RNA–Protein interactions for RNA: ENST00000427506.5

GPC1-205, Transcript of glypican 1, humanhuman

TSL 3

Gene GPC1, Length 573 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-205ENST00000427506 NISCHQ9Y2I1 1504 aa45.26■■■■■ 4.84
GPC1-205ENST00000427506 CCDC180Q9P1Z9 1646 aa40.38■■■■■ 4.05
GPC1-205ENST00000427506 ABCC9O60706 1549 aa40.01■■■■□ 3.99
GPC1-205ENST00000427506 RB1CC1Q8TDY2 1594 aa38.26■■■■□ 3.72
GPC1-205ENST00000427506 DCAF8L2P0C7V8 631 aa38.17■■■■□ 3.7
GPC1-205ENST00000427506 NACADO15069 1562 aa38.1■■■■□ 3.69
GPC1-205ENST00000427506 MYO15BQ96JP2 1530 aa37.68■■■■□ 3.62
GPC1-205ENST00000427506 ZCCHC6Q5VYS8 1495 aaKnown RBP37.59■■■■□ 3.61
GPC1-205ENST00000427506 DCAF1Q9Y4B6 1507 aa37.38■■■■□ 3.57
GPC1-205ENST00000427506 PABPN1Q86U42 306 aaKnown RBP eCLIP37.36■■■■□ 3.57
GPC1-205ENST00000427506 UNC13AQ9UPW8 1703 aa37.31■■■■□ 3.56
GPC1-205ENST00000427506 DNAJC5BQ9UF47 199 aa37.08■■■■□ 3.53
GPC1-205ENST00000427506 BICRAQ9NZM4 1560 aa37.07■■■■□ 3.52
GPC1-205ENST00000427506 SCRIBQ14160 1630 aa36.88■■■■□ 3.5
GPC1-205ENST00000427506 SHROOM4Q9ULL8 1493 aa36.63■■■■□ 3.45
GPC1-205ENST00000427506 EIF4G1Q04637 1599 aaKnown RBP36.16■■■■□ 3.38
GPC1-205ENST00000427506 CC2D2AQ9P2K1 1620 aa36.12■■■■□ 3.37
GPC1-205ENST00000427506 CECR2Q9BXF3 1484 aa35.99■■■■□ 3.35
GPC1-205ENST00000427506 SMARCA4P51532 1647 aa35.2■■■■□ 3.23
GPC1-205ENST00000427506 NCAPD3P42695 1498 aa35.16■■■■□ 3.22
GPC1-205ENST00000427506 ATAD2BQ9ULI0 1458 aa35.12■■■■□ 3.21
GPC1-205ENST00000427506 BAZ1AQ9NRL2 1556 aaPredicted RBP35.12■■■■□ 3.21
GPC1-205ENST00000427506 SMARCA2P51531 1590 aa35.07■■■■□ 3.2
GPC1-205ENST00000427506 HMGXB3Q12766 1538 aa34.93■■■■□ 3.18
GPC1-205ENST00000427506 MROH2BQ7Z745 1585 aa34.88■■■■□ 3.17
GPC1-205ENST00000427506 BAZ1BQ9UIG0 1483 aaKnown RBP34.84■■■■□ 3.17
GPC1-205ENST00000427506 PEG3Q9GZU2 1588 aa34.82■■■■□ 3.16
GPC1-205ENST00000427506 ERCC6Q03468 1493 aa34.55■■■■□ 3.12
GPC1-205ENST00000427506 WIZO95785 1651 aa34.49■■■■□ 3.11
GPC1-205ENST00000427506 NESP48681 1621 aa34.48■■■■□ 3.11
GPC1-205ENST00000427506 RSF1Q96T23 1441 aaPredicted RBP34.34■■■■□ 3.09
GPC1-205ENST00000427506 LAMC3Q9Y6N6 1575 aa34.3■■■■□ 3.08
GPC1-205ENST00000427506 CUX2O14529 1486 aa34.26■■■■□ 3.07
GPC1-205ENST00000427506 CADPSQ9ULU8 1353 aa34.15■■■■□ 3.06
GPC1-205ENST00000427506 PDS5BQ9NTI5 1447 aa34.13■■■■□ 3.05
GPC1-205ENST00000427506 TOP2AP11388 1531 aaKnown RBP34.09■■■■□ 3.05
GPC1-205ENST00000427506 KIF21AQ7Z4S6 1674 aa34.02■■■■□ 3.04
GPC1-205ENST00000427506 THOC2Q8NI27 1593 aaKnown RBP33.98■■■■□ 3.03
GPC1-205ENST00000427506 CFTRP13569 1480 aa33.82■■■■□ 3.01
GPC1-205ENST00000427506 MRC2Q9UBG0 1479 aa33.79■■■■□ 3
GPC1-205ENST00000427506 FANCD2Q9BXW9 1451 aa33.76■■■■□ 3
GPC1-205ENST00000427506 CEP164Q9UPV0 1460 aa33.76■■■■□ 3
GPC1-205ENST00000427506 DNAJC5Q9H3Z4 198 aa33.74■■■□□ 2.99
GPC1-205ENST00000427506 CCDC88BA6NC98 1476 aa33.71■■■□□ 2.99
GPC1-205ENST00000427506 WDR62O43379 1518 aa33.65■■■□□ 2.98
GPC1-205ENST00000427506 PRDM2Q13029 1718 aa33.48■■■□□ 2.95
GPC1-205ENST00000427506 URB2Q14146 1524 aaKnown RBP33.42■■■□□ 2.94
GPC1-205ENST00000427506 SUPT5HO00267 1087 aaKnown RBP33.29■■■□□ 2.92
GPC1-205ENST00000427506 TOPBP1Q92547 1522 aa33.15■■■□□ 2.9
GPC1-205ENST00000427506 ABCC8Q09428 1581 aa33.13■■■□□ 2.89
GPC1-205ENST00000427506 DNMBPQ6XZF7 1577 aa33.07■■■□□ 2.88
GPC1-205ENST00000427506 IFT140Q96RY7 1462 aa33.06■■■□□ 2.88
GPC1-205ENST00000427506 ZNF608Q9ULD9 1512 aaPredicted RBP32.95■■■□□ 2.87
GPC1-205ENST00000427506 OSCARQ8IYS5 282 aa32.85■■■□□ 2.85
GPC1-205ENST00000427506 POLA1P09884 1462 aaPredicted RBP32.85■■■□□ 2.85
GPC1-205ENST00000427506 TARBP1Q13395 1621 aaKnown RBP32.79■■■□□ 2.84
GPC1-205ENST00000427506 EIF4G3O43432 1585 aaKnown RBP32.78■■■□□ 2.84
GPC1-205ENST00000427506 SOGA1O94964 1423 aa32.76■■■□□ 2.83
GPC1-205ENST00000427506 CUX1P39880 1505 aa32.74■■■□□ 2.83
GPC1-205ENST00000427506 AQRO60306 1485 aaKnown RBP eCLIP32.74■■■□□ 2.83
GPC1-205ENST00000427506 RAD54L2Q9Y4B4 1467 aa32.74■■■□□ 2.83
GPC1-205ENST00000427506 FGD5Q6ZNL6 1462 aa32.73■■■□□ 2.83
GPC1-205ENST00000427506 TDRD9Q8NDG6 1382 aaKnown RBP32.63■■■□□ 2.81
GPC1-205ENST00000427506 TRIM41Q8WV44 630 aa32.54■■■□□ 2.8
GPC1-205ENST00000427506 FBLN2P98095 1184 aa32.52■■■□□ 2.8
GPC1-205ENST00000427506 WDR97A6NE52 1622 aa32.5■■■□□ 2.79
GPC1-205ENST00000427506 CHD1O14646 1710 aa32.43■■■□□ 2.78
GPC1-205ENST00000427506 WRNQ14191 1432 aaPredicted RBP eCLIP32.42■■■□□ 2.78
GPC1-205ENST00000427506 SNAPC4Q5SXM2 1469 aa32.41■■■□□ 2.78
GPC1-205ENST00000427506 GRIN2BQ13224 1484 aa32.39■■■□□ 2.78
GPC1-205ENST00000427506 ABCA10Q8WWZ4 1543 aa32.36■■■□□ 2.77
GPC1-205ENST00000427506 GAPVD1Q14C86 1478 aa32.35■■■□□ 2.77
GPC1-205ENST00000427506 TOP2BQ02880 1626 aa32.34■■■□□ 2.77
GPC1-205ENST00000427506 CHMP7Q8WUX9 453 aaPredicted RBP32.33■■■□□ 2.77
GPC1-205ENST00000427506 MAGI1Q96QZ7 1491 aaPredicted RBP32.33■■■□□ 2.77
GPC1-205ENST00000427506 BIVM-ERCC5R4GMW8 1640 aa32.33■■■□□ 2.77
GPC1-205ENST00000427506 SYNJ1O43426 1573 aa32.32■■■□□ 2.77
GPC1-205ENST00000427506 RIMBP3CA6NJZ7 1639 aa32.29■■■□□ 2.76
GPC1-205ENST00000427506 RIMBP3BA6NNM3 1639 aa32.29■■■□□ 2.76
GPC1-205ENST00000427506 RIMBP3Q9UFD9 1639 aa32.29■■■□□ 2.76
GPC1-205ENST00000427506 PBRM1Q86U86 1689 aa32.25■■■□□ 2.75
GPC1-205ENST00000427506 ARHGEF11O15085 1522 aa32.25■■■□□ 2.75
GPC1-205ENST00000427506 ABCA5Q8WWZ7 1642 aa32.24■■■□□ 2.75
GPC1-205ENST00000427506 SYNJ2O15056 1496 aa32.23■■■□□ 2.75
GPC1-205ENST00000427506 CLASP1Q7Z460 1538 aa32.06■■■□□ 2.72
GPC1-205ENST00000427506 CYB5RLQ6IPT4 315 aa32.06■■■□□ 2.72
GPC1-205ENST00000427506 ADAMTS12P58397 1594 aa31.98■■■□□ 2.71
GPC1-205ENST00000427506 GRIN2AQ12879 1464 aa31.97■■■□□ 2.71
GPC1-205ENST00000427506 ERICH3Q5RHP9 1530 aa31.96■■■□□ 2.71
GPC1-205ENST00000427506 ARAP1Q96P48 1450 aa31.96■■■□□ 2.71
GPC1-205ENST00000427506 FHAD1B1AJZ9 1412 aa31.95■■■□□ 2.71
GPC1-205ENST00000427506 NUP160Q12769 1436 aa31.82■■■□□ 2.68
GPC1-205ENST00000427506 CEP170Q5SW79 1584 aa31.81■■■□□ 2.68
GPC1-205ENST00000427506 KIF27Q86VH2 1401 aa31.78■■■□□ 2.68
GPC1-205ENST00000427506 IGF1RP08069 1367 aa31.68■■■□□ 2.66
GPC1-205ENST00000427506 ERCC6L2Q5T890 1561 aa31.62■■■□□ 2.65
GPC1-205ENST00000427506 TRHP20396 242 aaPredicted RBP31.6■■■□□ 2.65
GPC1-205ENST00000427506 CUL7Q14999 1698 aa31.59■■■□□ 2.65
GPC1-205ENST00000427506 SHROOM2Q13796 1616 aa31.59■■■□□ 2.65
GPC1-205ENST00000427506 JPH4Q96JJ6 628 aa31.56■■■□□ 2.64
Retrieved 100 of 20,778 RNA–protein pairs in 296.3 ms