RNA–Protein interactions for RNA: ENST00000425703.5

MSH5-207, Transcript of mutS homolog 5, humanhuman

TSL 5

Gene MSH5, Length 694 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-207ENST00000425703 NISCHQ9Y2I1 1504 aa45.26■■■■■ 4.84
MSH5-207ENST00000425703 CCDC180Q9P1Z9 1646 aa40.32■■■■■ 4.05
MSH5-207ENST00000425703 ABCC9O60706 1549 aa39.63■■■■□ 3.93
MSH5-207ENST00000425703 RB1CC1Q8TDY2 1594 aa38.07■■■■□ 3.69
MSH5-207ENST00000425703 NACADO15069 1562 aa38.01■■■■□ 3.67
MSH5-207ENST00000425703 DCAF8L2P0C7V8 631 aa37.83■■■■□ 3.65
MSH5-207ENST00000425703 MYO15BQ96JP2 1530 aa37.78■■■■□ 3.64
MSH5-207ENST00000425703 ZCCHC6Q5VYS8 1495 aaKnown RBP37.66■■■■□ 3.62
MSH5-207ENST00000425703 DCAF1Q9Y4B6 1507 aa37.51■■■■□ 3.59
MSH5-207ENST00000425703 UNC13AQ9UPW8 1703 aa37.07■■■■□ 3.52
MSH5-207ENST00000425703 PABPN1Q86U42 306 aaKnown RBP eCLIP37■■■■□ 3.51
MSH5-207ENST00000425703 BICRAQ9NZM4 1560 aa36.9■■■■□ 3.5
MSH5-207ENST00000425703 SCRIBQ14160 1630 aa36.69■■■■□ 3.46
MSH5-207ENST00000425703 SHROOM4Q9ULL8 1493 aa36.64■■■■□ 3.46
MSH5-207ENST00000425703 DNAJC5BQ9UF47 199 aa36.6■■■■□ 3.45
MSH5-207ENST00000425703 EIF4G1Q04637 1599 aaKnown RBP35.96■■■■□ 3.35
MSH5-207ENST00000425703 CC2D2AQ9P2K1 1620 aa35.84■■■■□ 3.33
MSH5-207ENST00000425703 CECR2Q9BXF3 1484 aa35.68■■■■□ 3.3
MSH5-207ENST00000425703 SMARCA4P51532 1647 aa35.13■■■■□ 3.21
MSH5-207ENST00000425703 NCAPD3P42695 1498 aa35.1■■■■□ 3.21
MSH5-207ENST00000425703 BAZ1AQ9NRL2 1556 aaPredicted RBP35.1■■■■□ 3.21
MSH5-207ENST00000425703 ATAD2BQ9ULI0 1458 aa35.04■■■■□ 3.2
MSH5-207ENST00000425703 SMARCA2P51531 1590 aa35■■■■□ 3.19
MSH5-207ENST00000425703 HMGXB3Q12766 1538 aa34.88■■■■□ 3.17
MSH5-207ENST00000425703 PEG3Q9GZU2 1588 aa34.86■■■■□ 3.17
MSH5-207ENST00000425703 MROH2BQ7Z745 1585 aa34.83■■■■□ 3.17
MSH5-207ENST00000425703 BAZ1BQ9UIG0 1483 aaKnown RBP34.72■■■■□ 3.15
MSH5-207ENST00000425703 RSF1Q96T23 1441 aaPredicted RBP34.4■■■■□ 3.1
MSH5-207ENST00000425703 WIZO95785 1651 aa34.39■■■■□ 3.1
MSH5-207ENST00000425703 NESP48681 1621 aa34.22■■■■□ 3.07
MSH5-207ENST00000425703 ERCC6Q03468 1493 aa34.2■■■■□ 3.07
MSH5-207ENST00000425703 LAMC3Q9Y6N6 1575 aa34.16■■■■□ 3.06
MSH5-207ENST00000425703 TOP2AP11388 1531 aaKnown RBP34.09■■■■□ 3.05
MSH5-207ENST00000425703 CADPSQ9ULU8 1353 aa34.06■■■■□ 3.04
MSH5-207ENST00000425703 CUX2O14529 1486 aa33.99■■■■□ 3.03
MSH5-207ENST00000425703 PDS5BQ9NTI5 1447 aa33.98■■■■□ 3.03
MSH5-207ENST00000425703 CFTRP13569 1480 aa33.81■■■■□ 3
MSH5-207ENST00000425703 THOC2Q8NI27 1593 aaKnown RBP33.76■■■□□ 2.99
MSH5-207ENST00000425703 KIF21AQ7Z4S6 1674 aa33.75■■■□□ 2.99
MSH5-207ENST00000425703 CCDC88BA6NC98 1476 aa33.69■■■□□ 2.98
MSH5-207ENST00000425703 FANCD2Q9BXW9 1451 aa33.63■■■□□ 2.97
MSH5-207ENST00000425703 MRC2Q9UBG0 1479 aa33.61■■■□□ 2.97
MSH5-207ENST00000425703 CEP164Q9UPV0 1460 aa33.6■■■□□ 2.97
MSH5-207ENST00000425703 WDR62O43379 1518 aa33.51■■■□□ 2.95
MSH5-207ENST00000425703 PRDM2Q13029 1718 aa33.39■■■□□ 2.94
MSH5-207ENST00000425703 URB2Q14146 1524 aaKnown RBP33.28■■■□□ 2.92
MSH5-207ENST00000425703 SUPT5HO00267 1087 aaKnown RBP33.28■■■□□ 2.92
MSH5-207ENST00000425703 DNAJC5Q9H3Z4 198 aa33.22■■■□□ 2.91
MSH5-207ENST00000425703 ABCC8Q09428 1581 aa33.1■■■□□ 2.89
MSH5-207ENST00000425703 TOPBP1Q92547 1522 aa33.05■■■□□ 2.88
MSH5-207ENST00000425703 DNMBPQ6XZF7 1577 aa33■■■□□ 2.87
MSH5-207ENST00000425703 IFT140Q96RY7 1462 aa32.94■■■□□ 2.86
MSH5-207ENST00000425703 POLA1P09884 1462 aaPredicted RBP32.76■■■□□ 2.84
MSH5-207ENST00000425703 ZNF608Q9ULD9 1512 aaPredicted RBP32.75■■■□□ 2.83
MSH5-207ENST00000425703 CUX1P39880 1505 aa32.7■■■□□ 2.83
MSH5-207ENST00000425703 TARBP1Q13395 1621 aaKnown RBP32.69■■■□□ 2.82
MSH5-207ENST00000425703 FGD5Q6ZNL6 1462 aa32.63■■■□□ 2.81
MSH5-207ENST00000425703 SOGA1O94964 1423 aa32.63■■■□□ 2.81
MSH5-207ENST00000425703 EIF4G3O43432 1585 aaKnown RBP32.59■■■□□ 2.81
MSH5-207ENST00000425703 RAD54L2Q9Y4B4 1467 aa32.58■■■□□ 2.81
MSH5-207ENST00000425703 AQRO60306 1485 aaKnown RBP eCLIP32.54■■■□□ 2.83e-8■■■■■ 37.5
MSH5-207ENST00000425703 OSCARQ8IYS5 282 aa32.54■■■□□ 2.8
MSH5-207ENST00000425703 WDR97A6NE52 1622 aa32.49■■■□□ 2.79
MSH5-207ENST00000425703 TDRD9Q8NDG6 1382 aaKnown RBP32.45■■■□□ 2.79
MSH5-207ENST00000425703 WRNQ14191 1432 aaPredicted RBP eCLIP32.44■■■□□ 2.78
MSH5-207ENST00000425703 TOP2BQ02880 1626 aa32.37■■■□□ 2.77
MSH5-207ENST00000425703 ABCA10Q8WWZ4 1543 aa32.35■■■□□ 2.77
MSH5-207ENST00000425703 BIVM-ERCC5R4GMW8 1640 aa32.34■■■□□ 2.77
MSH5-207ENST00000425703 SYNJ1O43426 1573 aa32.3■■■□□ 2.76
MSH5-207ENST00000425703 GRIN2BQ13224 1484 aa32.29■■■□□ 2.76
MSH5-207ENST00000425703 GAPVD1Q14C86 1478 aa32.24■■■□□ 2.75
MSH5-207ENST00000425703 MAGI1Q96QZ7 1491 aaPredicted RBP32.24■■■□□ 2.75
MSH5-207ENST00000425703 SNAPC4Q5SXM2 1469 aa32.23■■■□□ 2.75
MSH5-207ENST00000425703 ABCA5Q8WWZ7 1642 aa32.19■■■□□ 2.74
MSH5-207ENST00000425703 FBLN2P98095 1184 aa32.18■■■□□ 2.74
MSH5-207ENST00000425703 CHD1O14646 1710 aa32.16■■■□□ 2.74
MSH5-207ENST00000425703 CHMP7Q8WUX9 453 aaPredicted RBP32.12■■■□□ 2.73
MSH5-207ENST00000425703 SYNJ2O15056 1496 aa32.11■■■□□ 2.73
MSH5-207ENST00000425703 PBRM1Q86U86 1689 aa32.09■■■□□ 2.73
MSH5-207ENST00000425703 ARHGEF11O15085 1522 aa31.96■■■□□ 2.71
MSH5-207ENST00000425703 ERICH3Q5RHP9 1530 aa31.96■■■□□ 2.71
MSH5-207ENST00000425703 RIMBP3CA6NJZ7 1639 aa31.94■■■□□ 2.7
MSH5-207ENST00000425703 RIMBP3BA6NNM3 1639 aa31.94■■■□□ 2.7
MSH5-207ENST00000425703 RIMBP3Q9UFD9 1639 aa31.94■■■□□ 2.7
MSH5-207ENST00000425703 TRIM41Q8WV44 630 aa31.92■■■□□ 2.7
MSH5-207ENST00000425703 CLASP1Q7Z460 1538 aa31.91■■■□□ 2.7
MSH5-207ENST00000425703 FHAD1B1AJZ9 1412 aa31.9■■■□□ 2.7
MSH5-207ENST00000425703 ADAMTS12P58397 1594 aa31.9■■■□□ 2.7
MSH5-207ENST00000425703 GRIN2AQ12879 1464 aa31.86■■■□□ 2.69
MSH5-207ENST00000425703 KIF27Q86VH2 1401 aa31.8■■■□□ 2.68
MSH5-207ENST00000425703 NUP160Q12769 1436 aa31.76■■■□□ 2.68
MSH5-207ENST00000425703 IGF1RP08069 1367 aa31.7■■■□□ 2.67
MSH5-207ENST00000425703 ARAP1Q96P48 1450 aa31.68■■■□□ 2.66
MSH5-207ENST00000425703 CYB5RLQ6IPT4 315 aa31.68■■■□□ 2.66
MSH5-207ENST00000425703 CEP170Q5SW79 1584 aa31.67■■■□□ 2.66
MSH5-207ENST00000425703 CUL7Q14999 1698 aa31.58■■■□□ 2.65
MSH5-207ENST00000425703 SHROOM2Q13796 1616 aa31.5■■■□□ 2.63
MSH5-207ENST00000425703 CARMIL1Q5VZK9 1371 aa31.5■■■□□ 2.63
MSH5-207ENST00000425703 JPH4Q96JJ6 628 aa31.43■■■□□ 2.62
MSH5-207ENST00000425703 RUSC2Q8N2Y8 1516 aa31.43■■■□□ 2.62
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms