RNA–Protein interactions for RNA: ENST00000425319.1

HLA-DQB3-203, Transcript of major histocompatibility complex, class II, DQ beta 3, humanhuman

BASIC

Gene HLA-DQB3, Length 356 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB3-203ENST00000425319 NISCHQ9Y2I1 1504 aa30.35■■■□□ 2.45
HLA-DQB3-203ENST00000425319 ABCC9O60706 1549 aa27.52■■■□□ 2
HLA-DQB3-203ENST00000425319 CCDC180Q9P1Z9 1646 aa27.21■■□□□ 1.95
HLA-DQB3-203ENST00000425319 RB1CC1Q8TDY2 1594 aa26.14■■□□□ 1.78
HLA-DQB3-203ENST00000425319 DCAF8L2P0C7V8 631 aa26.09■■□□□ 1.77
HLA-DQB3-203ENST00000425319 DNAJC5BQ9UF47 199 aa25.94■■□□□ 1.74
HLA-DQB3-203ENST00000425319 NACADO15069 1562 aa25.91■■□□□ 1.74
HLA-DQB3-203ENST00000425319 PABPN1Q86U42 306 aaKnown RBP eCLIP25.71■■□□□ 1.71
HLA-DQB3-203ENST00000425319 MYO15BQ96JP2 1530 aa25.48■■□□□ 1.67
HLA-DQB3-203ENST00000425319 UNC13AQ9UPW8 1703 aa25.18■■□□□ 1.62
HLA-DQB3-203ENST00000425319 BICRAQ9NZM4 1560 aa25.16■■□□□ 1.62
HLA-DQB3-203ENST00000425319 DCAF1Q9Y4B6 1507 aa25.07■■□□□ 1.6
HLA-DQB3-203ENST00000425319 ZCCHC6Q5VYS8 1495 aaKnown RBP25.05■■□□□ 1.6
HLA-DQB3-203ENST00000425319 SHROOM4Q9ULL8 1493 aa25.03■■□□□ 1.6
HLA-DQB3-203ENST00000425319 CECR2Q9BXF3 1484 aa24.85■■□□□ 1.57
HLA-DQB3-203ENST00000425319 SCRIBQ14160 1630 aa24.8■■□□□ 1.56
HLA-DQB3-203ENST00000425319 CC2D2AQ9P2K1 1620 aa24.76■■□□□ 1.55
HLA-DQB3-203ENST00000425319 EIF4G1Q04637 1599 aaKnown RBP24.67■■□□□ 1.54
HLA-DQB3-203ENST00000425319 DNAJC5Q9H3Z4 198 aa24.13■■□□□ 1.45
HLA-DQB3-203ENST00000425319 NCAPD3P42695 1498 aa23.95■■□□□ 1.42
HLA-DQB3-203ENST00000425319 ERCC6Q03468 1493 aa23.91■■□□□ 1.42
HLA-DQB3-203ENST00000425319 CUX2O14529 1486 aa23.85■■□□□ 1.41
HLA-DQB3-203ENST00000425319 ATAD2BQ9ULI0 1458 aa23.81■■□□□ 1.4
HLA-DQB3-203ENST00000425319 SMARCA2P51531 1590 aa23.78■■□□□ 1.4
HLA-DQB3-203ENST00000425319 HMGXB3Q12766 1538 aa23.66■■□□□ 1.38
HLA-DQB3-203ENST00000425319 SMARCA4P51532 1647 aa23.64■■□□□ 1.38
HLA-DQB3-203ENST00000425319 BAZ1BQ9UIG0 1483 aaKnown RBP23.62■■□□□ 1.37
HLA-DQB3-203ENST00000425319 BAZ1AQ9NRL2 1556 aaPredicted RBP23.62■■□□□ 1.37
HLA-DQB3-203ENST00000425319 NESP48681 1621 aa23.5■■□□□ 1.35
HLA-DQB3-203ENST00000425319 PDS5BQ9NTI5 1447 aa23.44■■□□□ 1.34
HLA-DQB3-203ENST00000425319 PEG3Q9GZU2 1588 aa23.4■■□□□ 1.34
HLA-DQB3-203ENST00000425319 LAMC3Q9Y6N6 1575 aa23.4■■□□□ 1.34
HLA-DQB3-203ENST00000425319 MROH2BQ7Z745 1585 aa23.33■■□□□ 1.33
HLA-DQB3-203ENST00000425319 CADPSQ9ULU8 1353 aa23.28■■□□□ 1.32
HLA-DQB3-203ENST00000425319 THOC2Q8NI27 1593 aaKnown RBP23.19■■□□□ 1.3
HLA-DQB3-203ENST00000425319 MRC2Q9UBG0 1479 aa23.11■■□□□ 1.29
HLA-DQB3-203ENST00000425319 KIF21AQ7Z4S6 1674 aa23.07■■□□□ 1.28
HLA-DQB3-203ENST00000425319 TRIM41Q8WV44 630 aa23.07■■□□□ 1.28
HLA-DQB3-203ENST00000425319 CEP164Q9UPV0 1460 aa23.01■■□□□ 1.27
HLA-DQB3-203ENST00000425319 WIZO95785 1651 aa22.99■■□□□ 1.27
HLA-DQB3-203ENST00000425319 WDR62O43379 1518 aa22.95■■□□□ 1.26
HLA-DQB3-203ENST00000425319 OSCARQ8IYS5 282 aa22.95■■□□□ 1.26
HLA-DQB3-203ENST00000425319 FANCD2Q9BXW9 1451 aa22.95■■□□□ 1.26
HLA-DQB3-203ENST00000425319 CFTRP13569 1480 aa22.88■■□□□ 1.25
HLA-DQB3-203ENST00000425319 RSF1Q96T23 1441 aaPredicted RBP22.87■■□□□ 1.25
HLA-DQB3-203ENST00000425319 TOP2AP11388 1531 aaKnown RBP22.77■■□□□ 1.24
HLA-DQB3-203ENST00000425319 URB2Q14146 1524 aaKnown RBP22.66■■□□□ 1.22
HLA-DQB3-203ENST00000425319 IFT140Q96RY7 1462 aa22.58■■□□□ 1.2
HLA-DQB3-203ENST00000425319 ABCC8Q09428 1581 aa22.57■■□□□ 1.2
HLA-DQB3-203ENST00000425319 CCDC88BA6NC98 1476 aa22.56■■□□□ 1.2
HLA-DQB3-203ENST00000425319 FBLN2P98095 1184 aa22.44■■□□□ 1.18
HLA-DQB3-203ENST00000425319 TOPBP1Q92547 1522 aa22.44■■□□□ 1.18
HLA-DQB3-203ENST00000425319 ZNF608Q9ULD9 1512 aaPredicted RBP22.41■■□□□ 1.18
HLA-DQB3-203ENST00000425319 PRDM2Q13029 1718 aa22.4■■□□□ 1.18
HLA-DQB3-203ENST00000425319 CYB5RLQ6IPT4 315 aa22.38■■□□□ 1.17
HLA-DQB3-203ENST00000425319 DNMBPQ6XZF7 1577 aa22.33■■□□□ 1.16
HLA-DQB3-203ENST00000425319 RIMBP3CA6NJZ7 1639 aa22.3■■□□□ 1.16
HLA-DQB3-203ENST00000425319 RIMBP3BA6NNM3 1639 aa22.3■■□□□ 1.16
HLA-DQB3-203ENST00000425319 RIMBP3Q9UFD9 1639 aa22.3■■□□□ 1.16
HLA-DQB3-203ENST00000425319 AQRO60306 1485 aaKnown RBP eCLIP22.29■■□□□ 1.16
HLA-DQB3-203ENST00000425319 TRHP20396 242 aaPredicted RBP22.29■■□□□ 1.16
HLA-DQB3-203ENST00000425319 ARHGEF11O15085 1522 aa22.28■■□□□ 1.16
HLA-DQB3-203ENST00000425319 SOGA1O94964 1423 aa22.25■■□□□ 1.15
HLA-DQB3-203ENST00000425319 CHMP7Q8WUX9 453 aaPredicted RBP22.24■■□□□ 1.15
HLA-DQB3-203ENST00000425319 EIF4G3O43432 1585 aaKnown RBP22.22■■□□□ 1.15
HLA-DQB3-203ENST00000425319 TDRD9Q8NDG6 1382 aaKnown RBP22.19■■□□□ 1.14
HLA-DQB3-203ENST00000425319 POLA1P09884 1462 aaPredicted RBP22.19■■□□□ 1.14
HLA-DQB3-203ENST00000425319 TARBP1Q13395 1621 aaKnown RBP22.13■■□□□ 1.13
HLA-DQB3-203ENST00000425319 RAD54L2Q9Y4B4 1467 aa22.12■■□□□ 1.13
HLA-DQB3-203ENST00000425319 FGD5Q6ZNL6 1462 aa22.04■■□□□ 1.12
HLA-DQB3-203ENST00000425319 CHD1O14646 1710 aa22.03■■□□□ 1.12
HLA-DQB3-203ENST00000425319 WDR97A6NE52 1622 aa22.03■■□□□ 1.12
HLA-DQB3-203ENST00000425319 GRIN2BQ13224 1484 aa22.03■■□□□ 1.12
HLA-DQB3-203ENST00000425319 SNAPC4Q5SXM2 1469 aa22.03■■□□□ 1.12
HLA-DQB3-203ENST00000425319 ARAP1Q96P48 1450 aa22.02■■□□□ 1.12
HLA-DQB3-203ENST00000425319 MAGI1Q96QZ7 1491 aaPredicted RBP22.02■■□□□ 1.12
HLA-DQB3-203ENST00000425319 SYNJ1O43426 1573 aa21.98■■□□□ 1.11
HLA-DQB3-203ENST00000425319 SUPT5HO00267 1087 aaKnown RBP21.97■■□□□ 1.11
HLA-DQB3-203ENST00000425319 SYNJ2O15056 1496 aa21.94■■□□□ 1.1
HLA-DQB3-203ENST00000425319 CUX1P39880 1505 aa21.91■■□□□ 1.1
HLA-DQB3-203ENST00000425319 GAPVD1Q14C86 1478 aa21.91■■□□□ 1.1
HLA-DQB3-203ENST00000425319 AEBP2Q6ZN18 517 aaPredicted RBP21.86■■□□□ 1.09
HLA-DQB3-203ENST00000425319 CLASP1Q7Z460 1538 aa21.84■■□□□ 1.09
HLA-DQB3-203ENST00000425319 WRNQ14191 1432 aaPredicted RBP eCLIP21.81■■□□□ 1.08
HLA-DQB3-203ENST00000425319 ABCA10Q8WWZ4 1543 aa21.8■■□□□ 1.08
HLA-DQB3-203ENST00000425319 PBRM1Q86U86 1689 aa21.68■■□□□ 1.06
HLA-DQB3-203ENST00000425319 GRIN2AQ12879 1464 aa21.67■■□□□ 1.06
HLA-DQB3-203ENST00000425319 FHAD1B1AJZ9 1412 aa21.66■■□□□ 1.06
HLA-DQB3-203ENST00000425319 NPM1P06748 294 aaKnown RBP eCLIP21.64■■□□□ 1.05
HLA-DQB3-203ENST00000425319 ABCA5Q8WWZ7 1642 aa21.64■■□□□ 1.05
HLA-DQB3-203ENST00000425319 JPH4Q96JJ6 628 aa21.59■■□□□ 1.05
HLA-DQB3-203ENST00000425319 NUP160Q12769 1436 aa21.58■■□□□ 1.05
HLA-DQB3-203ENST00000425319 TOP2BQ02880 1626 aa21.55■■□□□ 1.04
HLA-DQB3-203ENST00000425319 ERICH3Q5RHP9 1530 aa21.54■■□□□ 1.04
HLA-DQB3-203ENST00000425319 ADAMTS12P58397 1594 aa21.52■■□□□ 1.04
HLA-DQB3-203ENST00000425319 CEP170Q5SW79 1584 aa21.51■■□□□ 1.03
HLA-DQB3-203ENST00000425319 PRG4Q92954 1404 aaPredicted RBP21.5■■□□□ 1.03
HLA-DQB3-203ENST00000425319 BIVM-ERCC5R4GMW8 1640 aa21.48■■□□□ 1.03
HLA-DQB3-203ENST00000425319 ERCC6L2Q5T890 1561 aa21.44■■□□□ 1.02
HLA-DQB3-203ENST00000425319 FAM69CQ0P6D2 419 aa21.42■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms