RNA–Protein interactions for RNA: ENST00000420013.5

MCF2L-212, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 4

Gene MCF2L, Length 566 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-212ENST00000420013 NISCHQ9Y2I1 1504 aa51.01■■■■■ 5.76
MCF2L-212ENST00000420013 CCDC180Q9P1Z9 1646 aa45.89■■■■■ 4.94
MCF2L-212ENST00000420013 ABCC9O60706 1549 aa45.32■■■■■ 4.85
MCF2L-212ENST00000420013 RB1CC1Q8TDY2 1594 aa43.46■■■■■ 4.55
MCF2L-212ENST00000420013 NACADO15069 1562 aa43.21■■■■■ 4.51
MCF2L-212ENST00000420013 MYO15BQ96JP2 1530 aa42.77■■■■■ 4.44
MCF2L-212ENST00000420013 DCAF8L2P0C7V8 631 aa42.58■■■■■ 4.41
MCF2L-212ENST00000420013 UNC13AQ9UPW8 1703 aa42.5■■■■■ 4.39
MCF2L-212ENST00000420013 ZCCHC6Q5VYS8 1495 aaKnown RBP42.39■■■■■ 4.38
MCF2L-212ENST00000420013 DCAF1Q9Y4B6 1507 aa42.29■■■■■ 4.36
MCF2L-212ENST00000420013 BICRAQ9NZM4 1560 aa42.1■■■■■ 4.33
MCF2L-212ENST00000420013 DNAJC5BQ9UF47 199 aa42.1■■■■■ 4.33
MCF2L-212ENST00000420013 PABPN1Q86U42 306 aaKnown RBP eCLIP42.06■■■■■ 4.321e-7■□□□□ 10
MCF2L-212ENST00000420013 SHROOM4Q9ULL8 1493 aa41.79■■■■■ 4.28
MCF2L-212ENST00000420013 SCRIBQ14160 1630 aa41.62■■■■■ 4.25
MCF2L-212ENST00000420013 EIF4G1Q04637 1599 aaKnown RBP41.08■■■■■ 4.17
MCF2L-212ENST00000420013 CC2D2AQ9P2K1 1620 aa41.07■■■■■ 4.16
MCF2L-212ENST00000420013 CECR2Q9BXF3 1484 aa40.86■■■■■ 4.13
MCF2L-212ENST00000420013 SMARCA4P51532 1647 aa39.8■■■■□ 3.96
MCF2L-212ENST00000420013 NCAPD3P42695 1498 aa39.8■■■■□ 3.96
MCF2L-212ENST00000420013 SMARCA2P51531 1590 aa39.72■■■■□ 3.95
MCF2L-212ENST00000420013 ATAD2BQ9ULI0 1458 aa39.68■■■■□ 3.94
MCF2L-212ENST00000420013 HMGXB3Q12766 1538 aa39.66■■■■□ 3.94
MCF2L-212ENST00000420013 BAZ1AQ9NRL2 1556 aaPredicted RBP39.66■■■■□ 3.94
MCF2L-212ENST00000420013 PEG3Q9GZU2 1588 aa39.48■■■■□ 3.91
MCF2L-212ENST00000420013 BAZ1BQ9UIG0 1483 aaKnown RBP39.36■■■■□ 3.89
MCF2L-212ENST00000420013 MROH2BQ7Z745 1585 aa39.24■■■■□ 3.87
MCF2L-212ENST00000420013 ERCC6Q03468 1493 aa39.19■■■■□ 3.86
MCF2L-212ENST00000420013 CUX2O14529 1486 aa39.16■■■■□ 3.86
MCF2L-212ENST00000420013 NESP48681 1621 aa38.99■■■■□ 3.83
MCF2L-212ENST00000420013 LAMC3Q9Y6N6 1575 aa38.99■■■■□ 3.83
MCF2L-212ENST00000420013 WIZO95785 1651 aa38.81■■■■□ 3.8
MCF2L-212ENST00000420013 THOC2Q8NI27 1593 aaKnown RBP38.76■■■■□ 3.8
MCF2L-212ENST00000420013 KIF21AQ7Z4S6 1674 aa38.68■■■■□ 3.78
MCF2L-212ENST00000420013 PDS5BQ9NTI5 1447 aa38.64■■■■□ 3.78
MCF2L-212ENST00000420013 DNAJC5Q9H3Z4 198 aa38.62■■■■□ 3.77
MCF2L-212ENST00000420013 CADPSQ9ULU8 1353 aa38.55■■■■□ 3.76
MCF2L-212ENST00000420013 RSF1Q96T23 1441 aaPredicted RBP38.49■■■■□ 3.75
MCF2L-212ENST00000420013 TOP2AP11388 1531 aaKnown RBP38.43■■■■□ 3.74
MCF2L-212ENST00000420013 MRC2Q9UBG0 1479 aa38.32■■■■□ 3.72
MCF2L-212ENST00000420013 WDR62O43379 1518 aa38.27■■■■□ 3.72
MCF2L-212ENST00000420013 CEP164Q9UPV0 1460 aa38.22■■■■□ 3.71
MCF2L-212ENST00000420013 CFTRP13569 1480 aa38.22■■■■□ 3.71
MCF2L-212ENST00000420013 FANCD2Q9BXW9 1451 aa38.15■■■■□ 3.7
MCF2L-212ENST00000420013 PRDM2Q13029 1718 aa38.1■■■■□ 3.69
MCF2L-212ENST00000420013 CCDC88BA6NC98 1476 aa37.84■■■■□ 3.65
MCF2L-212ENST00000420013 URB2Q14146 1524 aaKnown RBP37.81■■■■□ 3.64
MCF2L-212ENST00000420013 ABCC8Q09428 1581 aa37.48■■■■□ 3.59
MCF2L-212ENST00000420013 TOPBP1Q92547 1522 aa37.46■■■■□ 3.59
MCF2L-212ENST00000420013 IFT140Q96RY7 1462 aa37.45■■■■□ 3.59
MCF2L-212ENST00000420013 DNMBPQ6XZF7 1577 aa37.43■■■■□ 3.58
MCF2L-212ENST00000420013 ZNF608Q9ULD9 1512 aaPredicted RBP37.24■■■■□ 3.55
MCF2L-212ENST00000420013 EIF4G3O43432 1585 aaKnown RBP37.22■■■■□ 3.55
MCF2L-212ENST00000420013 OSCARQ8IYS5 282 aa37.17■■■■□ 3.54
MCF2L-212ENST00000420013 TARBP1Q13395 1621 aaKnown RBP37.17■■■■□ 3.54
MCF2L-212ENST00000420013 POLA1P09884 1462 aaPredicted RBP37.1■■■■□ 3.53
MCF2L-212ENST00000420013 WDR97A6NE52 1622 aa36.99■■■■□ 3.51
MCF2L-212ENST00000420013 TRIM41Q8WV44 630 aa36.93■■■■□ 3.5
MCF2L-212ENST00000420013 CHD1O14646 1710 aa36.9■■■■□ 3.5
MCF2L-212ENST00000420013 CUX1P39880 1505 aa36.89■■■■□ 3.5
MCF2L-212ENST00000420013 AQRO60306 1485 aaKnown RBP eCLIP36.88■■■■□ 3.5
MCF2L-212ENST00000420013 FGD5Q6ZNL6 1462 aa36.88■■■■□ 3.5
MCF2L-212ENST00000420013 RIMBP3CA6NJZ7 1639 aa36.85■■■■□ 3.49
MCF2L-212ENST00000420013 RIMBP3BA6NNM3 1639 aa36.85■■■■□ 3.49
MCF2L-212ENST00000420013 RIMBP3Q9UFD9 1639 aa36.85■■■■□ 3.49
MCF2L-212ENST00000420013 SOGA1O94964 1423 aa36.85■■■■□ 3.49
MCF2L-212ENST00000420013 RAD54L2Q9Y4B4 1467 aa36.84■■■■□ 3.49
MCF2L-212ENST00000420013 ARHGEF11O15085 1522 aa36.74■■■■□ 3.47
MCF2L-212ENST00000420013 SUPT5HO00267 1087 aaKnown RBP36.73■■■■□ 3.47
MCF2L-212ENST00000420013 TDRD9Q8NDG6 1382 aaKnown RBP36.67■■■■□ 3.46
MCF2L-212ENST00000420013 SNAPC4Q5SXM2 1469 aa36.64■■■■□ 3.46
MCF2L-212ENST00000420013 MAGI1Q96QZ7 1491 aaPredicted RBP36.64■■■■□ 3.46
MCF2L-212ENST00000420013 GRIN2BQ13224 1484 aa36.61■■■■□ 3.45
MCF2L-212ENST00000420013 PBRM1Q86U86 1689 aa36.59■■■■□ 3.45
MCF2L-212ENST00000420013 ABCA10Q8WWZ4 1543 aa36.54■■■■□ 3.44
MCF2L-212ENST00000420013 ABCA5Q8WWZ7 1642 aa36.52■■■■□ 3.44
MCF2L-212ENST00000420013 SYNJ1O43426 1573 aa36.5■■■■□ 3.43
MCF2L-212ENST00000420013 BIVM-ERCC5R4GMW8 1640 aa36.5■■■■□ 3.43
MCF2L-212ENST00000420013 FBLN2P98095 1184 aa36.5■■■■□ 3.43
MCF2L-212ENST00000420013 CLASP1Q7Z460 1538 aa36.48■■■■□ 3.43
MCF2L-212ENST00000420013 SYNJ2O15056 1496 aa36.47■■■■□ 3.43
MCF2L-212ENST00000420013 GAPVD1Q14C86 1478 aa36.47■■■■□ 3.43
MCF2L-212ENST00000420013 TOP2BQ02880 1626 aa36.45■■■■□ 3.42
MCF2L-212ENST00000420013 WRNQ14191 1432 aaPredicted RBP eCLIP36.38■■■■□ 3.41
MCF2L-212ENST00000420013 ARAP1Q96P48 1450 aa36.37■■■■□ 3.41
MCF2L-212ENST00000420013 CHMP7Q8WUX9 453 aaPredicted RBP36.35■■■■□ 3.41
MCF2L-212ENST00000420013 ADAMTS12P58397 1594 aa36.23■■■■□ 3.39
MCF2L-212ENST00000420013 CYB5RLQ6IPT4 315 aa36.21■■■■□ 3.39
MCF2L-212ENST00000420013 GRIN2AQ12879 1464 aa36.14■■■■□ 3.38
MCF2L-212ENST00000420013 ERICH3Q5RHP9 1530 aa36.13■■■■□ 3.37
MCF2L-212ENST00000420013 FHAD1B1AJZ9 1412 aa36.04■■■■□ 3.36
MCF2L-212ENST00000420013 NUP160Q12769 1436 aa36.01■■■■□ 3.36
MCF2L-212ENST00000420013 CEP170Q5SW79 1584 aa36■■■■□ 3.35
MCF2L-212ENST00000420013 SHROOM2Q13796 1616 aa35.91■■■■□ 3.34
MCF2L-212ENST00000420013 ERCC6L2Q5T890 1561 aa35.78■■■■□ 3.32
MCF2L-212ENST00000420013 TRHP20396 242 aaPredicted RBP35.74■■■■□ 3.31
MCF2L-212ENST00000420013 RUSC2Q8N2Y8 1516 aa35.73■■■■□ 3.31
MCF2L-212ENST00000420013 CUL7Q14999 1698 aa35.72■■■■□ 3.31
MCF2L-212ENST00000420013 KIF27Q86VH2 1401 aa35.66■■■■□ 3.3
MCF2L-212ENST00000420013 PRG4Q92954 1404 aaPredicted RBP35.55■■■■□ 3.28
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms