RNA–Protein interactions for RNA: ENST00000420042.1

RARA-205, Transcript of retinoic acid receptor alpha, humanhuman

TSL 3

Gene RARA, Length 1,052 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RARA-205ENST00000420042 NISCHQ9Y2I1 1504 aa37.41■■■■□ 3.58
RARA-205ENST00000420042 CCDC180Q9P1Z9 1646 aa33.42■■■□□ 2.94
RARA-205ENST00000420042 ABCC9O60706 1549 aa33.31■■■□□ 2.92
RARA-205ENST00000420042 RB1CC1Q8TDY2 1594 aa31.78■■■□□ 2.68
RARA-205ENST00000420042 DCAF8L2P0C7V8 631 aa31.63■■■□□ 2.65
RARA-205ENST00000420042 NACADO15069 1562 aa31.6■■■□□ 2.65
RARA-205ENST00000420042 MYO15BQ96JP2 1530 aa31.22■■■□□ 2.59
RARA-205ENST00000420042 PABPN1Q86U42 306 aaKnown RBP eCLIP31.09■■■□□ 2.57
RARA-205ENST00000420042 DNAJC5BQ9UF47 199 aa31.06■■■□□ 2.56
RARA-205ENST00000420042 ZCCHC6Q5VYS8 1495 aaKnown RBP31.02■■■□□ 2.56
RARA-205ENST00000420042 UNC13AQ9UPW8 1703 aa30.94■■■□□ 2.54
RARA-205ENST00000420042 DCAF1Q9Y4B6 1507 aa30.89■■■□□ 2.54
RARA-205ENST00000420042 BICRAQ9NZM4 1560 aa30.79■■■□□ 2.52
RARA-205ENST00000420042 SCRIBQ14160 1630 aa30.51■■■□□ 2.48
RARA-205ENST00000420042 SHROOM4Q9ULL8 1493 aa30.44■■■□□ 2.46
RARA-205ENST00000420042 CC2D2AQ9P2K1 1620 aa30.06■■■□□ 2.4
RARA-205ENST00000420042 EIF4G1Q04637 1599 aaKnown RBP30.06■■■□□ 2.4
RARA-205ENST00000420042 CECR2Q9BXF3 1484 aa29.99■■■□□ 2.39
RARA-205ENST00000420042 NCAPD3P42695 1498 aa29.19■■■□□ 2.26
RARA-205ENST00000420042 ATAD2BQ9ULI0 1458 aa29.11■■■□□ 2.25
RARA-205ENST00000420042 SMARCA4P51532 1647 aa29.11■■■□□ 2.25
RARA-205ENST00000420042 SMARCA2P51531 1590 aa29.06■■■□□ 2.24
RARA-205ENST00000420042 BAZ1AQ9NRL2 1556 aaPredicted RBP29.04■■■□□ 2.24
RARA-205ENST00000420042 HMGXB3Q12766 1538 aa28.96■■■□□ 2.23
RARA-205ENST00000420042 BAZ1BQ9UIG0 1483 aaKnown RBP28.87■■■□□ 2.21
RARA-205ENST00000420042 MROH2BQ7Z745 1585 aa28.82■■■□□ 2.2
RARA-205ENST00000420042 PEG3Q9GZU2 1588 aa28.81■■■□□ 2.2
RARA-205ENST00000420042 ERCC6Q03468 1493 aa28.79■■■□□ 2.2
RARA-205ENST00000420042 NESP48681 1621 aa28.65■■■□□ 2.18
RARA-205ENST00000420042 CUX2O14529 1486 aa28.63■■■□□ 2.17
RARA-205ENST00000420042 LAMC3Q9Y6N6 1575 aa28.48■■■□□ 2.15
RARA-205ENST00000420042 WIZO95785 1651 aa28.46■■■□□ 2.15
RARA-205ENST00000420042 DNAJC5Q9H3Z4 198 aa28.42■■■□□ 2.14
RARA-205ENST00000420042 PDS5BQ9NTI5 1447 aa28.37■■■□□ 2.13
RARA-205ENST00000420042 CADPSQ9ULU8 1353 aa28.34■■■□□ 2.13
RARA-205ENST00000420042 RSF1Q96T23 1441 aaPredicted RBP28.32■■■□□ 2.12
RARA-205ENST00000420042 THOC2Q8NI27 1593 aaKnown RBP28.27■■■□□ 2.12
RARA-205ENST00000420042 KIF21AQ7Z4S6 1674 aa28.23■■■□□ 2.11
RARA-205ENST00000420042 TOP2AP11388 1531 aaKnown RBP28.14■■■□□ 2.1
RARA-205ENST00000420042 MRC2Q9UBG0 1479 aa28.08■■■□□ 2.09
RARA-205ENST00000420042 CFTRP13569 1480 aa28.03■■■□□ 2.08
RARA-205ENST00000420042 CEP164Q9UPV0 1460 aa28.02■■■□□ 2.08
RARA-205ENST00000420042 FANCD2Q9BXW9 1451 aa28■■■□□ 2.07
RARA-205ENST00000420042 WDR62O43379 1518 aa27.97■■■□□ 2.07
RARA-205ENST00000420042 CCDC88BA6NC98 1476 aa27.83■■■□□ 2.05
RARA-205ENST00000420042 URB2Q14146 1524 aaKnown RBP27.72■■■□□ 2.03
RARA-205ENST00000420042 PRDM2Q13029 1718 aa27.67■■■□□ 2.02
RARA-205ENST00000420042 TOPBP1Q92547 1522 aa27.47■■□□□ 1.99
RARA-205ENST00000420042 ABCC8Q09428 1581 aa27.47■■□□□ 1.99
RARA-205ENST00000420042 IFT140Q96RY7 1462 aa27.45■■□□□ 1.99
RARA-205ENST00000420042 OSCARQ8IYS5 282 aa27.43■■□□□ 1.98
RARA-205ENST00000420042 DNMBPQ6XZF7 1577 aa27.38■■□□□ 1.97
RARA-205ENST00000420042 ZNF608Q9ULD9 1512 aaPredicted RBP27.36■■□□□ 1.97
RARA-205ENST00000420042 SUPT5HO00267 1087 aaKnown RBP27.31■■□□□ 1.96
RARA-205ENST00000420042 TRIM41Q8WV44 630 aa27.29■■□□□ 1.96
RARA-205ENST00000420042 POLA1P09884 1462 aaPredicted RBP27.21■■□□□ 1.95
RARA-205ENST00000420042 EIF4G3O43432 1585 aaKnown RBP27.19■■□□□ 1.94
RARA-205ENST00000420042 TARBP1Q13395 1621 aaKnown RBP27.17■■□□□ 1.94
RARA-205ENST00000420042 AQRO60306 1485 aaKnown RBP eCLIP27.17■■□□□ 1.944e-7■■■■□ 24.2
RARA-205ENST00000420042 SOGA1O94964 1423 aa27.13■■□□□ 1.93
RARA-205ENST00000420042 RAD54L2Q9Y4B4 1467 aa27.12■■□□□ 1.93
RARA-205ENST00000420042 FGD5Q6ZNL6 1462 aa27.07■■□□□ 1.92
RARA-205ENST00000420042 CUX1P39880 1505 aa27.06■■□□□ 1.92
RARA-205ENST00000420042 TDRD9Q8NDG6 1382 aaKnown RBP27.05■■□□□ 1.92
RARA-205ENST00000420042 FBLN2P98095 1184 aa27.03■■□□□ 1.92
RARA-205ENST00000420042 WDR97A6NE52 1622 aa26.94■■□□□ 1.9
RARA-205ENST00000420042 RIMBP3CA6NJZ7 1639 aa26.94■■□□□ 1.9
RARA-205ENST00000420042 RIMBP3BA6NNM3 1639 aa26.94■■□□□ 1.9
RARA-205ENST00000420042 RIMBP3Q9UFD9 1639 aa26.94■■□□□ 1.9
RARA-205ENST00000420042 CHD1O14646 1710 aa26.93■■□□□ 1.9
RARA-205ENST00000420042 ARHGEF11O15085 1522 aa26.9■■□□□ 1.9
RARA-205ENST00000420042 SNAPC4Q5SXM2 1469 aa26.88■■□□□ 1.89
RARA-205ENST00000420042 CHMP7Q8WUX9 453 aaPredicted RBP26.86■■□□□ 1.89
RARA-205ENST00000420042 GRIN2BQ13224 1484 aa26.86■■□□□ 1.89
RARA-205ENST00000420042 MAGI1Q96QZ7 1491 aaPredicted RBP26.82■■□□□ 1.88
RARA-205ENST00000420042 GAPVD1Q14C86 1478 aa26.79■■□□□ 1.88
RARA-205ENST00000420042 ABCA10Q8WWZ4 1543 aa26.77■■□□□ 1.88
RARA-205ENST00000420042 CYB5RLQ6IPT4 315 aa26.77■■□□□ 1.88
RARA-205ENST00000420042 WRNQ14191 1432 aaPredicted RBP eCLIP26.75■■□□□ 1.87
RARA-205ENST00000420042 SYNJ2O15056 1496 aa26.74■■□□□ 1.87
RARA-205ENST00000420042 SYNJ1O43426 1573 aa26.7■■□□□ 1.86
RARA-205ENST00000420042 PBRM1Q86U86 1689 aa26.68■■□□□ 1.86
RARA-205ENST00000420042 TOP2BQ02880 1626 aa26.68■■□□□ 1.86
RARA-205ENST00000420042 ABCA5Q8WWZ7 1642 aa26.67■■□□□ 1.86
RARA-205ENST00000420042 BIVM-ERCC5R4GMW8 1640 aa26.65■■□□□ 1.86
RARA-205ENST00000420042 CLASP1Q7Z460 1538 aa26.65■■□□□ 1.86
RARA-205ENST00000420042 ARAP1Q96P48 1450 aa26.64■■□□□ 1.86
RARA-205ENST00000420042 GRIN2AQ12879 1464 aa26.49■■□□□ 1.83
RARA-205ENST00000420042 FHAD1B1AJZ9 1412 aa26.47■■□□□ 1.83
RARA-205ENST00000420042 ADAMTS12P58397 1594 aa26.46■■□□□ 1.83
RARA-205ENST00000420042 ERICH3Q5RHP9 1530 aa26.44■■□□□ 1.82
RARA-205ENST00000420042 TRHP20396 242 aaPredicted RBP26.44■■□□□ 1.82
RARA-205ENST00000420042 NUP160Q12769 1436 aa26.39■■□□□ 1.81
RARA-205ENST00000420042 CEP170Q5SW79 1584 aa26.36■■□□□ 1.81
RARA-205ENST00000420042 ERCC6L2Q5T890 1561 aa26.24■■□□□ 1.79
RARA-205ENST00000420042 KIF27Q86VH2 1401 aa26.23■■□□□ 1.79
RARA-205ENST00000420042 SHROOM2Q13796 1616 aa26.21■■□□□ 1.79
RARA-205ENST00000420042 JPH4Q96JJ6 628 aa26.19■■□□□ 1.78
RARA-205ENST00000420042 IGF1RP08069 1367 aa26.18■■□□□ 1.78
RARA-205ENST00000420042 PRG4Q92954 1404 aaPredicted RBP26.16■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms