RNA–Protein interactions for RNA: ENST00000425072.5

MDC1-205, Transcript of mediator of DNA damage checkpoint 1, humanhuman

TSL 3

Gene MDC1, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDC1-205ENST00000425072 NISCHQ9Y2I1 1504 aa23.73■■□□□ 1.39
MDC1-205ENST00000425072 CCDC180Q9P1Z9 1646 aa20.8■□□□□ 0.92
MDC1-205ENST00000425072 AEBP2Q6ZN18 517 aaPredicted RBP20.17■□□□□ 0.82
MDC1-205ENST00000425072 CHIC1Q5VXU3 224 aa20.02■□□□□ 0.8
MDC1-205ENST00000425072 ABCC9O60706 1549 aa19.88■□□□□ 0.77
MDC1-205ENST00000425072 ZCCHC6Q5VYS8 1495 aaKnown RBP19.81■□□□□ 0.76
MDC1-205ENST00000425072 DCAF8L2P0C7V8 631 aa19.81■□□□□ 0.76
MDC1-205ENST00000425072 DCAF1Q9Y4B6 1507 aa19.66■□□□□ 0.74
MDC1-205ENST00000425072 MYO15BQ96JP2 1530 aa19.56■□□□□ 0.72
MDC1-205ENST00000425072 DNAJC5BQ9UF47 199 aa19.54■□□□□ 0.72
MDC1-205ENST00000425072 NACADO15069 1562 aa19.51■□□□□ 0.71
MDC1-205ENST00000425072 RB1CC1Q8TDY2 1594 aa19.39■□□□□ 0.69
MDC1-205ENST00000425072 SHROOM4Q9ULL8 1493 aa19.09■□□□□ 0.65
MDC1-205ENST00000425072 SCRIBQ14160 1630 aa19■□□□□ 0.63
MDC1-205ENST00000425072 UNC13AQ9UPW8 1703 aa18.86■□□□□ 0.61
MDC1-205ENST00000425072 PABPN1Q86U42 306 aaKnown RBP eCLIP18.75■□□□□ 0.59
MDC1-205ENST00000425072 DNAJC5Q9H3Z4 198 aa18.7■□□□□ 0.58
MDC1-205ENST00000425072 BICRAQ9NZM4 1560 aa18.69■□□□□ 0.58
MDC1-205ENST00000425072 CECR2Q9BXF3 1484 aa18.39■□□□□ 0.53
MDC1-205ENST00000425072 BAZ1AQ9NRL2 1556 aaPredicted RBP18.36■□□□□ 0.53
MDC1-205ENST00000425072 SUPT5HO00267 1087 aaKnown RBP18.35■□□□□ 0.53
MDC1-205ENST00000425072 RSF1Q96T23 1441 aaPredicted RBP18.3■□□□□ 0.52
MDC1-205ENST00000425072 MROH2BQ7Z745 1585 aa18.25■□□□□ 0.51
MDC1-205ENST00000425072 SMARCA4P51532 1647 aa18.25■□□□□ 0.51
MDC1-205ENST00000425072 EIF4G1Q04637 1599 aaKnown RBP18.19■□□□□ 0.5
MDC1-205ENST00000425072 WIZO95785 1651 aa18.09■□□□□ 0.49
MDC1-205ENST00000425072 SMARCA2P51531 1590 aa18.08■□□□□ 0.49
MDC1-205ENST00000425072 PEG3Q9GZU2 1588 aa18.07■□□□□ 0.48
MDC1-205ENST00000425072 ATAD2BQ9ULI0 1458 aa18.07■□□□□ 0.48
MDC1-205ENST00000425072 NCAPD3P42695 1498 aa18.01■□□□□ 0.47
MDC1-205ENST00000425072 CC2D2AQ9P2K1 1620 aa17.99■□□□□ 0.47
MDC1-205ENST00000425072 BAZ1BQ9UIG0 1483 aaKnown RBP17.95■□□□□ 0.46
MDC1-205ENST00000425072 TOP2AP11388 1531 aaKnown RBP17.93■□□□□ 0.46
MDC1-205ENST00000425072 HMGXB3Q12766 1538 aa17.89■□□□□ 0.45
MDC1-205ENST00000425072 CCDC88BA6NC98 1476 aa17.77■□□□□ 0.44
MDC1-205ENST00000425072 PHF23Q9BUL5 403 aaPredicted RBP17.62■□□□□ 0.41
MDC1-205ENST00000425072 CADPSQ9ULU8 1353 aa17.54■□□□□ 0.4
MDC1-205ENST00000425072 CFTRP13569 1480 aa17.5■□□□□ 0.39
MDC1-205ENST00000425072 CUX2O14529 1486 aa17.43■□□□□ 0.38
MDC1-205ENST00000425072 LAMC3Q9Y6N6 1575 aa17.41■□□□□ 0.38
MDC1-205ENST00000425072 TRIM41Q8WV44 630 aa17.39■□□□□ 0.37
MDC1-205ENST00000425072 PDS5BQ9NTI5 1447 aa17.37■□□□□ 0.37
MDC1-205ENST00000425072 PRDM2Q13029 1718 aa17.34■□□□□ 0.37
MDC1-205ENST00000425072 NESP48681 1621 aa17.33■□□□□ 0.37
MDC1-205ENST00000425072 FANCD2Q9BXW9 1451 aa17.29■□□□□ 0.36
MDC1-205ENST00000425072 WRNQ14191 1432 aaPredicted RBP eCLIP17.25■□□□□ 0.35
MDC1-205ENST00000425072 CEP164Q9UPV0 1460 aa17.21■□□□□ 0.35
MDC1-205ENST00000425072 ABCC8Q09428 1581 aa17.2■□□□□ 0.34
MDC1-205ENST00000425072 ERCC6Q03468 1493 aa17.14■□□□□ 0.33
MDC1-205ENST00000425072 KIF21AQ7Z4S6 1674 aa17.11■□□□□ 0.33
MDC1-205ENST00000425072 TOP2BQ02880 1626 aa17.1■□□□□ 0.33
MDC1-205ENST00000425072 CUX1P39880 1505 aa17.09■□□□□ 0.33
MDC1-205ENST00000425072 SENP3Q9H4L4 574 aaPredicted RBP17.08■□□□□ 0.32
MDC1-205ENST00000425072 BIVM-ERCC5R4GMW8 1640 aa17.07■□□□□ 0.32
MDC1-205ENST00000425072 SYNJ1O43426 1573 aa17.07■□□□□ 0.32
MDC1-205ENST00000425072 DNMBPQ6XZF7 1577 aa17.06■□□□□ 0.32
MDC1-205ENST00000425072 MRC2Q9UBG0 1479 aa17.06■□□□□ 0.32
MDC1-205ENST00000425072 TOPBP1Q92547 1522 aa17.05■□□□□ 0.32
MDC1-205ENST00000425072 URB2Q14146 1524 aaKnown RBP17.02■□□□□ 0.32
MDC1-205ENST00000425072 SOGA1O94964 1423 aa16.97■□□□□ 0.31
MDC1-205ENST00000425072 FGD5Q6ZNL6 1462 aa16.97■□□□□ 0.31
MDC1-205ENST00000425072 EEA1Q15075 1411 aa16.95■□□□□ 0.3
MDC1-205ENST00000425072 WDR62O43379 1518 aa16.94■□□□□ 0.3
MDC1-205ENST00000425072 FAM9AQ8IZU1 332 aaPredicted RBP16.93■□□□□ 0.3
MDC1-205ENST00000425072 POLA1P09884 1462 aaPredicted RBP16.93■□□□□ 0.3
MDC1-205ENST00000425072 CSRNP3Q8WYN3 585 aa16.91■□□□□ 0.3
MDC1-205ENST00000425072 KIF27Q86VH2 1401 aa16.89■□□□□ 0.29
MDC1-205ENST00000425072 THOC2Q8NI27 1593 aaKnown RBP16.89■□□□□ 0.29
MDC1-205ENST00000425072 RAD54L2Q9Y4B4 1467 aa16.86■□□□□ 0.29
MDC1-205ENST00000425072 IFT140Q96RY7 1462 aa16.85■□□□□ 0.29
MDC1-205ENST00000425072 ABCA10Q8WWZ4 1543 aa16.85■□□□□ 0.29
MDC1-205ENST00000425072 RUSC2Q8N2Y8 1516 aa16.81■□□□□ 0.28
MDC1-205ENST00000425072 TDRD9Q8NDG6 1382 aaKnown RBP16.78■□□□□ 0.28
MDC1-205ENST00000425072 TARBP1Q13395 1621 aaKnown RBP16.78■□□□□ 0.28
MDC1-205ENST00000425072 IGF1RP08069 1367 aa16.77■□□□□ 0.27
MDC1-205ENST00000425072 GAPVD1Q14C86 1478 aa16.74■□□□□ 0.27
MDC1-205ENST00000425072 LOC105371045A0A1W2PR82 267 aa16.74■□□□□ 0.27
MDC1-205ENST00000425072 WDR97A6NE52 1622 aa16.73■□□□□ 0.27
MDC1-205ENST00000425072 AQRO60306 1485 aaKnown RBP eCLIP16.7■□□□□ 0.265e-7■■□□□ 14.4
MDC1-205ENST00000425072 CARMIL1Q5VZK9 1371 aa16.69■□□□□ 0.26
MDC1-205ENST00000425072 UBTFP17480 764 aaKnown RBP16.68■□□□□ 0.26
MDC1-205ENST00000425072 ERICH3Q5RHP9 1530 aa16.67■□□□□ 0.26
MDC1-205ENST00000425072 GRIN2BQ13224 1484 aa16.67■□□□□ 0.26
MDC1-205ENST00000425072 ABCA5Q8WWZ7 1642 aa16.66■□□□□ 0.26
MDC1-205ENST00000425072 ZNF608Q9ULD9 1512 aaPredicted RBP16.65■□□□□ 0.26
MDC1-205ENST00000425072 EHMT2Q96KQ7 1210 aa16.64■□□□□ 0.25
MDC1-205ENST00000425072 PRXQ9BXM0 1461 aa16.64■□□□□ 0.25
MDC1-205ENST00000425072 KIF21BO75037 1637 aa16.62■□□□□ 0.25
MDC1-205ENST00000425072 GOLGA3Q08378 1498 aa16.61■□□□□ 0.25
MDC1-205ENST00000425072 RAPGEF2Q9Y4G8 1499 aa16.61■□□□□ 0.25
MDC1-205ENST00000425072 CUL7Q14999 1698 aa16.59■□□□□ 0.25
MDC1-205ENST00000425072 FHAD1B1AJZ9 1412 aa16.58■□□□□ 0.24
MDC1-205ENST00000425072 PBRM1Q86U86 1689 aa16.57■□□□□ 0.24
MDC1-205ENST00000425072 EIF4G3O43432 1585 aaKnown RBP16.57■□□□□ 0.24
MDC1-205ENST00000425072 TNIKQ9UKE5 1360 aa16.56■□□□□ 0.24
MDC1-205ENST00000425072 CHMP7Q8WUX9 453 aaPredicted RBP16.56■□□□□ 0.24
MDC1-205ENST00000425072 MAGI1Q96QZ7 1491 aaPredicted RBP16.54■□□□□ 0.24
MDC1-205ENST00000425072 FBLN2P98095 1184 aa16.51■□□□□ 0.23
MDC1-205ENST00000425072 SNAPC4Q5SXM2 1469 aa16.5■□□□□ 0.23
MDC1-205ENST00000425072 SYNJ2O15056 1496 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms