RNA–Protein interactions for RNA: ENST00000427563.1

COL9A2-204, Transcript of collagen type IX alpha 2 chain, humanhuman

TSL 3

Gene COL9A2, Length 548 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A2-204ENST00000427563 NISCHQ9Y2I1 1504 aa47.46■■■■■ 5.19
COL9A2-204ENST00000427563 CCDC180Q9P1Z9 1646 aa42.34■■■■■ 4.37
COL9A2-204ENST00000427563 ABCC9O60706 1549 aa41.76■■■■■ 4.28
COL9A2-204ENST00000427563 RB1CC1Q8TDY2 1594 aa39.97■■■■□ 3.99
COL9A2-204ENST00000427563 NACADO15069 1562 aa39.84■■■■□ 3.97
COL9A2-204ENST00000427563 DCAF8L2P0C7V8 631 aa39.65■■■■□ 3.94
COL9A2-204ENST00000427563 MYO15BQ96JP2 1530 aa39.5■■■■□ 3.91
COL9A2-204ENST00000427563 ZCCHC6Q5VYS8 1495 aaKnown RBP39.49■■■■□ 3.91
COL9A2-204ENST00000427563 UNC13AQ9UPW8 1703 aa39.24■■■■□ 3.87
COL9A2-204ENST00000427563 DCAF1Q9Y4B6 1507 aa39.23■■■■□ 3.87
COL9A2-204ENST00000427563 PABPN1Q86U42 306 aaKnown RBP eCLIP38.95■■■■□ 3.837e-8■■■■■ 27.9
COL9A2-204ENST00000427563 BICRAQ9NZM4 1560 aa38.92■■■■□ 3.82
COL9A2-204ENST00000427563 DNAJC5BQ9UF47 199 aa38.73■■■■□ 3.79
COL9A2-204ENST00000427563 SCRIBQ14160 1630 aa38.63■■■■□ 3.78
COL9A2-204ENST00000427563 SHROOM4Q9ULL8 1493 aa38.29■■■■□ 3.72
COL9A2-204ENST00000427563 EIF4G1Q04637 1599 aaKnown RBP37.84■■■■□ 3.65
COL9A2-204ENST00000427563 CC2D2AQ9P2K1 1620 aa37.79■■■■□ 3.64
COL9A2-204ENST00000427563 CECR2Q9BXF3 1484 aa37.52■■■■□ 3.6
COL9A2-204ENST00000427563 SMARCA4P51532 1647 aa36.92■■■■□ 3.5
COL9A2-204ENST00000427563 NCAPD3P42695 1498 aa36.79■■■■□ 3.48
COL9A2-204ENST00000427563 ATAD2BQ9ULI0 1458 aa36.79■■■■□ 3.48
COL9A2-204ENST00000427563 BAZ1AQ9NRL2 1556 aaPredicted RBP36.76■■■■□ 3.48
COL9A2-204ENST00000427563 SMARCA2P51531 1590 aa36.66■■■■□ 3.46
COL9A2-204ENST00000427563 MROH2BQ7Z745 1585 aa36.62■■■■□ 3.45
COL9A2-204ENST00000427563 HMGXB3Q12766 1538 aa36.58■■■■□ 3.45
COL9A2-204ENST00000427563 PEG3Q9GZU2 1588 aa36.56■■■■□ 3.44
COL9A2-204ENST00000427563 BAZ1BQ9UIG0 1483 aaKnown RBP36.41■■■■□ 3.42
COL9A2-204ENST00000427563 WIZO95785 1651 aa36.23■■■■□ 3.39
COL9A2-204ENST00000427563 NESP48681 1621 aa36.09■■■■□ 3.37
COL9A2-204ENST00000427563 RSF1Q96T23 1441 aaPredicted RBP36.04■■■■□ 3.36
COL9A2-204ENST00000427563 ERCC6Q03468 1493 aa35.92■■■■□ 3.34
COL9A2-204ENST00000427563 LAMC3Q9Y6N6 1575 aa35.86■■■■□ 3.33
COL9A2-204ENST00000427563 TOP2AP11388 1531 aaKnown RBP35.75■■■■□ 3.31
COL9A2-204ENST00000427563 CUX2O14529 1486 aa35.7■■■■□ 3.31
COL9A2-204ENST00000427563 CADPSQ9ULU8 1353 aa35.67■■■■□ 3.3
COL9A2-204ENST00000427563 KIF21AQ7Z4S6 1674 aa35.66■■■■□ 3.3
COL9A2-204ENST00000427563 THOC2Q8NI27 1593 aaKnown RBP35.63■■■■□ 3.29
COL9A2-204ENST00000427563 PDS5BQ9NTI5 1447 aa35.57■■■■□ 3.28
COL9A2-204ENST00000427563 CFTRP13569 1480 aa35.42■■■■□ 3.26
COL9A2-204ENST00000427563 CCDC88BA6NC98 1476 aa35.35■■■■□ 3.25
COL9A2-204ENST00000427563 FANCD2Q9BXW9 1451 aa35.29■■■■□ 3.24
COL9A2-204ENST00000427563 MRC2Q9UBG0 1479 aa35.29■■■■□ 3.24
COL9A2-204ENST00000427563 CEP164Q9UPV0 1460 aa35.25■■■■□ 3.23
COL9A2-204ENST00000427563 WDR62O43379 1518 aa35.22■■■■□ 3.23
COL9A2-204ENST00000427563 PRDM2Q13029 1718 aa35.18■■■■□ 3.22
COL9A2-204ENST00000427563 DNAJC5Q9H3Z4 198 aa35.11■■■■□ 3.21
COL9A2-204ENST00000427563 URB2Q14146 1524 aaKnown RBP35.02■■■■□ 3.2
COL9A2-204ENST00000427563 SUPT5HO00267 1087 aaKnown RBP34.78■■■■□ 3.16
COL9A2-204ENST00000427563 TOPBP1Q92547 1522 aa34.71■■■■□ 3.15
COL9A2-204ENST00000427563 DNMBPQ6XZF7 1577 aa34.63■■■■□ 3.13
COL9A2-204ENST00000427563 ABCC8Q09428 1581 aa34.57■■■■□ 3.13
COL9A2-204ENST00000427563 IFT140Q96RY7 1462 aa34.52■■■■□ 3.12
COL9A2-204ENST00000427563 ZNF608Q9ULD9 1512 aaPredicted RBP34.5■■■■□ 3.11
COL9A2-204ENST00000427563 TARBP1Q13395 1621 aaKnown RBP34.41■■■■□ 3.1
COL9A2-204ENST00000427563 POLA1P09884 1462 aaPredicted RBP34.4■■■■□ 3.1
COL9A2-204ENST00000427563 CUX1P39880 1505 aa34.37■■■■□ 3.09
COL9A2-204ENST00000427563 EIF4G3O43432 1585 aaKnown RBP34.32■■■■□ 3.09
COL9A2-204ENST00000427563 RAD54L2Q9Y4B4 1467 aa34.28■■■■□ 3.08
COL9A2-204ENST00000427563 FGD5Q6ZNL6 1462 aa34.27■■■■□ 3.08
COL9A2-204ENST00000427563 AQRO60306 1485 aaKnown RBP eCLIP34.21■■■■□ 3.07
COL9A2-204ENST00000427563 SOGA1O94964 1423 aa34.2■■■■□ 3.06
COL9A2-204ENST00000427563 OSCARQ8IYS5 282 aa34.1■■■■□ 3.05
COL9A2-204ENST00000427563 TDRD9Q8NDG6 1382 aaKnown RBP34.08■■■■□ 3.05
COL9A2-204ENST00000427563 WDR97A6NE52 1622 aa34.08■■■■□ 3.05
COL9A2-204ENST00000427563 CHD1O14646 1710 aa33.99■■■■□ 3.03
COL9A2-204ENST00000427563 SYNJ1O43426 1573 aa33.98■■■■□ 3.03
COL9A2-204ENST00000427563 BIVM-ERCC5R4GMW8 1640 aa33.97■■■■□ 3.03
COL9A2-204ENST00000427563 TOP2BQ02880 1626 aa33.95■■■■□ 3.03
COL9A2-204ENST00000427563 WRNQ14191 1432 aaPredicted RBP eCLIP33.93■■■■□ 3.02
COL9A2-204ENST00000427563 ABCA10Q8WWZ4 1543 aa33.9■■■■□ 3.02
COL9A2-204ENST00000427563 SNAPC4Q5SXM2 1469 aa33.88■■■■□ 3.01
COL9A2-204ENST00000427563 ABCA5Q8WWZ7 1642 aa33.85■■■■□ 3.01
COL9A2-204ENST00000427563 PBRM1Q86U86 1689 aa33.84■■■■□ 3.01
COL9A2-204ENST00000427563 GRIN2BQ13224 1484 aa33.83■■■■□ 3.01
COL9A2-204ENST00000427563 GAPVD1Q14C86 1478 aa33.81■■■■□ 3
COL9A2-204ENST00000427563 MAGI1Q96QZ7 1491 aaPredicted RBP33.78■■■■□ 3
COL9A2-204ENST00000427563 FBLN2P98095 1184 aa33.75■■■□□ 2.99
COL9A2-204ENST00000427563 RIMBP3CA6NJZ7 1639 aa33.75■■■□□ 2.99
COL9A2-204ENST00000427563 RIMBP3BA6NNM3 1639 aa33.75■■■□□ 2.99
COL9A2-204ENST00000427563 RIMBP3Q9UFD9 1639 aa33.75■■■□□ 2.99
COL9A2-204ENST00000427563 TRIM41Q8WV44 630 aa33.68■■■□□ 2.98
COL9A2-204ENST00000427563 ARHGEF11O15085 1522 aa33.67■■■□□ 2.98
COL9A2-204ENST00000427563 SYNJ2O15056 1496 aa33.66■■■□□ 2.98
COL9A2-204ENST00000427563 CLASP1Q7Z460 1538 aa33.6■■■□□ 2.97
COL9A2-204ENST00000427563 CHMP7Q8WUX9 453 aaPredicted RBP33.6■■■□□ 2.97
COL9A2-204ENST00000427563 ADAMTS12P58397 1594 aa33.54■■■□□ 2.96
COL9A2-204ENST00000427563 ERICH3Q5RHP9 1530 aa33.47■■■□□ 2.95
COL9A2-204ENST00000427563 GRIN2AQ12879 1464 aa33.43■■■□□ 2.94
COL9A2-204ENST00000427563 ARAP1Q96P48 1450 aa33.41■■■□□ 2.94
COL9A2-204ENST00000427563 FHAD1B1AJZ9 1412 aa33.38■■■□□ 2.93
COL9A2-204ENST00000427563 CEP170Q5SW79 1584 aa33.34■■■□□ 2.93
COL9A2-204ENST00000427563 NUP160Q12769 1436 aa33.32■■■□□ 2.92
COL9A2-204ENST00000427563 CYB5RLQ6IPT4 315 aa33.3■■■□□ 2.92
COL9A2-204ENST00000427563 KIF27Q86VH2 1401 aa33.2■■■□□ 2.91
COL9A2-204ENST00000427563 IGF1RP08069 1367 aa33.19■■■□□ 2.9
COL9A2-204ENST00000427563 ERCC6L2Q5T890 1561 aa33.17■■■□□ 2.9
COL9A2-204ENST00000427563 SHROOM2Q13796 1616 aa33.14■■■□□ 2.9
COL9A2-204ENST00000427563 CUL7Q14999 1698 aa33.1■■■□□ 2.89
COL9A2-204ENST00000427563 RUSC2Q8N2Y8 1516 aa33.06■■■□□ 2.88
COL9A2-204ENST00000427563 CARMIL1Q5VZK9 1371 aa32.94■■■□□ 2.86
Retrieved 100 of 20,778 RNA–protein pairs in 128.3 ms