHROOM4Q9ULL8 1493 aa38.81■■■■□ 3.8
HLCS-204ENST00000427746 EIF4G1Q04637 1599 aaKnown RBP38.25■■■■□ 3.71
HLCS-204ENST00000427746 CC2D2AQ9P2K1 1620 aa38.2■■■■□ 3.7
HLCS-204ENST00000427746 CECR2Q9BXF3 1484 aa38■■■■□ 3.67
HLCS-204ENST00000427746 SMARCA4P51532 1647 aa37.23■■■■□ 3.55
HLCS-204ENST00000427746 NCAPD3P42695 1498 aa37.21■■■■□ 3.55
HLCS-204ENST00000427746 ATAD2BQ9ULI0 1458 aa37.16■■■■□ 3.54
HLCS-204ENST00000427746 BAZ1AQ9NRL2 1556 aaPredicted RBP37.12■■■■□ 3.53
HLCS-204ENST00000427746 SMARCA2P51531 1590 aa37.07■■■■□ 3.52
HLCS-204ENST00000427746 HMGXB3Q12766 1538 aa36.98■■■■□ 3.51
HLCS-204ENST00000427746 PEG3Q9GZU2 1588 aa36.91■■■■□ 3.5
HLCS-204ENST00000427746 MROH2BQ7Z745 1585 aa36.9■■■■□ 3.5
HLCS-204ENST00000427746 BAZ1BQ9UIG0 1483 aaKnown RBP36.8■■■■□ 3.48
HLCS-204ENST00000427746 WIZO95785 1651 aa36.45■■■■□ 3.43
HLCS-204ENST00000427746 NESP48681 1621 aa36.44■■■■□ 3.42
HLCS-204ENST00000427746 ERCC6Q03468 1493 aa36.4■■■■□ 3.42
HLCS-204ENST00000427746 RSF1Q96T23 1441 aaPredicted RBP36.32■■■■□ 3.4
HLCS-204ENST00000427746 LAMC3Q9Y6N6 1575 aa36.27■■■■□ 3.4
HLCS-204ENST00000427746 CUX2O14529 1486 aa36.23■■■■□ 3.39
HLCS-204ENST00000427746 CADPSQ9ULU8 1353 aa36.09■■■■□ 3.37
HLCS-204ENST00000427746 TOP2AP11388 1531 aaKnown RBP36.04■■■■□ 3.36
HLCS-204ENST00000427746 PDS5BQ9NTI5 1447 aa36.03■■■■□ 3.36
HLCS-204ENST00000427746 THOC2Q8NI27 1593 aaKnown RBP35.99■■■■□ 3.35
HLCS-204ENST00000427746 KIF21AQ7Z4S6 1674 aa35.97■■■■□ 3.35
HLCS-204ENST00000427746 CFTRP13569 1480 aa35.8■■■■□ 3.32
HLCS-204ENST00000427746 MRC2Q9UBG0 1479 aa35.7■■■■□ 3.31
HLCS-204ENST00000427746 FANCD2Q9BXW9 1451 aa35.67■■■■□ 3.3
HLCS-204ENST00000427746 CEP164Q9UPV0 1460 aa35.65■■■■□ 3.3
HLCS-204ENST00000427746 DNAJC5Q9H3Z4 198 aa35.64■■■■□ 3.3
HLCS-204ENST00000427746 CCDC88BA6NC98 1476 aa35.64■■■■□ 3.3
HLCS-204ENST00000427746 WDR62O43379 1518 aa35.62■■■■□ 3.29
HLCS-204ENST00000427746 PRDM2Q13029 1718 aa35.43■■■■□ 3.26
HLCS-204ENST00000427746 URB2Q14146 1524 aaKnown RBP35.36■■■■□ 3.25
HLCS-204ENST00000427746 TOPBP1Q92547 1522 aa35.06■■■■□ 3.2
HLCS-204ENST00000427746 ABCC8Q09428 1581 aa35.01■■■■□ 3.2
HLCS-204ENST00000427746 SUPT5HO00267 1087 aaKnown RBP34.99■■■■□ 3.19
HLCS-204ENST00000427746 DNMBPQ6XZF7 1577 aa34.96■■■■□ 3.19
HLCS-204ENST00000427746 IFT140Q96RY7 1462 aa34.93■■■■□ 3.18
HLCS-204ENST00000427746 ZNF608Q9ULD9 1512 aaPredicted RBP34.83■■■■□ 3.17
HLCS-204ENST00000427746 POLA1P09884 1462 aaPredicted RBP34.73■■■■□ 3.15
HLCS-204ENST00000427746 TARBP1Q13395 1621 aaKnown RBP34.72■■■■□ 3.15
HLCS-204ENST00000427746 EIF4G3O43432 1585 aaKnown RBP34.66■■■■□ 3.14
HLCS-204ENST00000427746 CUX1P39880 1505 aa34.63■■■■□ 3.13
HLCS-204ENST00000427746 OSCARQ8IYS5 282 aa34.62■■■■□ 3.13
HLCS-204ENST00000427746 RAD54L2Q9Y4B4 1467 aa34.58■■■■□ 3.13
HLCS-204ENST00000427746 AQRO60306 1485 aaKnown RBP eCLIP34.57■■■■□ 3.12
HLCS-204ENST00000427746 FGD5Q6ZNL6 1462 aa34.57■■■■□ 3.12
HLCS-204ENST00000427746 SOGA1O94964 1423 aa34.56■■■■□ 3.12
HLCS-204ENST00000427746 TDRD9Q8NDG6 1382 aaKnown RBP34.43■■■■□ 3.1
HLCS-204ENST00000427746 WDR97A6NE52 1622 aa34.41■■■■□ 3.1
HLCS-204ENST00000427746 CHD1O14646 1710 aa34.28■■■■□ 3.08
HLCS-204ENST00000427746 SNAPC4Q5SXM2 1469 aa34.23■■■■□ 3.07
HLCS-204ENST00000427746 ABCA10Q8WWZ4 1543 aa34.23■■■■□ 3.07
HLCS-204ENST00000427746 WRNQ14191 1432 aaPredicted RBP eCLIP34.22■■■■□ 3.07
HLCS-204ENST00000427746 GRIN2BQ13224 1484 aa34.21■■■■□ 3.07
HLCS-204ENST00000427746 TRIM41Q8WV44 630 aa34.21■■■■□ 3.07
HLCS-204ENST00000427746 TOP2BQ02880 1626 aa34.21■■■■□ 3.07
HLCS-204ENST00000427746 BIVM-ERCC5R4GMW8 1640 aa34.21■■■■□ 3.07
HLCS-204ENST00000427746 SYNJ1O43426 1573 aa34.19■■■■□ 3.06
HLCS-204ENST00000427746 FBLN2P98095 1184 aa34.18■■■■□ 3.06
HLCS-204ENST00000427746 MAGI1Q96QZ7 1491 aaPredicted RBP34.17■■■■□ 3.06
HLCS-204ENST00000427746 GAPVD1Q14C86 1478 aa34.15■■■■□ 3.06
HLCS-204ENST00000427746 RIMBP3CA6NJZ7 1639 aa34.13■■■■□ 3.05
HLCS-204ENST00000427746 RIMBP3BA6NNM3 1639 aa34.13■■■■□ 3.05
HLCS-204ENST00000427746 ABCA5Q8WWZ7 1642 aa34.13■■■■□ 3.05
HLCS-204ENST00000427746 RIMBP3Q9UFD9 1639 aa34.13■■■■□ 3.05
HLCS-204ENST00000427746 PBRM1Q86U86 1689 aa34.09■■■■□ 3.05
HLCS-204ENST00000427746 ARHGEF11O15085 1522 aa34.09■■■■□ 3.05
HLCS-204ENST00000427746 SYNJ2O15056 1496 aa34.05■■■■□ 3.04
HLCS-204ENST00000427746 CHMP7Q8WUX9 453 aaPredicted RBP34.04■■■■□ 3.04
HLCS-204ENST00000427746 CLASP1Q7Z460 1538 aa33.95■■■■□ 3.03
HLCS-204ENST00000427746 ADAMTS12P58397 1594 aa33.83■■■■□ 3.01
HLCS-204ENST00000427746 ERICH3Q5RHP9 1530 aa33.8■■■■□ 3
HLCS-204ENST00000427746 ARAP1Q96P48 1450 aa33.8■■■■□ 3
HLCS-204ENST00000427746 GRIN2AQ12879 1464 aa33.78■■■■□ 3
HLCS-204ENST00000427746 CYB5RLQ6IPT4 315 aa33.76■■■□□ 2.99
HLCS-204ENST00000427746 FHAD1B1AJZ9 1412 aa33.75■■■□□ 2.99
HLCS-204ENST00000427746 NUP160Q12769 1436 aa33.67■■■□□ 2.98
HLCS-204ENST00000427746 CEP170Q5SW79 1584 aa33.64■■■□□ 2.98
HLCS-204ENST00000427746 KIF27Q86VH2 1401 aa33.53■■■□□ 2.96
HLCS-204ENST00000427746 IGF1RP08069 1367 aa33.49■■■□□ 2.95
HLCS-204ENST00000427746 SHROOM2Q13796 1616 aa33.46■■■□□ 2.95
HLCS-204ENST00000427746 ERCC6L2Q5T890 1561 aa33.44■■■□□ 2.94
HLCS-204ENST00000427746 CUL7Q14999 1698 aa33.39■■■□□ 2.94
HLCS-204ENST00000427746 RUSC2Q8N2Y8 1516 aa33.34■■■□□ 2.93
HLCS-204ENST00000427746 JPH4Q96JJ6 628 aa33.29■■■□□ 2.92
Retrieved 100 of 20,778 RNA–protein pairs in 98 ms