RNA–Protein interactions for RNA: ENST00000426962.1

LINC01238-202, Transcript of long intergenic non-protein coding RNA 1238, humanhuman

TSL 2

Gene LINC01238, Length 430 nt, Biotype lincRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01238-202ENST00000426962 NISCHQ9Y2I1 1504 aa26.37■■□□□ 1.81
LINC01238-202ENST00000426962 CCDC180Q9P1Z9 1646 aa23.45■■□□□ 1.34
LINC01238-202ENST00000426962 ABCC9O60706 1549 aa23.23■■□□□ 1.31
LINC01238-202ENST00000426962 DCAF8L2P0C7V8 631 aa22.25■■□□□ 1.15
LINC01238-202ENST00000426962 RB1CC1Q8TDY2 1594 aa22.24■■□□□ 1.15
LINC01238-202ENST00000426962 NACADO15069 1562 aa22.17■■□□□ 1.14
LINC01238-202ENST00000426962 MYO15BQ96JP2 1530 aa21.98■■□□□ 1.11
LINC01238-202ENST00000426962 ZCCHC6Q5VYS8 1495 aaKnown RBP21.89■■□□□ 1.09
LINC01238-202ENST00000426962 DCAF1Q9Y4B6 1507 aa21.8■■□□□ 1.08
LINC01238-202ENST00000426962 PABPN1Q86U42 306 aaKnown RBP eCLIP21.76■■□□□ 1.07
LINC01238-202ENST00000426962 UNC13AQ9UPW8 1703 aa21.65■■□□□ 1.06
LINC01238-202ENST00000426962 DNAJC5BQ9UF47 199 aa21.61■■□□□ 1.05
LINC01238-202ENST00000426962 BICRAQ9NZM4 1560 aa21.56■■□□□ 1.04
LINC01238-202ENST00000426962 SCRIBQ14160 1630 aa21.4■■□□□ 1.02
LINC01238-202ENST00000426962 SHROOM4Q9ULL8 1493 aa21.32■■□□□ 1
LINC01238-202ENST00000426962 EIF4G1Q04637 1599 aaKnown RBP21.02■□□□□ 0.95
LINC01238-202ENST00000426962 CC2D2AQ9P2K1 1620 aa20.98■□□□□ 0.95
LINC01238-202ENST00000426962 CECR2Q9BXF3 1484 aa20.92■□□□□ 0.94
LINC01238-202ENST00000426962 NCAPD3P42695 1498 aa20.5■□□□□ 0.87
LINC01238-202ENST00000426962 SMARCA4P51532 1647 aa20.46■□□□□ 0.87
LINC01238-202ENST00000426962 ATAD2BQ9ULI0 1458 aa20.46■□□□□ 0.87
LINC01238-202ENST00000426962 BAZ1AQ9NRL2 1556 aaPredicted RBP20.43■□□□□ 0.86
LINC01238-202ENST00000426962 SMARCA2P51531 1590 aa20.4■□□□□ 0.86
LINC01238-202ENST00000426962 HMGXB3Q12766 1538 aa20.32■□□□□ 0.84
LINC01238-202ENST00000426962 MROH2BQ7Z745 1585 aa20.31■□□□□ 0.84
LINC01238-202ENST00000426962 PEG3Q9GZU2 1588 aa20.28■□□□□ 0.84
LINC01238-202ENST00000426962 BAZ1BQ9UIG0 1483 aaKnown RBP20.27■□□□□ 0.84
LINC01238-202ENST00000426962 ERCC6Q03468 1493 aa20.05■□□□□ 0.8
LINC01238-202ENST00000426962 WIZO95785 1651 aa20.05■□□□□ 0.8
LINC01238-202ENST00000426962 NESP48681 1621 aa20.04■□□□□ 0.8
LINC01238-202ENST00000426962 RSF1Q96T23 1441 aaPredicted RBP20.03■□□□□ 0.8
LINC01238-202ENST00000426962 LAMC3Q9Y6N6 1575 aa19.95■□□□□ 0.78
LINC01238-202ENST00000426962 CADPSQ9ULU8 1353 aa19.92■□□□□ 0.78
LINC01238-202ENST00000426962 CUX2O14529 1486 aa19.92■□□□□ 0.78
LINC01238-202ENST00000426962 PDS5BQ9NTI5 1447 aa19.88■□□□□ 0.77
LINC01238-202ENST00000426962 TOP2AP11388 1531 aaKnown RBP19.83■□□□□ 0.77
LINC01238-202ENST00000426962 KIF21AQ7Z4S6 1674 aa19.72■□□□□ 0.75
LINC01238-202ENST00000426962 THOC2Q8NI27 1593 aaKnown RBP19.72■□□□□ 0.75
LINC01238-202ENST00000426962 CFTRP13569 1480 aa19.72■□□□□ 0.75
LINC01238-202ENST00000426962 DNAJC5Q9H3Z4 198 aa19.65■□□□□ 0.74
LINC01238-202ENST00000426962 CCDC88BA6NC98 1476 aa19.65■□□□□ 0.74
LINC01238-202ENST00000426962 FANCD2Q9BXW9 1451 aa19.64■□□□□ 0.73
LINC01238-202ENST00000426962 MRC2Q9UBG0 1479 aa19.64■□□□□ 0.73
LINC01238-202ENST00000426962 CEP164Q9UPV0 1460 aa19.62■□□□□ 0.73
LINC01238-202ENST00000426962 WDR62O43379 1518 aa19.56■□□□□ 0.72
LINC01238-202ENST00000426962 URB2Q14146 1524 aaKnown RBP19.44■□□□□ 0.7
LINC01238-202ENST00000426962 SUPT5HO00267 1087 aaKnown RBP19.43■□□□□ 0.7
LINC01238-202ENST00000426962 PRDM2Q13029 1718 aa19.42■□□□□ 0.7
LINC01238-202ENST00000426962 ABCC8Q09428 1581 aa19.32■□□□□ 0.68
LINC01238-202ENST00000426962 TOPBP1Q92547 1522 aa19.29■□□□□ 0.68
LINC01238-202ENST00000426962 IFT140Q96RY7 1462 aa19.24■□□□□ 0.67
LINC01238-202ENST00000426962 DNMBPQ6XZF7 1577 aa19.23■□□□□ 0.67
LINC01238-202ENST00000426962 OSCARQ8IYS5 282 aa19.16■□□□□ 0.66
LINC01238-202ENST00000426962 ZNF608Q9ULD9 1512 aaPredicted RBP19.15■□□□□ 0.66
LINC01238-202ENST00000426962 POLA1P09884 1462 aaPredicted RBP19.11■□□□□ 0.65
LINC01238-202ENST00000426962 SOGA1O94964 1423 aa19.09■□□□□ 0.65
LINC01238-202ENST00000426962 TARBP1Q13395 1621 aaKnown RBP19.07■□□□□ 0.64
LINC01238-202ENST00000426962 AQRO60306 1485 aaKnown RBP eCLIP19.06■□□□□ 0.64
LINC01238-202ENST00000426962 CUX1P39880 1505 aa19.05■□□□□ 0.64
LINC01238-202ENST00000426962 RAD54L2Q9Y4B4 1467 aa19.05■□□□□ 0.64
LINC01238-202ENST00000426962 FGD5Q6ZNL6 1462 aa19.03■□□□□ 0.64
LINC01238-202ENST00000426962 TDRD9Q8NDG6 1382 aaKnown RBP19.01■□□□□ 0.63
LINC01238-202ENST00000426962 EIF4G3O43432 1585 aaKnown RBP19.01■□□□□ 0.63
LINC01238-202ENST00000426962 FBLN2P98095 1184 aa18.93■□□□□ 0.62
LINC01238-202ENST00000426962 WDR97A6NE52 1622 aa18.9■□□□□ 0.62
LINC01238-202ENST00000426962 TRIM41Q8WV44 630 aa18.89■□□□□ 0.61
LINC01238-202ENST00000426962 WRNQ14191 1432 aaPredicted RBP eCLIP18.89■□□□□ 0.61
LINC01238-202ENST00000426962 GRIN2BQ13224 1484 aa18.85■□□□□ 0.61
LINC01238-202ENST00000426962 CHMP7Q8WUX9 453 aaPredicted RBP18.85■□□□□ 0.61
LINC01238-202ENST00000426962 ABCA10Q8WWZ4 1543 aa18.84■□□□□ 0.61
LINC01238-202ENST00000426962 GAPVD1Q14C86 1478 aa18.84■□□□□ 0.61
LINC01238-202ENST00000426962 SNAPC4Q5SXM2 1469 aa18.84■□□□□ 0.61
LINC01238-202ENST00000426962 TOP2BQ02880 1626 aa18.82■□□□□ 0.6
LINC01238-202ENST00000426962 MAGI1Q96QZ7 1491 aaPredicted RBP18.82■□□□□ 0.6
LINC01238-202ENST00000426962 CHD1O14646 1710 aa18.8■□□□□ 0.6
LINC01238-202ENST00000426962 BIVM-ERCC5R4GMW8 1640 aa18.79■□□□□ 0.6
LINC01238-202ENST00000426962 SYNJ1O43426 1573 aa18.79■□□□□ 0.6
LINC01238-202ENST00000426962 SYNJ2O15056 1496 aa18.76■□□□□ 0.59
LINC01238-202ENST00000426962 RIMBP3CA6NJZ7 1639 aa18.73■□□□□ 0.59
LINC01238-202ENST00000426962 RIMBP3BA6NNM3 1639 aa18.73■□□□□ 0.59
LINC01238-202ENST00000426962 ABCA5Q8WWZ7 1642 aa18.73■□□□□ 0.59
LINC01238-202ENST00000426962 RIMBP3Q9UFD9 1639 aa18.73■□□□□ 0.59
LINC01238-202ENST00000426962 ARHGEF11O15085 1522 aa18.73■□□□□ 0.59
LINC01238-202ENST00000426962 PBRM1Q86U86 1689 aa18.7■□□□□ 0.58
LINC01238-202ENST00000426962 CYB5RLQ6IPT4 315 aa18.68■□□□□ 0.58
LINC01238-202ENST00000426962 CLASP1Q7Z460 1538 aa18.64■□□□□ 0.57
LINC01238-202ENST00000426962 FHAD1B1AJZ9 1412 aa18.62■□□□□ 0.57
LINC01238-202ENST00000426962 ERICH3Q5RHP9 1530 aa18.61■□□□□ 0.57
LINC01238-202ENST00000426962 GRIN2AQ12879 1464 aa18.59■□□□□ 0.57
LINC01238-202ENST00000426962 ADAMTS12P58397 1594 aa18.56■□□□□ 0.56
LINC01238-202ENST00000426962 ARAP1Q96P48 1450 aa18.56■□□□□ 0.56
LINC01238-202ENST00000426962 NUP160Q12769 1436 aa18.54■□□□□ 0.56
LINC01238-202ENST00000426962 KIF27Q86VH2 1401 aa18.53■□□□□ 0.56
LINC01238-202ENST00000426962 IGF1RP08069 1367 aa18.52■□□□□ 0.55
LINC01238-202ENST00000426962 CEP170Q5SW79 1584 aa18.48■□□□□ 0.55
LINC01238-202ENST00000426962 JPH4Q96JJ6 628 aa18.44■□□□□ 0.54
LINC01238-202ENST00000426962 CARMIL1Q5VZK9 1371 aa18.4■□□□□ 0.54
LINC01238-202ENST00000426962 TRHP20396 242 aaPredicted RBP18.37■□□□□ 0.53
LINC01238-202ENST00000426962 SHROOM2Q13796 1616 aa18.36■□□□□ 0.53
LINC01238-202ENST00000426962 CUL7Q14999 1698 aa18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms