RNA–Protein interactions for RNA: ENST00000422266.1

MDC1-204, Transcript of mediator of DNA damage checkpoint 1, humanhuman

TSL 3

Gene MDC1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDC1-204ENST00000422266 NISCHQ9Y2I1 1504 aa21.14■□□□□ 0.98
MDC1-204ENST00000422266 CCDC180Q9P1Z9 1646 aa18.9■□□□□ 0.62
MDC1-204ENST00000422266 ABCC9O60706 1549 aa18.63■□□□□ 0.57
MDC1-204ENST00000422266 RB1CC1Q8TDY2 1594 aa17.91■□□□□ 0.46
MDC1-204ENST00000422266 NACADO15069 1562 aa17.87■□□□□ 0.45
MDC1-204ENST00000422266 DCAF8L2P0C7V8 631 aa17.77■□□□□ 0.44
MDC1-204ENST00000422266 MYO15BQ96JP2 1530 aa17.73■□□□□ 0.43
MDC1-204ENST00000422266 ZCCHC6Q5VYS8 1495 aaKnown RBP17.56■□□□□ 0.4
MDC1-204ENST00000422266 DCAF1Q9Y4B6 1507 aa17.55■□□□□ 0.4
MDC1-204ENST00000422266 PABPN1Q86U42 306 aaKnown RBP eCLIP17.37■□□□□ 0.37
MDC1-204ENST00000422266 UNC13AQ9UPW8 1703 aa17.35■□□□□ 0.37
MDC1-204ENST00000422266 SHROOM4Q9ULL8 1493 aa17.26■□□□□ 0.35
MDC1-204ENST00000422266 BICRAQ9NZM4 1560 aa17.26■□□□□ 0.35
MDC1-204ENST00000422266 DNAJC5BQ9UF47 199 aa17.21■□□□□ 0.35
MDC1-204ENST00000422266 SCRIBQ14160 1630 aa17.15■□□□□ 0.34
MDC1-204ENST00000422266 EIF4G1Q04637 1599 aaKnown RBP16.89■□□□□ 0.29
MDC1-204ENST00000422266 CC2D2AQ9P2K1 1620 aa16.85■□□□□ 0.29
MDC1-204ENST00000422266 CECR2Q9BXF3 1484 aa16.8■□□□□ 0.28
MDC1-204ENST00000422266 NCAPD3P42695 1498 aa16.48■□□□□ 0.23
MDC1-204ENST00000422266 BAZ1AQ9NRL2 1556 aaPredicted RBP16.45■□□□□ 0.22
MDC1-204ENST00000422266 SMARCA2P51531 1590 aa16.44■□□□□ 0.22
MDC1-204ENST00000422266 SMARCA4P51532 1647 aa16.42■□□□□ 0.22
MDC1-204ENST00000422266 ATAD2BQ9ULI0 1458 aa16.42■□□□□ 0.22
MDC1-204ENST00000422266 HMGXB3Q12766 1538 aa16.36■□□□□ 0.21
MDC1-204ENST00000422266 PEG3Q9GZU2 1588 aa16.31■□□□□ 0.2
MDC1-204ENST00000422266 BAZ1BQ9UIG0 1483 aaKnown RBP16.29■□□□□ 0.2
MDC1-204ENST00000422266 MROH2BQ7Z745 1585 aa16.23■□□□□ 0.19
MDC1-204ENST00000422266 ERCC6Q03468 1493 aa16.16■□□□□ 0.18
MDC1-204ENST00000422266 CUX2O14529 1486 aa16.08■□□□□ 0.16
MDC1-204ENST00000422266 LAMC3Q9Y6N6 1575 aa16.08■□□□□ 0.16
MDC1-204ENST00000422266 WIZO95785 1651 aa16.03■□□□□ 0.16
MDC1-204ENST00000422266 RSF1Q96T23 1441 aaPredicted RBP16.02■□□□□ 0.16
MDC1-204ENST00000422266 PDS5BQ9NTI5 1447 aa16.02■□□□□ 0.15
MDC1-204ENST00000422266 NESP48681 1621 aa16.01■□□□□ 0.15
MDC1-204ENST00000422266 CADPSQ9ULU8 1353 aa15.99■□□□□ 0.15
MDC1-204ENST00000422266 TOP2AP11388 1531 aaKnown RBP15.93■□□□□ 0.14
MDC1-204ENST00000422266 THOC2Q8NI27 1593 aaKnown RBP15.84■□□□□ 0.13
MDC1-204ENST00000422266 CFTRP13569 1480 aa15.84■□□□□ 0.13
MDC1-204ENST00000422266 KIF21AQ7Z4S6 1674 aa15.83■□□□□ 0.12
MDC1-204ENST00000422266 MRC2Q9UBG0 1479 aa15.8■□□□□ 0.12
MDC1-204ENST00000422266 CEP164Q9UPV0 1460 aa15.79■□□□□ 0.12
MDC1-204ENST00000422266 DNAJC5Q9H3Z4 198 aa15.79■□□□□ 0.12
MDC1-204ENST00000422266 FANCD2Q9BXW9 1451 aa15.78■□□□□ 0.12
MDC1-204ENST00000422266 WDR62O43379 1518 aa15.73■□□□□ 0.11
MDC1-204ENST00000422266 CCDC88BA6NC98 1476 aa15.71■□□□□ 0.11
MDC1-204ENST00000422266 PRDM2Q13029 1718 aa15.65■□□□□ 0.1
MDC1-204ENST00000422266 ABCC8Q09428 1581 aa15.59■□□□□ 0.09
MDC1-204ENST00000422266 URB2Q14146 1524 aaKnown RBP15.57■□□□□ 0.08
MDC1-204ENST00000422266 IFT140Q96RY7 1462 aa15.49■□□□□ 0.07
MDC1-204ENST00000422266 TOPBP1Q92547 1522 aa15.48■□□□□ 0.07
MDC1-204ENST00000422266 SUPT5HO00267 1087 aaKnown RBP15.47■□□□□ 0.07
MDC1-204ENST00000422266 DNMBPQ6XZF7 1577 aa15.46■□□□□ 0.07
MDC1-204ENST00000422266 OSCARQ8IYS5 282 aa15.4■□□□□ 0.06
MDC1-204ENST00000422266 POLA1P09884 1462 aaPredicted RBP15.33■□□□□ 0.05
MDC1-204ENST00000422266 ZNF608Q9ULD9 1512 aaPredicted RBP15.33■□□□□ 0.04
MDC1-204ENST00000422266 SOGA1O94964 1423 aa15.31■□□□□ 0.04
MDC1-204ENST00000422266 TARBP1Q13395 1621 aaKnown RBP15.29■□□□□ 0.04
MDC1-204ENST00000422266 WDR97A6NE52 1622 aa15.28■□□□□ 0.04
MDC1-204ENST00000422266 EIF4G3O43432 1585 aaKnown RBP15.28■□□□□ 0.04
MDC1-204ENST00000422266 FGD5Q6ZNL6 1462 aa15.26■□□□□ 0.03
MDC1-204ENST00000422266 CUX1P39880 1505 aa15.25■□□□□ 0.03
MDC1-204ENST00000422266 AQRO60306 1485 aaKnown RBP eCLIP15.25■□□□□ 0.036e-7■■□□□ 11.9
MDC1-204ENST00000422266 RAD54L2Q9Y4B4 1467 aa15.22■□□□□ 0.03
MDC1-204ENST00000422266 TDRD9Q8NDG6 1382 aaKnown RBP15.2■□□□□ 0.02
MDC1-204ENST00000422266 WRNQ14191 1432 aaPredicted RBP eCLIP15.17■□□□□ 0.02
MDC1-204ENST00000422266 GRIN2BQ13224 1484 aa15.17■□□□□ 0.02
MDC1-204ENST00000422266 FBLN2P98095 1184 aa15.17■□□□□ 0.02
MDC1-204ENST00000422266 MAGI1Q96QZ7 1491 aaPredicted RBP15.16■□□□□ 0.02
MDC1-204ENST00000422266 TRIM41Q8WV44 630 aa15.15■□□□□ 0.02
MDC1-204ENST00000422266 ABCA10Q8WWZ4 1543 aa15.14■□□□□ 0.01
MDC1-204ENST00000422266 CHMP7Q8WUX9 453 aaPredicted RBP15.14■□□□□ 0.01
MDC1-204ENST00000422266 GAPVD1Q14C86 1478 aa15.12■□□□□ 0.01
MDC1-204ENST00000422266 SNAPC4Q5SXM2 1469 aa15.12■□□□□ 0.01
MDC1-204ENST00000422266 TOP2BQ02880 1626 aa15.11■□□□□ 0.01
MDC1-204ENST00000422266 BIVM-ERCC5R4GMW8 1640 aa15.09■□□□□ 0.01
MDC1-204ENST00000422266 CHD1O14646 1710 aa15.09■□□□□ 0.01
MDC1-204ENST00000422266 SYNJ2O15056 1496 aa15.08■□□□□ 0.01
MDC1-204ENST00000422266 ARHGEF11O15085 1522 aa15.06■□□□□ 0
MDC1-204ENST00000422266 SYNJ1O43426 1573 aa15.05■□□□□ -0
MDC1-204ENST00000422266 RIMBP3CA6NJZ7 1639 aa15.04■□□□□ -0
MDC1-204ENST00000422266 RIMBP3BA6NNM3 1639 aa15.04■□□□□ -0
MDC1-204ENST00000422266 ABCA5Q8WWZ7 1642 aa15.04■□□□□ -0
MDC1-204ENST00000422266 RIMBP3Q9UFD9 1639 aa15.04■□□□□ -0
MDC1-204ENST00000422266 PBRM1Q86U86 1689 aa15.03■□□□□ -0
MDC1-204ENST00000422266 ERICH3Q5RHP9 1530 aa14.98□□□□□ -0.01
MDC1-204ENST00000422266 FHAD1B1AJZ9 1412 aa14.97□□□□□ -0.01
MDC1-204ENST00000422266 CLASP1Q7Z460 1538 aa14.97□□□□□ -0.01
MDC1-204ENST00000422266 CYB5RLQ6IPT4 315 aa14.96□□□□□ -0.01
MDC1-204ENST00000422266 GRIN2AQ12879 1464 aa14.94□□□□□ -0.02
MDC1-204ENST00000422266 ADAMTS12P58397 1594 aa14.92□□□□□ -0.02
MDC1-204ENST00000422266 ARAP1Q96P48 1450 aa14.9□□□□□ -0.02
MDC1-204ENST00000422266 KIF27Q86VH2 1401 aa14.9□□□□□ -0.02
MDC1-204ENST00000422266 NUP160Q12769 1436 aa14.89□□□□□ -0.03
MDC1-204ENST00000422266 CEP170Q5SW79 1584 aa14.81□□□□□ -0.04
MDC1-204ENST00000422266 IGF1RP08069 1367 aa14.81□□□□□ -0.04
MDC1-204ENST00000422266 CUL7Q14999 1698 aa14.79□□□□□ -0.04
MDC1-204ENST00000422266 JPH4Q96JJ6 628 aa14.77□□□□□ -0.05
MDC1-204ENST00000422266 TRHP20396 242 aaPredicted RBP14.76□□□□□ -0.05
MDC1-204ENST00000422266 SHROOM2Q13796 1616 aa14.76□□□□□ -0.05
MDC1-204ENST00000422266 CARMIL1Q5VZK9 1371 aa14.74□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms