RNA–Protein interactions for RNA: ENST00000426493.5

PDLIM2-209, Transcript of PDZ and LIM domain 2, humanhuman

TSL 3

Gene PDLIM2, Length 578 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-209ENST00000426493 NISCHQ9Y2I1 1504 aa44.89■■■■■ 4.78
PDLIM2-209ENST00000426493 CCDC180Q9P1Z9 1646 aa40.34■■■■■ 4.05
PDLIM2-209ENST00000426493 ABCC9O60706 1549 aa40.31■■■■■ 4.04
PDLIM2-209ENST00000426493 RB1CC1Q8TDY2 1594 aa38.33■■■■□ 3.73
PDLIM2-209ENST00000426493 NACADO15069 1562 aa38.07■■■■□ 3.69
PDLIM2-209ENST00000426493 DNAJC5BQ9UF47 199 aa37.92■■■■□ 3.66
PDLIM2-209ENST00000426493 DCAF8L2P0C7V8 631 aa37.75■■■■□ 3.63
PDLIM2-209ENST00000426493 UNC13AQ9UPW8 1703 aa37.74■■■■□ 3.63
PDLIM2-209ENST00000426493 MYO15BQ96JP2 1530 aa37.53■■■■□ 3.6
PDLIM2-209ENST00000426493 PABPN1Q86U42 306 aaKnown RBP eCLIP37.49■■■■□ 3.59
PDLIM2-209ENST00000426493 BICRAQ9NZM4 1560 aa37.37■■■■□ 3.57
PDLIM2-209ENST00000426493 ZCCHC6Q5VYS8 1495 aaKnown RBP37.2■■■■□ 3.55
PDLIM2-209ENST00000426493 DCAF1Q9Y4B6 1507 aa37.06■■■■□ 3.52
PDLIM2-209ENST00000426493 SCRIBQ14160 1630 aa36.74■■■■□ 3.47
PDLIM2-209ENST00000426493 SHROOM4Q9ULL8 1493 aa36.66■■■■□ 3.46
PDLIM2-209ENST00000426493 CC2D2AQ9P2K1 1620 aa36.47■■■■□ 3.43
PDLIM2-209ENST00000426493 EIF4G1Q04637 1599 aaKnown RBP36.36■■■■□ 3.41
PDLIM2-209ENST00000426493 CECR2Q9BXF3 1484 aa36.28■■■■□ 3.4
PDLIM2-209ENST00000426493 NCAPD3P42695 1498 aa35.15■■■■□ 3.22
PDLIM2-209ENST00000426493 SMARCA4P51532 1647 aa35.06■■■■□ 3.2
PDLIM2-209ENST00000426493 ATAD2BQ9ULI0 1458 aa35.05■■■■□ 3.2
PDLIM2-209ENST00000426493 SMARCA2P51531 1590 aa34.91■■■■□ 3.18
PDLIM2-209ENST00000426493 HMGXB3Q12766 1538 aa34.9■■■■□ 3.18
PDLIM2-209ENST00000426493 BAZ1AQ9NRL2 1556 aaPredicted RBP34.8■■■■□ 3.16
PDLIM2-209ENST00000426493 DNAJC5Q9H3Z4 198 aa34.73■■■■□ 3.15
PDLIM2-209ENST00000426493 PEG3Q9GZU2 1588 aa34.72■■■■□ 3.15
PDLIM2-209ENST00000426493 CUX2O14529 1486 aa34.7■■■■□ 3.15
PDLIM2-209ENST00000426493 ERCC6Q03468 1493 aa34.7■■■■□ 3.15
PDLIM2-209ENST00000426493 NESP48681 1621 aa34.68■■■■□ 3.14
PDLIM2-209ENST00000426493 BAZ1BQ9UIG0 1483 aaKnown RBP34.66■■■■□ 3.14
PDLIM2-209ENST00000426493 MROH2BQ7Z745 1585 aa34.63■■■■□ 3.13
PDLIM2-209ENST00000426493 THOC2Q8NI27 1593 aaKnown RBP34.36■■■■□ 3.09
PDLIM2-209ENST00000426493 LAMC3Q9Y6N6 1575 aa34.36■■■■□ 3.09
PDLIM2-209ENST00000426493 KIF21AQ7Z4S6 1674 aa34.31■■■■□ 3.08
PDLIM2-209ENST00000426493 WIZO95785 1651 aa34.26■■■■□ 3.08
PDLIM2-209ENST00000426493 PDS5BQ9NTI5 1447 aa34.07■■■■□ 3.04
PDLIM2-209ENST00000426493 CADPSQ9ULU8 1353 aa34.04■■■■□ 3.04
PDLIM2-209ENST00000426493 RSF1Q96T23 1441 aaPredicted RBP33.85■■■■□ 3.01
PDLIM2-209ENST00000426493 MRC2Q9UBG0 1479 aa33.84■■■■□ 3.01
PDLIM2-209ENST00000426493 WDR62O43379 1518 aa33.82■■■■□ 3
PDLIM2-209ENST00000426493 TOP2AP11388 1531 aaKnown RBP33.74■■■□□ 2.99
PDLIM2-209ENST00000426493 CFTRP13569 1480 aa33.69■■■□□ 2.98
PDLIM2-209ENST00000426493 CEP164Q9UPV0 1460 aa33.69■■■□□ 2.98
PDLIM2-209ENST00000426493 FANCD2Q9BXW9 1451 aa33.68■■■□□ 2.98
PDLIM2-209ENST00000426493 PRDM2Q13029 1718 aa33.52■■■□□ 2.96
PDLIM2-209ENST00000426493 URB2Q14146 1524 aaKnown RBP33.47■■■□□ 2.95
PDLIM2-209ENST00000426493 CCDC88BA6NC98 1476 aa33.37■■■□□ 2.93
PDLIM2-209ENST00000426493 TRIM41Q8WV44 630 aa33.14■■■□□ 2.9
PDLIM2-209ENST00000426493 TOPBP1Q92547 1522 aa33.07■■■□□ 2.89
PDLIM2-209ENST00000426493 ZNF608Q9ULD9 1512 aaPredicted RBP33.06■■■□□ 2.88
PDLIM2-209ENST00000426493 OSCARQ8IYS5 282 aa33.05■■■□□ 2.88
PDLIM2-209ENST00000426493 IFT140Q96RY7 1462 aa33.01■■■□□ 2.88
PDLIM2-209ENST00000426493 DNMBPQ6XZF7 1577 aa32.95■■■□□ 2.86
PDLIM2-209ENST00000426493 ABCC8Q09428 1581 aa32.9■■■□□ 2.86
PDLIM2-209ENST00000426493 EIF4G3O43432 1585 aaKnown RBP32.88■■■□□ 2.85
PDLIM2-209ENST00000426493 TARBP1Q13395 1621 aaKnown RBP32.86■■■□□ 2.85
PDLIM2-209ENST00000426493 RIMBP3CA6NJZ7 1639 aa32.8■■■□□ 2.84
PDLIM2-209ENST00000426493 RIMBP3BA6NNM3 1639 aa32.8■■■□□ 2.84
PDLIM2-209ENST00000426493 RIMBP3Q9UFD9 1639 aa32.8■■■□□ 2.84
PDLIM2-209ENST00000426493 CHD1O14646 1710 aa32.73■■■□□ 2.83
PDLIM2-209ENST00000426493 POLA1P09884 1462 aaPredicted RBP32.73■■■□□ 2.83
PDLIM2-209ENST00000426493 AQRO60306 1485 aaKnown RBP eCLIP32.72■■■□□ 2.83
PDLIM2-209ENST00000426493 ARHGEF11O15085 1522 aa32.63■■■□□ 2.81
PDLIM2-209ENST00000426493 RAD54L2Q9Y4B4 1467 aa32.63■■■□□ 2.81
PDLIM2-209ENST00000426493 CUX1P39880 1505 aa32.53■■■□□ 2.8
PDLIM2-209ENST00000426493 SOGA1O94964 1423 aa32.52■■■□□ 2.8
PDLIM2-209ENST00000426493 FGD5Q6ZNL6 1462 aa32.51■■■□□ 2.79
PDLIM2-209ENST00000426493 TDRD9Q8NDG6 1382 aaKnown RBP32.48■■■□□ 2.79
PDLIM2-209ENST00000426493 WDR97A6NE52 1622 aa32.41■■■□□ 2.78
PDLIM2-209ENST00000426493 FBLN2P98095 1184 aa32.38■■■□□ 2.77
PDLIM2-209ENST00000426493 SNAPC4Q5SXM2 1469 aa32.36■■■□□ 2.77
PDLIM2-209ENST00000426493 ARAP1Q96P48 1450 aa32.33■■■□□ 2.77
PDLIM2-209ENST00000426493 CYB5RLQ6IPT4 315 aa32.31■■■□□ 2.76
PDLIM2-209ENST00000426493 PBRM1Q86U86 1689 aa32.27■■■□□ 2.76
PDLIM2-209ENST00000426493 CLASP1Q7Z460 1538 aa32.27■■■□□ 2.76
PDLIM2-209ENST00000426493 MAGI1Q96QZ7 1491 aaPredicted RBP32.25■■■□□ 2.75
PDLIM2-209ENST00000426493 GRIN2BQ13224 1484 aa32.24■■■□□ 2.75
PDLIM2-209ENST00000426493 SUPT5HO00267 1087 aaKnown RBP32.23■■■□□ 2.75
PDLIM2-209ENST00000426493 SYNJ1O43426 1573 aa32.17■■■□□ 2.74
PDLIM2-209ENST00000426493 ABCA5Q8WWZ7 1642 aa32.17■■■□□ 2.74
PDLIM2-209ENST00000426493 SYNJ2O15056 1496 aa32.15■■■□□ 2.74
PDLIM2-209ENST00000426493 GAPVD1Q14C86 1478 aa32.14■■■□□ 2.74
PDLIM2-209ENST00000426493 ABCA10Q8WWZ4 1543 aa32.14■■■□□ 2.74
PDLIM2-209ENST00000426493 CHMP7Q8WUX9 453 aaPredicted RBP32.13■■■□□ 2.73
PDLIM2-209ENST00000426493 BIVM-ERCC5R4GMW8 1640 aa32.04■■■□□ 2.72
PDLIM2-209ENST00000426493 TOP2BQ02880 1626 aa31.98■■■□□ 2.71
PDLIM2-209ENST00000426493 WRNQ14191 1432 aaPredicted RBP eCLIP31.92■■■□□ 2.7
PDLIM2-209ENST00000426493 ADAMTS12P58397 1594 aa31.9■■■□□ 2.7
PDLIM2-209ENST00000426493 TRHP20396 242 aaPredicted RBP31.89■■■□□ 2.7
PDLIM2-209ENST00000426493 GRIN2AQ12879 1464 aa31.86■■■□□ 2.69
PDLIM2-209ENST00000426493 ERCC6L2Q5T890 1561 aa31.83■■■□□ 2.69
PDLIM2-209ENST00000426493 CEP170Q5SW79 1584 aa31.82■■■□□ 2.68
PDLIM2-209ENST00000426493 NUP160Q12769 1436 aa31.77■■■□□ 2.68
PDLIM2-209ENST00000426493 ERICH3Q5RHP9 1530 aa31.72■■■□□ 2.67
PDLIM2-209ENST00000426493 SHROOM2Q13796 1616 aa31.71■■■□□ 2.67
PDLIM2-209ENST00000426493 FHAD1B1AJZ9 1412 aa31.71■■■□□ 2.67
PDLIM2-209ENST00000426493 RUSC2Q8N2Y8 1516 aa31.45■■■□□ 2.63
PDLIM2-209ENST00000426493 PRG4Q92954 1404 aaPredicted RBP31.42■■■□□ 2.62
PDLIM2-209ENST00000426493 KIF13AQ9H1H9 1805 aa31.39■■■□□ 2.62
PDLIM2-209ENST00000426493 JPH4Q96JJ6 628 aa31.38■■■□□ 2.61
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms