RNA–Protein interactions for RNA: ENST00000425239.5

ATG4B-209, Transcript of autophagy related 4B cysteine peptidase, humanhuman

TSL 2

Gene ATG4B, Length 807 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4B-209ENST00000425239 NISCHQ9Y2I1 1504 aa37.99■■■■□ 3.67
ATG4B-209ENST00000425239 ABCC9O60706 1549 aa34.17■■■■□ 3.06
ATG4B-209ENST00000425239 CCDC180Q9P1Z9 1646 aa34.07■■■■□ 3.04
ATG4B-209ENST00000425239 RB1CC1Q8TDY2 1594 aa32.46■■■□□ 2.79
ATG4B-209ENST00000425239 DNAJC5BQ9UF47 199 aa32.33■■■□□ 2.77
ATG4B-209ENST00000425239 NACADO15069 1562 aa32.25■■■□□ 2.75
ATG4B-209ENST00000425239 DCAF8L2P0C7V8 631 aa32■■■□□ 2.71
ATG4B-209ENST00000425239 MYO15BQ96JP2 1530 aa31.85■■■□□ 2.69
ATG4B-209ENST00000425239 PABPN1Q86U42 306 aaKnown RBP eCLIP31.84■■■□□ 2.69
ATG4B-209ENST00000425239 UNC13AQ9UPW8 1703 aa31.8■■■□□ 2.68
ATG4B-209ENST00000425239 BICRAQ9NZM4 1560 aa31.65■■■□□ 2.66
ATG4B-209ENST00000425239 ZCCHC6Q5VYS8 1495 aaKnown RBP31.46■■■□□ 2.63
ATG4B-209ENST00000425239 DCAF1Q9Y4B6 1507 aa31.39■■■□□ 2.62
ATG4B-209ENST00000425239 SHROOM4Q9ULL8 1493 aa31.11■■■□□ 2.57
ATG4B-209ENST00000425239 SCRIBQ14160 1630 aa31■■■□□ 2.55
ATG4B-209ENST00000425239 CC2D2AQ9P2K1 1620 aa30.89■■■□□ 2.54
ATG4B-209ENST00000425239 EIF4G1Q04637 1599 aaKnown RBP30.8■■■□□ 2.52
ATG4B-209ENST00000425239 CECR2Q9BXF3 1484 aa30.8■■■□□ 2.52
ATG4B-209ENST00000425239 NCAPD3P42695 1498 aa29.85■■■□□ 2.37
ATG4B-209ENST00000425239 ATAD2BQ9ULI0 1458 aa29.72■■■□□ 2.35
ATG4B-209ENST00000425239 DNAJC5Q9H3Z4 198 aa29.68■■■□□ 2.34
ATG4B-209ENST00000425239 SMARCA4P51532 1647 aa29.62■■■□□ 2.33
ATG4B-209ENST00000425239 SMARCA2P51531 1590 aa29.56■■■□□ 2.32
ATG4B-209ENST00000425239 HMGXB3Q12766 1538 aa29.55■■■□□ 2.32
ATG4B-209ENST00000425239 CUX2O14529 1486 aa29.48■■■□□ 2.31
ATG4B-209ENST00000425239 BAZ1AQ9NRL2 1556 aaPredicted RBP29.43■■■□□ 2.3
ATG4B-209ENST00000425239 ERCC6Q03468 1493 aa29.42■■■□□ 2.3
ATG4B-209ENST00000425239 PEG3Q9GZU2 1588 aa29.4■■■□□ 2.3
ATG4B-209ENST00000425239 NESP48681 1621 aa29.38■■■□□ 2.29
ATG4B-209ENST00000425239 BAZ1BQ9UIG0 1483 aaKnown RBP29.34■■■□□ 2.29
ATG4B-209ENST00000425239 MROH2BQ7Z745 1585 aa29.29■■■□□ 2.28
ATG4B-209ENST00000425239 LAMC3Q9Y6N6 1575 aa29.11■■■□□ 2.25
ATG4B-209ENST00000425239 THOC2Q8NI27 1593 aaKnown RBP29.08■■■□□ 2.25
ATG4B-209ENST00000425239 KIF21AQ7Z4S6 1674 aa28.95■■■□□ 2.22
ATG4B-209ENST00000425239 PDS5BQ9NTI5 1447 aa28.93■■■□□ 2.22
ATG4B-209ENST00000425239 CADPSQ9ULU8 1353 aa28.9■■■□□ 2.22
ATG4B-209ENST00000425239 WIZO95785 1651 aa28.89■■■□□ 2.22
ATG4B-209ENST00000425239 MRC2Q9UBG0 1479 aa28.69■■■□□ 2.18
ATG4B-209ENST00000425239 WDR62O43379 1518 aa28.66■■■□□ 2.18
ATG4B-209ENST00000425239 RSF1Q96T23 1441 aaPredicted RBP28.66■■■□□ 2.18
ATG4B-209ENST00000425239 CFTRP13569 1480 aa28.57■■■□□ 2.16
ATG4B-209ENST00000425239 FANCD2Q9BXW9 1451 aa28.53■■■□□ 2.16
ATG4B-209ENST00000425239 CEP164Q9UPV0 1460 aa28.53■■■□□ 2.16
ATG4B-209ENST00000425239 TOP2AP11388 1531 aaKnown RBP28.49■■■□□ 2.15
ATG4B-209ENST00000425239 URB2Q14146 1524 aaKnown RBP28.35■■■□□ 2.13
ATG4B-209ENST00000425239 CCDC88BA6NC98 1476 aa28.24■■■□□ 2.11
ATG4B-209ENST00000425239 TRIM41Q8WV44 630 aa28.2■■■□□ 2.1
ATG4B-209ENST00000425239 PRDM2Q13029 1718 aa28.18■■■□□ 2.1
ATG4B-209ENST00000425239 OSCARQ8IYS5 282 aa28.15■■■□□ 2.1
ATG4B-209ENST00000425239 ZNF608Q9ULD9 1512 aaPredicted RBP28.02■■■□□ 2.08
ATG4B-209ENST00000425239 TOPBP1Q92547 1522 aa28■■■□□ 2.07
ATG4B-209ENST00000425239 IFT140Q96RY7 1462 aa28■■■□□ 2.07
ATG4B-209ENST00000425239 ABCC8Q09428 1581 aa27.9■■■□□ 2.06
ATG4B-209ENST00000425239 DNMBPQ6XZF7 1577 aa27.86■■■□□ 2.05
ATG4B-209ENST00000425239 TARBP1Q13395 1621 aaKnown RBP27.8■■■□□ 2.04
ATG4B-209ENST00000425239 EIF4G3O43432 1585 aaKnown RBP27.79■■■□□ 2.04
ATG4B-209ENST00000425239 RIMBP3CA6NJZ7 1639 aa27.78■■■□□ 2.04
ATG4B-209ENST00000425239 RIMBP3BA6NNM3 1639 aa27.78■■■□□ 2.04
ATG4B-209ENST00000425239 RIMBP3Q9UFD9 1639 aa27.78■■■□□ 2.04
ATG4B-209ENST00000425239 AQRO60306 1485 aaKnown RBP eCLIP27.75■■■□□ 2.032e-11■■■□□ 18.5
ATG4B-209ENST00000425239 POLA1P09884 1462 aaPredicted RBP27.71■■■□□ 2.03
ATG4B-209ENST00000425239 ARHGEF11O15085 1522 aa27.69■■■□□ 2.02
ATG4B-209ENST00000425239 RAD54L2Q9Y4B4 1467 aa27.63■■■□□ 2.01
ATG4B-209ENST00000425239 CHD1O14646 1710 aa27.59■■■□□ 2.01
ATG4B-209ENST00000425239 SOGA1O94964 1423 aa27.58■■■□□ 2
ATG4B-209ENST00000425239 TDRD9Q8NDG6 1382 aaKnown RBP27.55■■■□□ 2
ATG4B-209ENST00000425239 FGD5Q6ZNL6 1462 aa27.51■■□□□ 1.99
ATG4B-209ENST00000425239 CYB5RLQ6IPT4 315 aa27.5■■□□□ 1.99
ATG4B-209ENST00000425239 CUX1P39880 1505 aa27.5■■□□□ 1.99
ATG4B-209ENST00000425239 FBLN2P98095 1184 aa27.48■■□□□ 1.99
ATG4B-209ENST00000425239 WDR97A6NE52 1622 aa27.43■■□□□ 1.98
ATG4B-209ENST00000425239 ARAP1Q96P48 1450 aa27.43■■□□□ 1.98
ATG4B-209ENST00000425239 SNAPC4Q5SXM2 1469 aa27.4■■□□□ 1.98
ATG4B-209ENST00000425239 CLASP1Q7Z460 1538 aa27.34■■□□□ 1.97
ATG4B-209ENST00000425239 GRIN2BQ13224 1484 aa27.32■■□□□ 1.96
ATG4B-209ENST00000425239 MAGI1Q96QZ7 1491 aaPredicted RBP27.32■■□□□ 1.96
ATG4B-209ENST00000425239 CHMP7Q8WUX9 453 aaPredicted RBP27.3■■□□□ 1.96
ATG4B-209ENST00000425239 SYNJ2O15056 1496 aa27.25■■□□□ 1.95
ATG4B-209ENST00000425239 GAPVD1Q14C86 1478 aa27.22■■□□□ 1.95
ATG4B-209ENST00000425239 SYNJ1O43426 1573 aa27.22■■□□□ 1.95
ATG4B-209ENST00000425239 ABCA10Q8WWZ4 1543 aa27.21■■□□□ 1.95
ATG4B-209ENST00000425239 SUPT5HO00267 1087 aaKnown RBP27.21■■□□□ 1.95
ATG4B-209ENST00000425239 PBRM1Q86U86 1689 aa27.17■■□□□ 1.94
ATG4B-209ENST00000425239 ABCA5Q8WWZ7 1642 aa27.17■■□□□ 1.94
ATG4B-209ENST00000425239 TRHP20396 242 aaPredicted RBP27.13■■□□□ 1.93
ATG4B-209ENST00000425239 WRNQ14191 1432 aaPredicted RBP eCLIP27.04■■□□□ 1.92
ATG4B-209ENST00000425239 TOP2BQ02880 1626 aa27.01■■□□□ 1.92
ATG4B-209ENST00000425239 BIVM-ERCC5R4GMW8 1640 aa27.01■■□□□ 1.91
ATG4B-209ENST00000425239 GRIN2AQ12879 1464 aa26.99■■□□□ 1.91
ATG4B-209ENST00000425239 NUP160Q12769 1436 aa26.94■■□□□ 1.9
ATG4B-209ENST00000425239 ADAMTS12P58397 1594 aa26.93■■□□□ 1.9
ATG4B-209ENST00000425239 ERCC6L2Q5T890 1561 aa26.93■■□□□ 1.9
ATG4B-209ENST00000425239 CEP170Q5SW79 1584 aa26.92■■□□□ 1.9
ATG4B-209ENST00000425239 FHAD1B1AJZ9 1412 aa26.88■■□□□ 1.89
ATG4B-209ENST00000425239 ERICH3Q5RHP9 1530 aa26.85■■□□□ 1.89
ATG4B-209ENST00000425239 SHROOM2Q13796 1616 aa26.83■■□□□ 1.88
ATG4B-209ENST00000425239 JPH4Q96JJ6 628 aa26.66■■□□□ 1.86
ATG4B-209ENST00000425239 PRG4Q92954 1404 aaPredicted RBP26.65■■□□□ 1.86
ATG4B-209ENST00000425239 RUSC2Q8N2Y8 1516 aa26.57■■□□□ 1.84
ATG4B-209ENST00000425239 IGF1RP08069 1367 aa26.57■■□□□ 1.84
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms