RNA–Protein interactions for RNA: ENST00000427449.1

HLA-DQB2-230, Transcript of major histocompatibility complex, class II, DQ beta 2, humanhuman

Gene HLA-DQB2, Length 721 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB2-230ENST00000427449 NISCHQ9Y2I1 1504 aa40.27■■■■■ 4.04
HLA-DQB2-230ENST00000427449 CCDC180Q9P1Z9 1646 aa36.12■■■■□ 3.37
HLA-DQB2-230ENST00000427449 ABCC9O60706 1549 aa35.44■■■■□ 3.26
HLA-DQB2-230ENST00000427449 RB1CC1Q8TDY2 1594 aa33.98■■■■□ 3.03
HLA-DQB2-230ENST00000427449 NACADO15069 1562 aa33.88■■■■□ 3.01
HLA-DQB2-230ENST00000427449 MYO15BQ96JP2 1530 aa33.64■■■□□ 2.98
HLA-DQB2-230ENST00000427449 UNC13AQ9UPW8 1703 aa33.59■■■□□ 2.97
HLA-DQB2-230ENST00000427449 ZCCHC6Q5VYS8 1495 aaKnown RBP33.55■■■□□ 2.96
HLA-DQB2-230ENST00000427449 DCAF1Q9Y4B6 1507 aa33.37■■■□□ 2.93
HLA-DQB2-230ENST00000427449 BICRAQ9NZM4 1560 aa33.22■■■□□ 2.91
HLA-DQB2-230ENST00000427449 DCAF8L2P0C7V8 631 aa33.22■■■□□ 2.91
HLA-DQB2-230ENST00000427449 DNAJC5BQ9UF47 199 aa32.92■■■□□ 2.86
HLA-DQB2-230ENST00000427449 PABPN1Q86U42 306 aaKnown RBP eCLIP32.9■■■□□ 2.86
HLA-DQB2-230ENST00000427449 SCRIBQ14160 1630 aa32.8■■■□□ 2.84
HLA-DQB2-230ENST00000427449 SHROOM4Q9ULL8 1493 aa32.66■■■□□ 2.82
HLA-DQB2-230ENST00000427449 EIF4G1Q04637 1599 aaKnown RBP32.22■■■□□ 2.75
HLA-DQB2-230ENST00000427449 CC2D2AQ9P2K1 1620 aa32.18■■■□□ 2.74
HLA-DQB2-230ENST00000427449 CECR2Q9BXF3 1484 aa31.87■■■□□ 2.69
HLA-DQB2-230ENST00000427449 SMARCA4P51532 1647 aa31.41■■■□□ 2.62
HLA-DQB2-230ENST00000427449 NCAPD3P42695 1498 aa31.25■■■□□ 2.59
HLA-DQB2-230ENST00000427449 ATAD2BQ9ULI0 1458 aa31.22■■■□□ 2.59
HLA-DQB2-230ENST00000427449 BAZ1AQ9NRL2 1556 aaPredicted RBP31.19■■■□□ 2.58
HLA-DQB2-230ENST00000427449 PEG3Q9GZU2 1588 aa31.17■■■□□ 2.58
HLA-DQB2-230ENST00000427449 HMGXB3Q12766 1538 aa31.16■■■□□ 2.58
HLA-DQB2-230ENST00000427449 SMARCA2P51531 1590 aa31.13■■■□□ 2.57
HLA-DQB2-230ENST00000427449 MROH2BQ7Z745 1585 aa31.07■■■□□ 2.56
HLA-DQB2-230ENST00000427449 BAZ1BQ9UIG0 1483 aaKnown RBP30.86■■■□□ 2.53
HLA-DQB2-230ENST00000427449 WIZO95785 1651 aa30.76■■■□□ 2.51
HLA-DQB2-230ENST00000427449 NESP48681 1621 aa30.67■■■□□ 2.5
HLA-DQB2-230ENST00000427449 LAMC3Q9Y6N6 1575 aa30.53■■■□□ 2.48
HLA-DQB2-230ENST00000427449 RSF1Q96T23 1441 aaPredicted RBP30.48■■■□□ 2.47
HLA-DQB2-230ENST00000427449 THOC2Q8NI27 1593 aaKnown RBP30.45■■■□□ 2.47
HLA-DQB2-230ENST00000427449 KIF21AQ7Z4S6 1674 aa30.45■■■□□ 2.46
HLA-DQB2-230ENST00000427449 ERCC6Q03468 1493 aa30.43■■■□□ 2.46
HLA-DQB2-230ENST00000427449 CUX2O14529 1486 aa30.42■■■□□ 2.46
HLA-DQB2-230ENST00000427449 TOP2AP11388 1531 aaKnown RBP30.35■■■□□ 2.45
HLA-DQB2-230ENST00000427449 CADPSQ9ULU8 1353 aa30.2■■■□□ 2.43
HLA-DQB2-230ENST00000427449 PDS5BQ9NTI5 1447 aa30.11■■■□□ 2.41
HLA-DQB2-230ENST00000427449 PRDM2Q13029 1718 aa30.09■■■□□ 2.41
HLA-DQB2-230ENST00000427449 CFTRP13569 1480 aa30.07■■■□□ 2.4
HLA-DQB2-230ENST00000427449 WDR62O43379 1518 aa30.02■■■□□ 2.4
HLA-DQB2-230ENST00000427449 MRC2Q9UBG0 1479 aa29.98■■■□□ 2.39
HLA-DQB2-230ENST00000427449 CCDC88BA6NC98 1476 aa29.92■■■□□ 2.38
HLA-DQB2-230ENST00000427449 FANCD2Q9BXW9 1451 aa29.92■■■□□ 2.38
HLA-DQB2-230ENST00000427449 CEP164Q9UPV0 1460 aa29.9■■■□□ 2.38
HLA-DQB2-230ENST00000427449 DNAJC5Q9H3Z4 198 aa29.78■■■□□ 2.36
HLA-DQB2-230ENST00000427449 URB2Q14146 1524 aaKnown RBP29.77■■■□□ 2.36
HLA-DQB2-230ENST00000427449 TOPBP1Q92547 1522 aa29.47■■■□□ 2.31
HLA-DQB2-230ENST00000427449 DNMBPQ6XZF7 1577 aa29.43■■■□□ 2.3
HLA-DQB2-230ENST00000427449 TARBP1Q13395 1621 aaKnown RBP29.33■■■□□ 2.29
HLA-DQB2-230ENST00000427449 ZNF608Q9ULD9 1512 aaPredicted RBP29.3■■■□□ 2.28
HLA-DQB2-230ENST00000427449 ABCC8Q09428 1581 aa29.29■■■□□ 2.28
HLA-DQB2-230ENST00000427449 IFT140Q96RY7 1462 aa29.29■■■□□ 2.28
HLA-DQB2-230ENST00000427449 EIF4G3O43432 1585 aaKnown RBP29.26■■■□□ 2.27
HLA-DQB2-230ENST00000427449 POLA1P09884 1462 aaPredicted RBP29.2■■■□□ 2.26
HLA-DQB2-230ENST00000427449 CUX1P39880 1505 aa29.18■■■□□ 2.26
HLA-DQB2-230ENST00000427449 WDR97A6NE52 1622 aa29.12■■■□□ 2.25
HLA-DQB2-230ENST00000427449 SUPT5HO00267 1087 aaKnown RBP29.05■■■□□ 2.24
HLA-DQB2-230ENST00000427449 FGD5Q6ZNL6 1462 aa29.04■■■□□ 2.24
HLA-DQB2-230ENST00000427449 RAD54L2Q9Y4B4 1467 aa29.03■■■□□ 2.24
HLA-DQB2-230ENST00000427449 CHD1O14646 1710 aa29.01■■■□□ 2.23
HLA-DQB2-230ENST00000427449 AQRO60306 1485 aaKnown RBP eCLIP28.97■■■□□ 2.23
HLA-DQB2-230ENST00000427449 BIVM-ERCC5R4GMW8 1640 aa28.91■■■□□ 2.22
HLA-DQB2-230ENST00000427449 SOGA1O94964 1423 aa28.89■■■□□ 2.22
HLA-DQB2-230ENST00000427449 PBRM1Q86U86 1689 aa28.85■■■□□ 2.21
HLA-DQB2-230ENST00000427449 SYNJ1O43426 1573 aa28.84■■■□□ 2.21
HLA-DQB2-230ENST00000427449 ABCA5Q8WWZ7 1642 aa28.84■■■□□ 2.21
HLA-DQB2-230ENST00000427449 TOP2BQ02880 1626 aa28.83■■■□□ 2.21
HLA-DQB2-230ENST00000427449 OSCARQ8IYS5 282 aa28.8■■■□□ 2.2
HLA-DQB2-230ENST00000427449 RIMBP3CA6NJZ7 1639 aa28.79■■■□□ 2.2
HLA-DQB2-230ENST00000427449 RIMBP3BA6NNM3 1639 aa28.79■■■□□ 2.2
HLA-DQB2-230ENST00000427449 RIMBP3Q9UFD9 1639 aa28.79■■■□□ 2.2
HLA-DQB2-230ENST00000427449 TDRD9Q8NDG6 1382 aaKnown RBP28.78■■■□□ 2.2
HLA-DQB2-230ENST00000427449 ABCA10Q8WWZ4 1543 aa28.77■■■□□ 2.2
HLA-DQB2-230ENST00000427449 SNAPC4Q5SXM2 1469 aa28.74■■■□□ 2.19
HLA-DQB2-230ENST00000427449 MAGI1Q96QZ7 1491 aaPredicted RBP28.68■■■□□ 2.18
HLA-DQB2-230ENST00000427449 ARHGEF11O15085 1522 aa28.67■■■□□ 2.18
HLA-DQB2-230ENST00000427449 GRIN2BQ13224 1484 aa28.66■■■□□ 2.18
HLA-DQB2-230ENST00000427449 CLASP1Q7Z460 1538 aa28.66■■■□□ 2.18
HLA-DQB2-230ENST00000427449 WRNQ14191 1432 aaPredicted RBP eCLIP28.66■■■□□ 2.18
HLA-DQB2-230ENST00000427449 GAPVD1Q14C86 1478 aa28.62■■■□□ 2.17
HLA-DQB2-230ENST00000427449 SYNJ2O15056 1496 aa28.56■■■□□ 2.16
HLA-DQB2-230ENST00000427449 ADAMTS12P58397 1594 aa28.54■■■□□ 2.16
HLA-DQB2-230ENST00000427449 TRIM41Q8WV44 630 aa28.45■■■□□ 2.14
HLA-DQB2-230ENST00000427449 ARAP1Q96P48 1450 aa28.45■■■□□ 2.14
HLA-DQB2-230ENST00000427449 ERICH3Q5RHP9 1530 aa28.41■■■□□ 2.14
HLA-DQB2-230ENST00000427449 CEP170Q5SW79 1584 aa28.38■■■□□ 2.13
HLA-DQB2-230ENST00000427449 GRIN2AQ12879 1464 aa28.37■■■□□ 2.13
HLA-DQB2-230ENST00000427449 FBLN2P98095 1184 aa28.36■■■□□ 2.13
HLA-DQB2-230ENST00000427449 NUP160Q12769 1436 aa28.31■■■□□ 2.12
HLA-DQB2-230ENST00000427449 SHROOM2Q13796 1616 aa28.29■■■□□ 2.12
HLA-DQB2-230ENST00000427449 CHMP7Q8WUX9 453 aaPredicted RBP28.28■■■□□ 2.12
HLA-DQB2-230ENST00000427449 FHAD1B1AJZ9 1412 aa28.26■■■□□ 2.11
HLA-DQB2-230ENST00000427449 ERCC6L2Q5T890 1561 aa28.24■■■□□ 2.11
HLA-DQB2-230ENST00000427449 RUSC2Q8N2Y8 1516 aa28.17■■■□□ 2.1
HLA-DQB2-230ENST00000427449 CUL7Q14999 1698 aa28.13■■■□□ 2.09
HLA-DQB2-230ENST00000427449 CYB5RLQ6IPT4 315 aa28.09■■■□□ 2.09
HLA-DQB2-230ENST00000427449 IGF1RP08069 1367 aa28.02■■■□□ 2.08
HLA-DQB2-230ENST00000427449 KIF27Q86VH2 1401 aa28.01■■■□□ 2.08
HLA-DQB2-230ENST00000427449 KIAA0586Q9BVV6 1533 aa27.83■■■□□ 2.05
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms