RNA–Protein interactions for RNA: ENST00000419981.1

PTCD1-202, Transcript of pentatricopeptide repeat domain 1, humanhuman

TSL 4

Gene PTCD1, Length 533 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1-202ENST00000419981 NISCHQ9Y2I1 1504 aa43.35■■■■■ 4.53
PTCD1-202ENST00000419981 CCDC180Q9P1Z9 1646 aa39.04■■■■□ 3.84
PTCD1-202ENST00000419981 ABCC9O60706 1549 aa38.75■■■■□ 3.79
PTCD1-202ENST00000419981 RB1CC1Q8TDY2 1594 aa37.03■■■■□ 3.52
PTCD1-202ENST00000419981 NACADO15069 1562 aa36.77■■■■□ 3.48
PTCD1-202ENST00000419981 DCAF8L2P0C7V8 631 aa36.43■■■■□ 3.42
PTCD1-202ENST00000419981 UNC13AQ9UPW8 1703 aa36.39■■■■□ 3.42
PTCD1-202ENST00000419981 MYO15BQ96JP2 1530 aa36.27■■■■□ 3.4
PTCD1-202ENST00000419981 DNAJC5BQ9UF47 199 aa36.14■■■■□ 3.38
PTCD1-202ENST00000419981 PABPN1Q86U42 306 aaKnown RBP eCLIP35.99■■■■□ 3.35
PTCD1-202ENST00000419981 ZCCHC6Q5VYS8 1495 aaKnown RBP35.96■■■■□ 3.35
PTCD1-202ENST00000419981 BICRAQ9NZM4 1560 aa35.92■■■■□ 3.34
PTCD1-202ENST00000419981 DCAF1Q9Y4B6 1507 aa35.84■■■■□ 3.33
PTCD1-202ENST00000419981 SCRIBQ14160 1630 aa35.5■■■■□ 3.27
PTCD1-202ENST00000419981 SHROOM4Q9ULL8 1493 aa35.44■■■■□ 3.26
PTCD1-202ENST00000419981 CC2D2AQ9P2K1 1620 aa35.1■■■■□ 3.21
PTCD1-202ENST00000419981 EIF4G1Q04637 1599 aaKnown RBP35.03■■■■□ 3.2
PTCD1-202ENST00000419981 CECR2Q9BXF3 1484 aa34.9■■■■□ 3.18
PTCD1-202ENST00000419981 SMARCA4P51532 1647 aa33.88■■■■□ 3.01
PTCD1-202ENST00000419981 NCAPD3P42695 1498 aa33.85■■■■□ 3.01
PTCD1-202ENST00000419981 ATAD2BQ9ULI0 1458 aa33.77■■■■□ 3
PTCD1-202ENST00000419981 SMARCA2P51531 1590 aa33.77■■■■□ 3
PTCD1-202ENST00000419981 HMGXB3Q12766 1538 aa33.71■■■□□ 2.99
PTCD1-202ENST00000419981 BAZ1AQ9NRL2 1556 aaPredicted RBP33.69■■■□□ 2.98
PTCD1-202ENST00000419981 PEG3Q9GZU2 1588 aa33.52■■■□□ 2.96
PTCD1-202ENST00000419981 BAZ1BQ9UIG0 1483 aaKnown RBP33.5■■■□□ 2.95
PTCD1-202ENST00000419981 ERCC6Q03468 1493 aa33.48■■■□□ 2.95
PTCD1-202ENST00000419981 MROH2BQ7Z745 1585 aa33.4■■■□□ 2.94
PTCD1-202ENST00000419981 CUX2O14529 1486 aa33.4■■■□□ 2.94
PTCD1-202ENST00000419981 NESP48681 1621 aa33.32■■■□□ 2.92
PTCD1-202ENST00000419981 LAMC3Q9Y6N6 1575 aa33.2■■■□□ 2.91
PTCD1-202ENST00000419981 DNAJC5Q9H3Z4 198 aa33.15■■■□□ 2.9
PTCD1-202ENST00000419981 WIZO95785 1651 aa33.1■■■□□ 2.89
PTCD1-202ENST00000419981 KIF21AQ7Z4S6 1674 aa33.09■■■□□ 2.89
PTCD1-202ENST00000419981 THOC2Q8NI27 1593 aaKnown RBP33.08■■■□□ 2.89
PTCD1-202ENST00000419981 PDS5BQ9NTI5 1447 aa32.89■■■□□ 2.86
PTCD1-202ENST00000419981 CADPSQ9ULU8 1353 aa32.81■■■□□ 2.84
PTCD1-202ENST00000419981 RSF1Q96T23 1441 aaPredicted RBP32.68■■■□□ 2.82
PTCD1-202ENST00000419981 TOP2AP11388 1531 aaKnown RBP32.64■■■□□ 2.82
PTCD1-202ENST00000419981 MRC2Q9UBG0 1479 aa32.64■■■□□ 2.82
PTCD1-202ENST00000419981 WDR62O43379 1518 aa32.6■■■□□ 2.81
PTCD1-202ENST00000419981 CEP164Q9UPV0 1460 aa32.54■■■□□ 2.8
PTCD1-202ENST00000419981 PRDM2Q13029 1718 aa32.51■■■□□ 2.79
PTCD1-202ENST00000419981 CFTRP13569 1480 aa32.48■■■□□ 2.79
PTCD1-202ENST00000419981 FANCD2Q9BXW9 1451 aa32.48■■■□□ 2.79
PTCD1-202ENST00000419981 URB2Q14146 1524 aaKnown RBP32.22■■■□□ 2.75
PTCD1-202ENST00000419981 CCDC88BA6NC98 1476 aa32.19■■■□□ 2.74
PTCD1-202ENST00000419981 TOPBP1Q92547 1522 aa31.9■■■□□ 2.7
PTCD1-202ENST00000419981 IFT140Q96RY7 1462 aa31.86■■■□□ 2.69
PTCD1-202ENST00000419981 ABCC8Q09428 1581 aa31.85■■■□□ 2.69
PTCD1-202ENST00000419981 DNMBPQ6XZF7 1577 aa31.85■■■□□ 2.69
PTCD1-202ENST00000419981 ZNF608Q9ULD9 1512 aaPredicted RBP31.79■■■□□ 2.68
PTCD1-202ENST00000419981 OSCARQ8IYS5 282 aa31.78■■■□□ 2.68
PTCD1-202ENST00000419981 TRIM41Q8WV44 630 aa31.76■■■□□ 2.67
PTCD1-202ENST00000419981 EIF4G3O43432 1585 aaKnown RBP31.74■■■□□ 2.67
PTCD1-202ENST00000419981 TARBP1Q13395 1621 aaKnown RBP31.67■■■□□ 2.66
PTCD1-202ENST00000419981 CHD1O14646 1710 aa31.58■■■□□ 2.65
PTCD1-202ENST00000419981 POLA1P09884 1462 aaPredicted RBP31.57■■■□□ 2.64
PTCD1-202ENST00000419981 RIMBP3CA6NJZ7 1639 aa31.54■■■□□ 2.64
PTCD1-202ENST00000419981 RIMBP3BA6NNM3 1639 aa31.54■■■□□ 2.64
PTCD1-202ENST00000419981 RIMBP3Q9UFD9 1639 aa31.54■■■□□ 2.64
PTCD1-202ENST00000419981 AQRO60306 1485 aaKnown RBP eCLIP31.48■■■□□ 2.63
PTCD1-202ENST00000419981 RAD54L2Q9Y4B4 1467 aa31.42■■■□□ 2.62
PTCD1-202ENST00000419981 WDR97A6NE52 1622 aa31.4■■■□□ 2.62
PTCD1-202ENST00000419981 FGD5Q6ZNL6 1462 aa31.4■■■□□ 2.62
PTCD1-202ENST00000419981 CUX1P39880 1505 aa31.39■■■□□ 2.61
PTCD1-202ENST00000419981 SOGA1O94964 1423 aa31.38■■■□□ 2.61
PTCD1-202ENST00000419981 ARHGEF11O15085 1522 aa31.38■■■□□ 2.61
PTCD1-202ENST00000419981 TDRD9Q8NDG6 1382 aaKnown RBP31.28■■■□□ 2.6
PTCD1-202ENST00000419981 SUPT5HO00267 1087 aaKnown RBP31.25■■■□□ 2.59
PTCD1-202ENST00000419981 PBRM1Q86U86 1689 aa31.24■■■□□ 2.59
PTCD1-202ENST00000419981 SNAPC4Q5SXM2 1469 aa31.22■■■□□ 2.59
PTCD1-202ENST00000419981 FBLN2P98095 1184 aa31.22■■■□□ 2.59
PTCD1-202ENST00000419981 MAGI1Q96QZ7 1491 aaPredicted RBP31.16■■■□□ 2.58
PTCD1-202ENST00000419981 GRIN2BQ13224 1484 aa31.14■■■□□ 2.57
PTCD1-202ENST00000419981 SYNJ1O43426 1573 aa31.1■■■□□ 2.57
PTCD1-202ENST00000419981 CLASP1Q7Z460 1538 aa31.08■■■□□ 2.57
PTCD1-202ENST00000419981 ABCA5Q8WWZ7 1642 aa31.07■■■□□ 2.56
PTCD1-202ENST00000419981 ARAP1Q96P48 1450 aa31.06■■■□□ 2.56
PTCD1-202ENST00000419981 ABCA10Q8WWZ4 1543 aa31.04■■■□□ 2.56
PTCD1-202ENST00000419981 GAPVD1Q14C86 1478 aa31.04■■■□□ 2.56
PTCD1-202ENST00000419981 SYNJ2O15056 1496 aa31.03■■■□□ 2.56
PTCD1-202ENST00000419981 BIVM-ERCC5R4GMW8 1640 aa31.03■■■□□ 2.56
PTCD1-202ENST00000419981 CYB5RLQ6IPT4 315 aa31.02■■■□□ 2.56
PTCD1-202ENST00000419981 CHMP7Q8WUX9 453 aaPredicted RBP31.02■■■□□ 2.56
PTCD1-202ENST00000419981 TOP2BQ02880 1626 aa30.97■■■□□ 2.55
PTCD1-202ENST00000419981 WRNQ14191 1432 aaPredicted RBP eCLIP30.9■■■□□ 2.54
PTCD1-202ENST00000419981 ADAMTS12P58397 1594 aa30.82■■■□□ 2.52
PTCD1-202ENST00000419981 GRIN2AQ12879 1464 aa30.76■■■□□ 2.51
PTCD1-202ENST00000419981 ERICH3Q5RHP9 1530 aa30.69■■■□□ 2.5
PTCD1-202ENST00000419981 CEP170Q5SW79 1584 aa30.68■■■□□ 2.5
PTCD1-202ENST00000419981 TRHP20396 242 aaPredicted RBP30.68■■■□□ 2.5
PTCD1-202ENST00000419981 FHAD1B1AJZ9 1412 aa30.64■■■□□ 2.49
PTCD1-202ENST00000419981 NUP160Q12769 1436 aa30.62■■■□□ 2.49
PTCD1-202ENST00000419981 SHROOM2Q13796 1616 aa30.59■■■□□ 2.49
PTCD1-202ENST00000419981 ERCC6L2Q5T890 1561 aa30.58■■■□□ 2.49
PTCD1-202ENST00000419981 RUSC2Q8N2Y8 1516 aa30.4■■■□□ 2.46
PTCD1-202ENST00000419981 CUL7Q14999 1698 aa30.36■■■□□ 2.45
PTCD1-202ENST00000419981 PRG4Q92954 1404 aaPredicted RBP30.3■■■□□ 2.44
PTCD1-202ENST00000419981 KIF27Q86VH2 1401 aa30.27■■■□□ 2.44
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms