RNA–Protein interactions for RNA: ENST00000421517.5

FAM3A-209, Transcript of family with sequence similarity 3 member A, humanhuman

TSL 3

Gene FAM3A, Length 853 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FAM3A-209ENST00000421517 NISCHQ9Y2I1 1504 aa36.24■■■■□ 3.39
FAM3A-209ENST00000421517 CCDC180Q9P1Z9 1646 aa32.31■■■□□ 2.76
FAM3A-209ENST00000421517 ABCC9O60706 1549 aa31.53■■■□□ 2.64
FAM3A-209ENST00000421517 RB1CC1Q8TDY2 1594 aa30.45■■■□□ 2.46
FAM3A-209ENST00000421517 NACADO15069 1562 aa30.44■■■□□ 2.46
FAM3A-209ENST00000421517 MYO15BQ96JP2 1530 aa30.36■■■□□ 2.45
FAM3A-209ENST00000421517 ZCCHC6Q5VYS8 1495 aaKnown RBP30.17■■■□□ 2.42
FAM3A-209ENST00000421517 DCAF1Q9Y4B6 1507 aa30.12■■■□□ 2.41
FAM3A-209ENST00000421517 DCAF8L2P0C7V8 631 aa30.09■■■□□ 2.41
FAM3A-209ENST00000421517 UNC13AQ9UPW8 1703 aa29.6■■■□□ 2.33
FAM3A-209ENST00000421517 BICRAQ9NZM4 1560 aa29.47■■■□□ 2.31
FAM3A-209ENST00000421517 PABPN1Q86U42 306 aaKnown RBP eCLIP29.41■■■□□ 2.3
FAM3A-209ENST00000421517 SHROOM4Q9ULL8 1493 aa29.4■■■□□ 2.3
FAM3A-209ENST00000421517 SCRIBQ14160 1630 aa29.27■■■□□ 2.28
FAM3A-209ENST00000421517 DNAJC5BQ9UF47 199 aa29.06■■■□□ 2.24
FAM3A-209ENST00000421517 EIF4G1Q04637 1599 aaKnown RBP28.72■■■□□ 2.19
FAM3A-209ENST00000421517 CC2D2AQ9P2K1 1620 aa28.58■■■□□ 2.17
FAM3A-209ENST00000421517 CECR2Q9BXF3 1484 aa28.43■■■□□ 2.14
FAM3A-209ENST00000421517 BAZ1AQ9NRL2 1556 aaPredicted RBP28.11■■■□□ 2.09
FAM3A-209ENST00000421517 SMARCA4P51532 1647 aa28.1■■■□□ 2.09
FAM3A-209ENST00000421517 NCAPD3P42695 1498 aa28.1■■■□□ 2.09
FAM3A-209ENST00000421517 SMARCA2P51531 1590 aa28.02■■■□□ 2.08
FAM3A-209ENST00000421517 ATAD2BQ9ULI0 1458 aa28.02■■■□□ 2.08
FAM3A-209ENST00000421517 PEG3Q9GZU2 1588 aa27.96■■■□□ 2.07
FAM3A-209ENST00000421517 HMGXB3Q12766 1538 aa27.93■■■□□ 2.06
FAM3A-209ENST00000421517 MROH2BQ7Z745 1585 aa27.84■■■□□ 2.05
FAM3A-209ENST00000421517 BAZ1BQ9UIG0 1483 aaKnown RBP27.75■■■□□ 2.03
FAM3A-209ENST00000421517 RSF1Q96T23 1441 aaPredicted RBP27.54■■■□□ 2
FAM3A-209ENST00000421517 WIZO95785 1651 aa27.49■■□□□ 1.99
FAM3A-209ENST00000421517 LAMC3Q9Y6N6 1575 aa27.35■■□□□ 1.97
FAM3A-209ENST00000421517 TOP2AP11388 1531 aaKnown RBP27.3■■□□□ 1.96
FAM3A-209ENST00000421517 NESP48681 1621 aa27.24■■□□□ 1.95
FAM3A-209ENST00000421517 ERCC6Q03468 1493 aa27.24■■□□□ 1.95
FAM3A-209ENST00000421517 CADPSQ9ULU8 1353 aa27.22■■□□□ 1.95
FAM3A-209ENST00000421517 PDS5BQ9NTI5 1447 aa27.16■■□□□ 1.94
FAM3A-209ENST00000421517 CUX2O14529 1486 aa27.14■■□□□ 1.94
FAM3A-209ENST00000421517 CFTRP13569 1480 aa27.06■■□□□ 1.92
FAM3A-209ENST00000421517 THOC2Q8NI27 1593 aaKnown RBP26.95■■□□□ 1.9
FAM3A-209ENST00000421517 CCDC88BA6NC98 1476 aa26.94■■□□□ 1.9
FAM3A-209ENST00000421517 KIF21AQ7Z4S6 1674 aa26.92■■□□□ 1.9
FAM3A-209ENST00000421517 FANCD2Q9BXW9 1451 aa26.85■■□□□ 1.89
FAM3A-209ENST00000421517 MRC2Q9UBG0 1479 aa26.84■■□□□ 1.89
FAM3A-209ENST00000421517 CEP164Q9UPV0 1460 aa26.84■■□□□ 1.89
FAM3A-209ENST00000421517 WDR62O43379 1518 aa26.78■■□□□ 1.88
FAM3A-209ENST00000421517 PRDM2Q13029 1718 aa26.76■■□□□ 1.87
FAM3A-209ENST00000421517 URB2Q14146 1524 aaKnown RBP26.56■■□□□ 1.84
FAM3A-209ENST00000421517 ABCC8Q09428 1581 aa26.55■■□□□ 1.84
FAM3A-209ENST00000421517 SUPT5HO00267 1087 aaKnown RBP26.55■■□□□ 1.84
FAM3A-209ENST00000421517 TOPBP1Q92547 1522 aa26.41■■□□□ 1.82
FAM3A-209ENST00000421517 DNAJC5Q9H3Z4 198 aa26.4■■□□□ 1.82
FAM3A-209ENST00000421517 DNMBPQ6XZF7 1577 aa26.39■■□□□ 1.82
FAM3A-209ENST00000421517 IFT140Q96RY7 1462 aa26.33■■□□□ 1.81
FAM3A-209ENST00000421517 POLA1P09884 1462 aaPredicted RBP26.18■■□□□ 1.78
FAM3A-209ENST00000421517 TARBP1Q13395 1621 aaKnown RBP26.14■■□□□ 1.78
FAM3A-209ENST00000421517 CUX1P39880 1505 aa26.14■■□□□ 1.77
FAM3A-209ENST00000421517 ZNF608Q9ULD9 1512 aaPredicted RBP26.09■■□□□ 1.77
FAM3A-209ENST00000421517 WDR97A6NE52 1622 aa26.09■■□□□ 1.77
FAM3A-209ENST00000421517 SOGA1O94964 1423 aa26.07■■□□□ 1.76
FAM3A-209ENST00000421517 FGD5Q6ZNL6 1462 aa26.06■■□□□ 1.76
FAM3A-209ENST00000421517 EIF4G3O43432 1585 aaKnown RBP26.02■■□□□ 1.76
FAM3A-209ENST00000421517 RAD54L2Q9Y4B4 1467 aa25.98■■□□□ 1.75
FAM3A-209ENST00000421517 WRNQ14191 1432 aaPredicted RBP eCLIP25.97■■□□□ 1.75
FAM3A-209ENST00000421517 AQRO60306 1485 aaKnown RBP eCLIP25.94■■□□□ 1.744e-7■■■□□ 15.7
FAM3A-209ENST00000421517 OSCARQ8IYS5 282 aa25.94■■□□□ 1.74
FAM3A-209ENST00000421517 TOP2BQ02880 1626 aa25.94■■□□□ 1.74
FAM3A-209ENST00000421517 BIVM-ERCC5R4GMW8 1640 aa25.93■■□□□ 1.74
FAM3A-209ENST00000421517 ABCA10Q8WWZ4 1543 aa25.9■■□□□ 1.74
FAM3A-209ENST00000421517 TDRD9Q8NDG6 1382 aaKnown RBP25.87■■□□□ 1.73
FAM3A-209ENST00000421517 SYNJ1O43426 1573 aa25.82■■□□□ 1.72
FAM3A-209ENST00000421517 GRIN2BQ13224 1484 aa25.82■■□□□ 1.72
FAM3A-209ENST00000421517 MAGI1Q96QZ7 1491 aaPredicted RBP25.79■■□□□ 1.72
FAM3A-209ENST00000421517 GAPVD1Q14C86 1478 aa25.78■■□□□ 1.72
FAM3A-209ENST00000421517 ABCA5Q8WWZ7 1642 aa25.75■■□□□ 1.71
FAM3A-209ENST00000421517 SNAPC4Q5SXM2 1469 aa25.72■■□□□ 1.71
FAM3A-209ENST00000421517 SYNJ2O15056 1496 aa25.67■■□□□ 1.7
FAM3A-209ENST00000421517 PBRM1Q86U86 1689 aa25.65■■□□□ 1.7
FAM3A-209ENST00000421517 CHD1O14646 1710 aa25.65■■□□□ 1.7
FAM3A-209ENST00000421517 CHMP7Q8WUX9 453 aaPredicted RBP25.61■■□□□ 1.69
FAM3A-209ENST00000421517 ERICH3Q5RHP9 1530 aa25.61■■□□□ 1.69
FAM3A-209ENST00000421517 FBLN2P98095 1184 aa25.58■■□□□ 1.69
FAM3A-209ENST00000421517 FHAD1B1AJZ9 1412 aa25.52■■□□□ 1.68
FAM3A-209ENST00000421517 ADAMTS12P58397 1594 aa25.49■■□□□ 1.67
FAM3A-209ENST00000421517 CLASP1Q7Z460 1538 aa25.49■■□□□ 1.67
FAM3A-209ENST00000421517 ARHGEF11O15085 1522 aa25.47■■□□□ 1.67
FAM3A-209ENST00000421517 GRIN2AQ12879 1464 aa25.47■■□□□ 1.67
FAM3A-209ENST00000421517 KIF27Q86VH2 1401 aa25.46■■□□□ 1.67
FAM3A-209ENST00000421517 RIMBP3CA6NJZ7 1639 aa25.45■■□□□ 1.66
FAM3A-209ENST00000421517 RIMBP3BA6NNM3 1639 aa25.45■■□□□ 1.66
FAM3A-209ENST00000421517 RIMBP3Q9UFD9 1639 aa25.45■■□□□ 1.66
FAM3A-209ENST00000421517 NUP160Q12769 1436 aa25.4■■□□□ 1.66
FAM3A-209ENST00000421517 IGF1RP08069 1367 aa25.37■■□□□ 1.65
FAM3A-209ENST00000421517 CUL7Q14999 1698 aa25.31■■□□□ 1.64
FAM3A-209ENST00000421517 CEP170Q5SW79 1584 aa25.28■■□□□ 1.64
FAM3A-209ENST00000421517 TRIM41Q8WV44 630 aa25.26■■□□□ 1.63
FAM3A-209ENST00000421517 ARAP1Q96P48 1450 aa25.23■■□□□ 1.63
FAM3A-209ENST00000421517 SHROOM2Q13796 1616 aa25.2■■□□□ 1.62
FAM3A-209ENST00000421517 CARMIL1Q5VZK9 1371 aa25.19■■□□□ 1.62
FAM3A-209ENST00000421517 CYB5RLQ6IPT4 315 aa25.18■■□□□ 1.62
FAM3A-209ENST00000421517 KIAA0586Q9BVV6 1533 aa25.13■■□□□ 1.61
FAM3A-209ENST00000421517 RUSC2Q8N2Y8 1516 aa25.12■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 238 ms