RNA–Protein interactions for RNA: ENST00000424804.6

VRK3-203, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,061 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-203ENST00000424804 NISCHQ9Y2I1 1504 aa32.72■■■□□ 2.83
VRK3-203ENST00000424804 CCDC180Q9P1Z9 1646 aa29.3■■■□□ 2.28
VRK3-203ENST00000424804 ABCC9O60706 1549 aa29.29■■■□□ 2.28
VRK3-203ENST00000424804 RB1CC1Q8TDY2 1594 aa27.86■■■□□ 2.05
VRK3-203ENST00000424804 NACADO15069 1562 aa27.69■■■□□ 2.02
VRK3-203ENST00000424804 DNAJC5BQ9UF47 199 aa27.62■■■□□ 2.01
VRK3-203ENST00000424804 DCAF8L2P0C7V8 631 aa27.48■■□□□ 1.99
VRK3-203ENST00000424804 MYO15BQ96JP2 1530 aa27.37■■□□□ 1.97
VRK3-203ENST00000424804 UNC13AQ9UPW8 1703 aa27.33■■□□□ 1.97
VRK3-203ENST00000424804 PABPN1Q86U42 306 aaKnown RBP eCLIP27.3■■□□□ 1.96
VRK3-203ENST00000424804 BICRAQ9NZM4 1560 aa27.18■■□□□ 1.94
VRK3-203ENST00000424804 ZCCHC6Q5VYS8 1495 aaKnown RBP27.12■■□□□ 1.93
VRK3-203ENST00000424804 DCAF1Q9Y4B6 1507 aa27.03■■□□□ 1.92
VRK3-203ENST00000424804 SCRIBQ14160 1630 aa26.68■■□□□ 1.86
VRK3-203ENST00000424804 SHROOM4Q9ULL8 1493 aa26.68■■□□□ 1.86
VRK3-203ENST00000424804 CC2D2AQ9P2K1 1620 aa26.48■■□□□ 1.83
VRK3-203ENST00000424804 EIF4G1Q04637 1599 aaKnown RBP26.42■■□□□ 1.82
VRK3-203ENST00000424804 CECR2Q9BXF3 1484 aa26.37■■□□□ 1.81
VRK3-203ENST00000424804 NCAPD3P42695 1498 aa25.62■■□□□ 1.69
VRK3-203ENST00000424804 ATAD2BQ9ULI0 1458 aa25.54■■□□□ 1.68
VRK3-203ENST00000424804 SMARCA4P51532 1647 aa25.49■■□□□ 1.67
VRK3-203ENST00000424804 SMARCA2P51531 1590 aa25.39■■□□□ 1.66
VRK3-203ENST00000424804 HMGXB3Q12766 1538 aa25.38■■□□□ 1.65
VRK3-203ENST00000424804 BAZ1AQ9NRL2 1556 aaPredicted RBP25.33■■□□□ 1.65
VRK3-203ENST00000424804 PEG3Q9GZU2 1588 aa25.29■■□□□ 1.64
VRK3-203ENST00000424804 DNAJC5Q9H3Z4 198 aa25.25■■□□□ 1.63
VRK3-203ENST00000424804 MROH2BQ7Z745 1585 aa25.23■■□□□ 1.63
VRK3-203ENST00000424804 NESP48681 1621 aa25.22■■□□□ 1.63
VRK3-203ENST00000424804 BAZ1BQ9UIG0 1483 aaKnown RBP25.21■■□□□ 1.63
VRK3-203ENST00000424804 CUX2O14529 1486 aa25.21■■□□□ 1.63
VRK3-203ENST00000424804 ERCC6Q03468 1493 aa25.19■■□□□ 1.62
VRK3-203ENST00000424804 LAMC3Q9Y6N6 1575 aa24.97■■□□□ 1.59
VRK3-203ENST00000424804 THOC2Q8NI27 1593 aaKnown RBP24.94■■□□□ 1.58
VRK3-203ENST00000424804 WIZO95785 1651 aa24.91■■□□□ 1.58
VRK3-203ENST00000424804 KIF21AQ7Z4S6 1674 aa24.86■■□□□ 1.57
VRK3-203ENST00000424804 CADPSQ9ULU8 1353 aa24.81■■□□□ 1.56
VRK3-203ENST00000424804 PDS5BQ9NTI5 1447 aa24.81■■□□□ 1.56
VRK3-203ENST00000424804 RSF1Q96T23 1441 aaPredicted RBP24.71■■□□□ 1.55
VRK3-203ENST00000424804 MRC2Q9UBG0 1479 aa24.61■■□□□ 1.53
VRK3-203ENST00000424804 WDR62O43379 1518 aa24.58■■□□□ 1.53
VRK3-203ENST00000424804 CFTRP13569 1480 aa24.56■■□□□ 1.52
VRK3-203ENST00000424804 TOP2AP11388 1531 aaKnown RBP24.56■■□□□ 1.52
VRK3-203ENST00000424804 FANCD2Q9BXW9 1451 aa24.51■■□□□ 1.51
VRK3-203ENST00000424804 CEP164Q9UPV0 1460 aa24.5■■□□□ 1.51
VRK3-203ENST00000424804 URB2Q14146 1524 aaKnown RBP24.36■■□□□ 1.49
VRK3-203ENST00000424804 CCDC88BA6NC98 1476 aa24.33■■□□□ 1.49
VRK3-203ENST00000424804 PRDM2Q13029 1718 aa24.27■■□□□ 1.48
VRK3-203ENST00000424804 TOPBP1Q92547 1522 aa24.07■■□□□ 1.44
VRK3-203ENST00000424804 ZNF608Q9ULD9 1512 aaPredicted RBP24.06■■□□□ 1.44
VRK3-203ENST00000424804 OSCARQ8IYS5 282 aa24.06■■□□□ 1.44
VRK3-203ENST00000424804 TRIM41Q8WV44 630 aa24.04■■□□□ 1.44
VRK3-203ENST00000424804 IFT140Q96RY7 1462 aa24.03■■□□□ 1.44
VRK3-203ENST00000424804 ABCC8Q09428 1581 aa23.96■■□□□ 1.43
VRK3-203ENST00000424804 DNMBPQ6XZF7 1577 aa23.96■■□□□ 1.43
VRK3-203ENST00000424804 TARBP1Q13395 1621 aaKnown RBP23.89■■□□□ 1.42
VRK3-203ENST00000424804 EIF4G3O43432 1585 aaKnown RBP23.86■■□□□ 1.41
VRK3-203ENST00000424804 POLA1P09884 1462 aaPredicted RBP23.83■■□□□ 1.41
VRK3-203ENST00000424804 AQRO60306 1485 aaKnown RBP eCLIP23.82■■□□□ 1.4
VRK3-203ENST00000424804 RIMBP3CA6NJZ7 1639 aa23.78■■□□□ 1.4
VRK3-203ENST00000424804 RIMBP3BA6NNM3 1639 aa23.78■■□□□ 1.4
VRK3-203ENST00000424804 RIMBP3Q9UFD9 1639 aa23.78■■□□□ 1.4
VRK3-203ENST00000424804 RAD54L2Q9Y4B4 1467 aa23.76■■□□□ 1.39
VRK3-203ENST00000424804 ARHGEF11O15085 1522 aa23.7■■□□□ 1.38
VRK3-203ENST00000424804 SOGA1O94964 1423 aa23.7■■□□□ 1.38
VRK3-203ENST00000424804 CHD1O14646 1710 aa23.7■■□□□ 1.38
VRK3-203ENST00000424804 CUX1P39880 1505 aa23.69■■□□□ 1.38
VRK3-203ENST00000424804 TDRD9Q8NDG6 1382 aaKnown RBP23.67■■□□□ 1.38
VRK3-203ENST00000424804 FGD5Q6ZNL6 1462 aa23.67■■□□□ 1.38
VRK3-203ENST00000424804 WDR97A6NE52 1622 aa23.57■■□□□ 1.36
VRK3-203ENST00000424804 FBLN2P98095 1184 aa23.55■■□□□ 1.36
VRK3-203ENST00000424804 SUPT5HO00267 1087 aaKnown RBP23.54■■□□□ 1.36
VRK3-203ENST00000424804 SNAPC4Q5SXM2 1469 aa23.54■■□□□ 1.36
VRK3-203ENST00000424804 CYB5RLQ6IPT4 315 aa23.51■■□□□ 1.35
VRK3-203ENST00000424804 ARAP1Q96P48 1450 aa23.5■■□□□ 1.35
VRK3-203ENST00000424804 GRIN2BQ13224 1484 aa23.48■■□□□ 1.35
VRK3-203ENST00000424804 MAGI1Q96QZ7 1491 aaPredicted RBP23.47■■□□□ 1.35
VRK3-203ENST00000424804 CLASP1Q7Z460 1538 aa23.47■■□□□ 1.35
VRK3-203ENST00000424804 ABCA10Q8WWZ4 1543 aa23.42■■□□□ 1.34
VRK3-203ENST00000424804 CHMP7Q8WUX9 453 aaPredicted RBP23.41■■□□□ 1.34
VRK3-203ENST00000424804 SYNJ2O15056 1496 aa23.4■■□□□ 1.34
VRK3-203ENST00000424804 GAPVD1Q14C86 1478 aa23.4■■□□□ 1.34
VRK3-203ENST00000424804 PBRM1Q86U86 1689 aa23.38■■□□□ 1.33
VRK3-203ENST00000424804 ABCA5Q8WWZ7 1642 aa23.38■■□□□ 1.33
VRK3-203ENST00000424804 SYNJ1O43426 1573 aa23.35■■□□□ 1.33
VRK3-203ENST00000424804 BIVM-ERCC5R4GMW8 1640 aa23.3■■□□□ 1.32
VRK3-203ENST00000424804 TOP2BQ02880 1626 aa23.29■■□□□ 1.32
VRK3-203ENST00000424804 WRNQ14191 1432 aaPredicted RBP eCLIP23.27■■□□□ 1.32
VRK3-203ENST00000424804 GRIN2AQ12879 1464 aa23.18■■□□□ 1.3
VRK3-203ENST00000424804 ADAMTS12P58397 1594 aa23.18■■□□□ 1.3
VRK3-203ENST00000424804 TRHP20396 242 aaPredicted RBP23.15■■□□□ 1.3
VRK3-203ENST00000424804 NUP160Q12769 1436 aa23.15■■□□□ 1.3
VRK3-203ENST00000424804 CEP170Q5SW79 1584 aa23.14■■□□□ 1.29
VRK3-203ENST00000424804 ERCC6L2Q5T890 1561 aa23.14■■□□□ 1.29
VRK3-203ENST00000424804 FHAD1B1AJZ9 1412 aa23.11■■□□□ 1.29
VRK3-203ENST00000424804 ERICH3Q5RHP9 1530 aa23.1■■□□□ 1.29
VRK3-203ENST00000424804 SHROOM2Q13796 1616 aa23.05■■□□□ 1.28
VRK3-203ENST00000424804 JPH4Q96JJ6 628 aa22.9■■□□□ 1.26
VRK3-203ENST00000424804 PRG4Q92954 1404 aaPredicted RBP22.88■■□□□ 1.25
VRK3-203ENST00000424804 IGF1RP08069 1367 aa22.88■■□□□ 1.25
VRK3-203ENST00000424804 RUSC2Q8N2Y8 1516 aa22.85■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms