RNA–Protein interactions for RNA: ENST00000422770.5

HERC3-204, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 3, humanhuman

TSL 4

Gene HERC3, Length 579 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC3-204ENST00000422770 NISCHQ9Y2I1 1504 aa23.37■■□□□ 1.33
HERC3-204ENST00000422770 CCDC180Q9P1Z9 1646 aa20.86■□□□□ 0.93
HERC3-204ENST00000422770 ABCC9O60706 1549 aa20.43■□□□□ 0.86
HERC3-204ENST00000422770 DCAF8L2P0C7V8 631 aa19.66■□□□□ 0.74
HERC3-204ENST00000422770 RB1CC1Q8TDY2 1594 aa19.63■□□□□ 0.73
HERC3-204ENST00000422770 NACADO15069 1562 aa19.55■□□□□ 0.72
HERC3-204ENST00000422770 ZCCHC6Q5VYS8 1495 aaKnown RBP19.47■□□□□ 0.71
HERC3-204ENST00000422770 MYO15BQ96JP2 1530 aa19.33■□□□□ 0.68
HERC3-204ENST00000422770 UNC13AQ9UPW8 1703 aa19.28■□□□□ 0.68
HERC3-204ENST00000422770 DCAF1Q9Y4B6 1507 aa19.27■□□□□ 0.68
HERC3-204ENST00000422770 SCRIBQ14160 1630 aa19.1■□□□□ 0.65
HERC3-204ENST00000422770 PABPN1Q86U42 306 aaKnown RBP eCLIP19.06■□□□□ 0.64
HERC3-204ENST00000422770 BICRAQ9NZM4 1560 aa18.98■□□□□ 0.63
HERC3-204ENST00000422770 DNAJC5BQ9UF47 199 aa18.8■□□□□ 0.6
HERC3-204ENST00000422770 SHROOM4Q9ULL8 1493 aa18.72■□□□□ 0.59
HERC3-204ENST00000422770 EIF4G1Q04637 1599 aaKnown RBP18.51■□□□□ 0.55
HERC3-204ENST00000422770 CC2D2AQ9P2K1 1620 aa18.48■□□□□ 0.55
HERC3-204ENST00000422770 CECR2Q9BXF3 1484 aa18.32■□□□□ 0.52
HERC3-204ENST00000422770 SMARCA4P51532 1647 aa18.2■□□□□ 0.5
HERC3-204ENST00000422770 BAZ1AQ9NRL2 1556 aaPredicted RBP18.15■□□□□ 0.5
HERC3-204ENST00000422770 SMARCA2P51531 1590 aa18.05■□□□□ 0.48
HERC3-204ENST00000422770 MROH2BQ7Z745 1585 aa18.03■□□□□ 0.48
HERC3-204ENST00000422770 ATAD2BQ9ULI0 1458 aa18.02■□□□□ 0.48
HERC3-204ENST00000422770 NCAPD3P42695 1498 aa17.97■□□□□ 0.47
HERC3-204ENST00000422770 HMGXB3Q12766 1538 aa17.96■□□□□ 0.47
HERC3-204ENST00000422770 BAZ1BQ9UIG0 1483 aaKnown RBP17.95■□□□□ 0.46
HERC3-204ENST00000422770 PEG3Q9GZU2 1588 aa17.92■□□□□ 0.46
HERC3-204ENST00000422770 WIZO95785 1651 aa17.91■□□□□ 0.46
HERC3-204ENST00000422770 RSF1Q96T23 1441 aaPredicted RBP17.77■□□□□ 0.44
HERC3-204ENST00000422770 TOP2AP11388 1531 aaKnown RBP17.67■□□□□ 0.42
HERC3-204ENST00000422770 NESP48681 1621 aa17.65■□□□□ 0.42
HERC3-204ENST00000422770 ERCC6Q03468 1493 aa17.64■□□□□ 0.41
HERC3-204ENST00000422770 LAMC3Q9Y6N6 1575 aa17.59■□□□□ 0.41
HERC3-204ENST00000422770 KIF21AQ7Z4S6 1674 aa17.54■□□□□ 0.4
HERC3-204ENST00000422770 CADPSQ9ULU8 1353 aa17.47■□□□□ 0.39
HERC3-204ENST00000422770 SUPT5HO00267 1087 aaKnown RBP17.45■□□□□ 0.38
HERC3-204ENST00000422770 PDS5BQ9NTI5 1447 aa17.45■□□□□ 0.38
HERC3-204ENST00000422770 PRDM2Q13029 1718 aa17.44■□□□□ 0.38
HERC3-204ENST00000422770 CCDC88BA6NC98 1476 aa17.43■□□□□ 0.38
HERC3-204ENST00000422770 THOC2Q8NI27 1593 aaKnown RBP17.4■□□□□ 0.38
HERC3-204ENST00000422770 CUX2O14529 1486 aa17.38■□□□□ 0.37
HERC3-204ENST00000422770 CFTRP13569 1480 aa17.37■□□□□ 0.37
HERC3-204ENST00000422770 DNAJC5Q9H3Z4 198 aa17.35■□□□□ 0.37
HERC3-204ENST00000422770 CEP164Q9UPV0 1460 aa17.35■□□□□ 0.37
HERC3-204ENST00000422770 FANCD2Q9BXW9 1451 aa17.34■□□□□ 0.37
HERC3-204ENST00000422770 MRC2Q9UBG0 1479 aa17.3■□□□□ 0.36
HERC3-204ENST00000422770 WDR62O43379 1518 aa17.22■□□□□ 0.35
HERC3-204ENST00000422770 URB2Q14146 1524 aaKnown RBP17.16■□□□□ 0.34
HERC3-204ENST00000422770 DNMBPQ6XZF7 1577 aa17.06■□□□□ 0.32
HERC3-204ENST00000422770 TOPBP1Q92547 1522 aa17.06■□□□□ 0.32
HERC3-204ENST00000422770 ABCC8Q09428 1581 aa17.02■□□□□ 0.32
HERC3-204ENST00000422770 IFT140Q96RY7 1462 aa16.93■□□□□ 0.3
HERC3-204ENST00000422770 CUX1P39880 1505 aa16.93■□□□□ 0.3
HERC3-204ENST00000422770 POLA1P09884 1462 aaPredicted RBP16.9■□□□□ 0.3
HERC3-204ENST00000422770 FGD5Q6ZNL6 1462 aa16.89■□□□□ 0.29
HERC3-204ENST00000422770 EIF4G3O43432 1585 aaKnown RBP16.88■□□□□ 0.29
HERC3-204ENST00000422770 TARBP1Q13395 1621 aaKnown RBP16.88■□□□□ 0.29
HERC3-204ENST00000422770 ZNF608Q9ULD9 1512 aaPredicted RBP16.87■□□□□ 0.29
HERC3-204ENST00000422770 RAD54L2Q9Y4B4 1467 aa16.86■□□□□ 0.29
HERC3-204ENST00000422770 SOGA1O94964 1423 aa16.83■□□□□ 0.28
HERC3-204ENST00000422770 BIVM-ERCC5R4GMW8 1640 aa16.81■□□□□ 0.28
HERC3-204ENST00000422770 SYNJ1O43426 1573 aa16.81■□□□□ 0.28
HERC3-204ENST00000422770 WRNQ14191 1432 aaPredicted RBP eCLIP16.81■□□□□ 0.28
HERC3-204ENST00000422770 WDR97A6NE52 1622 aa16.79■□□□□ 0.28
HERC3-204ENST00000422770 TOP2BQ02880 1626 aa16.79■□□□□ 0.28
HERC3-204ENST00000422770 AQRO60306 1485 aaKnown RBP eCLIP16.79■□□□□ 0.28
HERC3-204ENST00000422770 TDRD9Q8NDG6 1382 aaKnown RBP16.75■□□□□ 0.27
HERC3-204ENST00000422770 PBRM1Q86U86 1689 aa16.74■□□□□ 0.27
HERC3-204ENST00000422770 CHD1O14646 1710 aa16.73■□□□□ 0.27
HERC3-204ENST00000422770 ABCA10Q8WWZ4 1543 aa16.67■□□□□ 0.26
HERC3-204ENST00000422770 FBLN2P98095 1184 aa16.67■□□□□ 0.26
HERC3-204ENST00000422770 ABCA5Q8WWZ7 1642 aa16.67■□□□□ 0.26
HERC3-204ENST00000422770 GAPVD1Q14C86 1478 aa16.66■□□□□ 0.26
HERC3-204ENST00000422770 SNAPC4Q5SXM2 1469 aa16.66■□□□□ 0.26
HERC3-204ENST00000422770 GRIN2BQ13224 1484 aa16.64■□□□□ 0.25
HERC3-204ENST00000422770 OSCARQ8IYS5 282 aa16.63■□□□□ 0.25
HERC3-204ENST00000422770 MAGI1Q96QZ7 1491 aaPredicted RBP16.6■□□□□ 0.25
HERC3-204ENST00000422770 CHMP7Q8WUX9 453 aaPredicted RBP16.55■□□□□ 0.24
HERC3-204ENST00000422770 SYNJ2O15056 1496 aa16.53■□□□□ 0.24
HERC3-204ENST00000422770 ADAMTS12P58397 1594 aa16.52■□□□□ 0.24
HERC3-204ENST00000422770 TRIM41Q8WV44 630 aa16.52■□□□□ 0.24
HERC3-204ENST00000422770 ERICH3Q5RHP9 1530 aa16.5■□□□□ 0.23
HERC3-204ENST00000422770 RIMBP3CA6NJZ7 1639 aa16.46■□□□□ 0.23
HERC3-204ENST00000422770 RIMBP3BA6NNM3 1639 aa16.46■□□□□ 0.23
HERC3-204ENST00000422770 RIMBP3Q9UFD9 1639 aa16.46■□□□□ 0.23
HERC3-204ENST00000422770 KIF27Q86VH2 1401 aa16.45■□□□□ 0.22
HERC3-204ENST00000422770 GRIN2AQ12879 1464 aa16.43■□□□□ 0.22
HERC3-204ENST00000422770 FHAD1B1AJZ9 1412 aa16.43■□□□□ 0.22
HERC3-204ENST00000422770 CUL7Q14999 1698 aa16.42■□□□□ 0.22
HERC3-204ENST00000422770 ARHGEF11O15085 1522 aa16.41■□□□□ 0.22
HERC3-204ENST00000422770 CLASP1Q7Z460 1538 aa16.41■□□□□ 0.22
HERC3-204ENST00000422770 CEP170Q5SW79 1584 aa16.38■□□□□ 0.21
HERC3-204ENST00000422770 IGF1RP08069 1367 aa16.32■□□□□ 0.2
HERC3-204ENST00000422770 RUSC2Q8N2Y8 1516 aa16.31■□□□□ 0.2
HERC3-204ENST00000422770 NUP160Q12769 1436 aa16.31■□□□□ 0.2
HERC3-204ENST00000422770 CARMIL1Q5VZK9 1371 aa16.28■□□□□ 0.2
HERC3-204ENST00000422770 CYB5RLQ6IPT4 315 aa16.26■□□□□ 0.19
HERC3-204ENST00000422770 ARAP1Q96P48 1450 aa16.26■□□□□ 0.19
HERC3-204ENST00000422770 SHROOM2Q13796 1616 aa16.24■□□□□ 0.19
HERC3-204ENST00000422770 ERCC6L2Q5T890 1561 aa16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms