RNA–Protein interactions for RNA: ENST00000423567.1

USP49-204, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 2

Gene USP49, Length 752 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-204ENST00000423567 NISCHQ9Y2I1 1504 aa26.5■■□□□ 1.83
USP49-204ENST00000423567 AEBP2Q6ZN18 517 aaPredicted RBP26.41■■□□□ 1.82
USP49-204ENST00000423567 CHIC1Q5VXU3 224 aa25.38■■□□□ 1.65
USP49-204ENST00000423567 CCDC180Q9P1Z9 1646 aa23.57■■□□□ 1.36
USP49-204ENST00000423567 ABCC9O60706 1549 aa23.18■■□□□ 1.3
USP49-204ENST00000423567 SENP3Q9H4L4 574 aaPredicted RBP22.47■■□□□ 1.19
USP49-204ENST00000423567 DCAF8L2P0C7V8 631 aa22.29■■□□□ 1.16
USP49-204ENST00000423567 PHF23Q9BUL5 403 aaPredicted RBP22.28■■□□□ 1.16
USP49-204ENST00000423567 RB1CC1Q8TDY2 1594 aa22.27■■□□□ 1.16
USP49-204ENST00000423567 NACADO15069 1562 aa22.22■■□□□ 1.15
USP49-204ENST00000423567 ZCCHC6Q5VYS8 1495 aaKnown RBP22.06■■□□□ 1.12
USP49-204ENST00000423567 MYO15BQ96JP2 1530 aa22.06■■□□□ 1.12
USP49-204ENST00000423567 DCAF1Q9Y4B6 1507 aa21.93■■□□□ 1.1
USP49-204ENST00000423567 PABPN1Q86U42 306 aaKnown RBP eCLIP21.67■■□□□ 1.06
USP49-204ENST00000423567 UNC13AQ9UPW8 1703 aa21.63■■□□□ 1.05
USP49-204ENST00000423567 SCRIBQ14160 1630 aa21.52■■□□□ 1.04
USP49-204ENST00000423567 BICRAQ9NZM4 1560 aa21.52■■□□□ 1.04
USP49-204ENST00000423567 SHROOM4Q9ULL8 1493 aa21.39■■□□□ 1.01
USP49-204ENST00000423567 DNAJC5BQ9UF47 199 aa21.3■■□□□ 1
USP49-204ENST00000423567 EIF4G1Q04637 1599 aaKnown RBP21.01■□□□□ 0.95
USP49-204ENST00000423567 CC2D2AQ9P2K1 1620 aa20.93■□□□□ 0.94
USP49-204ENST00000423567 FOXD1Q16676 465 aa20.91■□□□□ 0.94
USP49-204ENST00000423567 CECR2Q9BXF3 1484 aa20.86■□□□□ 0.93
USP49-204ENST00000423567 BAZ1AQ9NRL2 1556 aaPredicted RBP20.57■□□□□ 0.88
USP49-204ENST00000423567 SMARCA4P51532 1647 aa20.56■□□□□ 0.88
USP49-204ENST00000423567 NCAPD3P42695 1498 aa20.5■□□□□ 0.87
USP49-204ENST00000423567 ATAD2BQ9ULI0 1458 aa20.5■□□□□ 0.87
USP49-204ENST00000423567 SMARCA2P51531 1590 aa20.49■□□□□ 0.87
USP49-204ENST00000423567 PLPPR3Q6T4P5 718 aa20.41■□□□□ 0.86
USP49-204ENST00000423567 MROH2BQ7Z745 1585 aa20.41■□□□□ 0.86
USP49-204ENST00000423567 HMGXB3Q12766 1538 aa20.39■□□□□ 0.85
USP49-204ENST00000423567 PEG3Q9GZU2 1588 aa20.36■□□□□ 0.85
USP49-204ENST00000423567 BAZ1BQ9UIG0 1483 aaKnown RBP20.36■□□□□ 0.85
USP49-204ENST00000423567 RSF1Q96T23 1441 aaPredicted RBP20.18■□□□□ 0.82
USP49-204ENST00000423567 WIZO95785 1651 aa20.16■□□□□ 0.82
USP49-204ENST00000423567 ERCC6Q03468 1493 aa20.05■□□□□ 0.8
USP49-204ENST00000423567 NESP48681 1621 aa20.01■□□□□ 0.79
USP49-204ENST00000423567 TOP2AP11388 1531 aaKnown RBP19.99■□□□□ 0.79
USP49-204ENST00000423567 LAMC3Q9Y6N6 1575 aa19.97■□□□□ 0.79
USP49-204ENST00000423567 CADPSQ9ULU8 1353 aa19.93■□□□□ 0.78
USP49-204ENST00000423567 PDS5BQ9NTI5 1447 aa19.9■□□□□ 0.78
USP49-204ENST00000423567 CUX2O14529 1486 aa19.82■□□□□ 0.76
USP49-204ENST00000423567 PPP6R1Q9UPN7 881 aa19.79■□□□□ 0.76
USP49-204ENST00000423567 CFTRP13569 1480 aa19.77■□□□□ 0.76
USP49-204ENST00000423567 CCDC88BA6NC98 1476 aa19.75■□□□□ 0.75
USP49-204ENST00000423567 ADRA2BP18089 450 aa19.74■□□□□ 0.75
USP49-204ENST00000423567 KIF21AQ7Z4S6 1674 aa19.73■□□□□ 0.75
USP49-204ENST00000423567 THOC2Q8NI27 1593 aaKnown RBP19.7■□□□□ 0.74
USP49-204ENST00000423567 FANCD2Q9BXW9 1451 aa19.69■□□□□ 0.74
USP49-204ENST00000423567 CEP164Q9UPV0 1460 aa19.68■□□□□ 0.74
USP49-204ENST00000423567 SUPT5HO00267 1087 aaKnown RBP19.68■□□□□ 0.74
USP49-204ENST00000423567 MRC2Q9UBG0 1479 aa19.67■□□□□ 0.74
USP49-204ENST00000423567 PIAS4Q8N2W9 510 aaPredicted RBP19.61■□□□□ 0.73
USP49-204ENST00000423567 WDR62O43379 1518 aa19.57■□□□□ 0.72
USP49-204ENST00000423567 PRDM2Q13029 1718 aa19.53■□□□□ 0.72
USP49-204ENST00000423567 URB2Q14146 1524 aaKnown RBP19.46■□□□□ 0.71
USP49-204ENST00000423567 MSH5O43196 834 aa19.44■□□□□ 0.7
USP49-204ENST00000423567 ABCC8Q09428 1581 aa19.39■□□□□ 0.69
USP49-204ENST00000423567 TOPBP1Q92547 1522 aa19.35■□□□□ 0.69
USP49-204ENST00000423567 DNMBPQ6XZF7 1577 aa19.32■□□□□ 0.68
USP49-204ENST00000423567 DNAJC5Q9H3Z4 198 aa19.3■□□□□ 0.68
USP49-204ENST00000423567 IFT140Q96RY7 1462 aa19.28■□□□□ 0.68
USP49-204ENST00000423567 POLA1P09884 1462 aaPredicted RBP19.18■□□□□ 0.66
USP49-204ENST00000423567 CUX1P39880 1505 aa19.15■□□□□ 0.66
USP49-204ENST00000423567 ZNF608Q9ULD9 1512 aaPredicted RBP19.15■□□□□ 0.66
USP49-204ENST00000423567 SOGA1O94964 1423 aa19.13■□□□□ 0.65
USP49-204ENST00000423567 FGD5Q6ZNL6 1462 aa19.13■□□□□ 0.65
USP49-204ENST00000423567 RAD54L2Q9Y4B4 1467 aa19.1■□□□□ 0.65
USP49-204ENST00000423567 TARBP1Q13395 1621 aaKnown RBP19.1■□□□□ 0.65
USP49-204ENST00000423567 EIF4G3O43432 1585 aaKnown RBP19.06■□□□□ 0.64
USP49-204ENST00000423567 AQRO60306 1485 aaKnown RBP eCLIP19.06■□□□□ 0.64
USP49-204ENST00000423567 WRNQ14191 1432 aaPredicted RBP eCLIP19.06■□□□□ 0.64
USP49-204ENST00000423567 OSCARQ8IYS5 282 aa19.03■□□□□ 0.64
USP49-204ENST00000423567 TDRD9Q8NDG6 1382 aaKnown RBP19.03■□□□□ 0.64
USP49-204ENST00000423567 WDR97A6NE52 1622 aa19■□□□□ 0.63
USP49-204ENST00000423567 TOP2BQ02880 1626 aa18.97■□□□□ 0.63
USP49-204ENST00000423567 SYNJ1O43426 1573 aa18.95■□□□□ 0.62
USP49-204ENST00000423567 BIVM-ERCC5R4GMW8 1640 aa18.95■□□□□ 0.62
USP49-204ENST00000423567 ABCA10Q8WWZ4 1543 aa18.94■□□□□ 0.62
USP49-204ENST00000423567 FBLN2P98095 1184 aa18.93■□□□□ 0.62
USP49-204ENST00000423567 GRIN2BQ13224 1484 aa18.92■□□□□ 0.62
USP49-204ENST00000423567 GAPVD1Q14C86 1478 aa18.9■□□□□ 0.62
USP49-204ENST00000423567 SNAPC4Q5SXM2 1469 aa18.89■□□□□ 0.61
USP49-204ENST00000423567 MAGI1Q96QZ7 1491 aaPredicted RBP18.87■□□□□ 0.61
USP49-204ENST00000423567 CHMP7Q8WUX9 453 aaPredicted RBP18.86■□□□□ 0.61
USP49-204ENST00000423567 ABCA5Q8WWZ7 1642 aa18.83■□□□□ 0.61
USP49-204ENST00000423567 CHD1O14646 1710 aa18.8■□□□□ 0.6
USP49-204ENST00000423567 PBRM1Q86U86 1689 aa18.79■□□□□ 0.6
USP49-204ENST00000423567 SYNJ2O15056 1496 aa18.79■□□□□ 0.6
USP49-204ENST00000423567 ERICH3Q5RHP9 1530 aa18.72■□□□□ 0.59
USP49-204ENST00000423567 FHAD1B1AJZ9 1412 aa18.69■□□□□ 0.58
USP49-204ENST00000423567 KIF27Q86VH2 1401 aa18.69■□□□□ 0.58
USP49-204ENST00000423567 TRIM41Q8WV44 630 aa18.69■□□□□ 0.58
USP49-204ENST00000423567 ADAMTS12P58397 1594 aa18.68■□□□□ 0.58
USP49-204ENST00000423567 GRIN2AQ12879 1464 aa18.66■□□□□ 0.58
USP49-204ENST00000423567 ARHGEF11O15085 1522 aa18.66■□□□□ 0.58
USP49-204ENST00000423567 RIMBP3CA6NJZ7 1639 aa18.64■□□□□ 0.57
USP49-204ENST00000423567 RIMBP3BA6NNM3 1639 aa18.64■□□□□ 0.57
USP49-204ENST00000423567 RIMBP3Q9UFD9 1639 aa18.64■□□□□ 0.57
USP49-204ENST00000423567 CLASP1Q7Z460 1538 aa18.63■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms