RNA–Protein interactions for RNA: ENST00000418107.2

HLA-DMB-258, Transcript of major histocompatibility complex, class II, DM beta, humanhuman

APPRIS P1 BASIC

Gene HLA-DMB, Length 1,397 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMB-258ENST00000418107 NISCHQ9Y2I1 1504 aa31.55■■■□□ 2.64
HLA-DMB-258ENST00000418107 ABCC9O60706 1549 aa28.68■■■□□ 2.18
HLA-DMB-258ENST00000418107 CCDC180Q9P1Z9 1646 aa28.37■■■□□ 2.13
HLA-DMB-258ENST00000418107 RB1CC1Q8TDY2 1594 aa27.14■■□□□ 1.94
HLA-DMB-258ENST00000418107 DNAJC5BQ9UF47 199 aa27.12■■□□□ 1.93
HLA-DMB-258ENST00000418107 NACADO15069 1562 aa26.9■■□□□ 1.9
HLA-DMB-258ENST00000418107 DCAF8L2P0C7V8 631 aa26.77■■□□□ 1.88
HLA-DMB-258ENST00000418107 PABPN1Q86U42 306 aaKnown RBP eCLIP26.68■■□□□ 1.86
HLA-DMB-258ENST00000418107 UNC13AQ9UPW8 1703 aa26.52■■□□□ 1.84
HLA-DMB-258ENST00000418107 MYO15BQ96JP2 1530 aa26.43■■□□□ 1.82
HLA-DMB-258ENST00000418107 BICRAQ9NZM4 1560 aa26.39■■□□□ 1.81
HLA-DMB-258ENST00000418107 ZCCHC6Q5VYS8 1495 aaKnown RBP26.11■■□□□ 1.77
HLA-DMB-258ENST00000418107 DCAF1Q9Y4B6 1507 aa26.02■■□□□ 1.76
HLA-DMB-258ENST00000418107 SHROOM4Q9ULL8 1493 aa25.96■■□□□ 1.75
HLA-DMB-258ENST00000418107 SCRIBQ14160 1630 aa25.9■■□□□ 1.74
HLA-DMB-258ENST00000418107 CC2D2AQ9P2K1 1620 aa25.86■■□□□ 1.73
HLA-DMB-258ENST00000418107 CECR2Q9BXF3 1484 aa25.84■■□□□ 1.73
HLA-DMB-258ENST00000418107 EIF4G1Q04637 1599 aaKnown RBP25.75■■□□□ 1.71
HLA-DMB-258ENST00000418107 DNAJC5Q9H3Z4 198 aa25.04■■□□□ 1.6
HLA-DMB-258ENST00000418107 NCAPD3P42695 1498 aa24.85■■□□□ 1.57
HLA-DMB-258ENST00000418107 CUX2O14529 1486 aa24.78■■□□□ 1.56
HLA-DMB-258ENST00000418107 ERCC6Q03468 1493 aa24.77■■□□□ 1.56
HLA-DMB-258ENST00000418107 ATAD2BQ9ULI0 1458 aa24.75■■□□□ 1.55
HLA-DMB-258ENST00000418107 SMARCA4P51532 1647 aa24.66■■□□□ 1.54
HLA-DMB-258ENST00000418107 SMARCA2P51531 1590 aa24.65■■□□□ 1.54
HLA-DMB-258ENST00000418107 HMGXB3Q12766 1538 aa24.64■■□□□ 1.53
HLA-DMB-258ENST00000418107 NESP48681 1621 aa24.57■■□□□ 1.52
HLA-DMB-258ENST00000418107 BAZ1BQ9UIG0 1483 aaKnown RBP24.5■■□□□ 1.51
HLA-DMB-258ENST00000418107 BAZ1AQ9NRL2 1556 aaPredicted RBP24.49■■□□□ 1.51
HLA-DMB-258ENST00000418107 PEG3Q9GZU2 1588 aa24.4■■□□□ 1.5
HLA-DMB-258ENST00000418107 THOC2Q8NI27 1593 aaKnown RBP24.34■■□□□ 1.49
HLA-DMB-258ENST00000418107 MROH2BQ7Z745 1585 aa24.33■■□□□ 1.49
HLA-DMB-258ENST00000418107 LAMC3Q9Y6N6 1575 aa24.31■■□□□ 1.48
HLA-DMB-258ENST00000418107 KIF21AQ7Z4S6 1674 aa24.21■■□□□ 1.47
HLA-DMB-258ENST00000418107 PDS5BQ9NTI5 1447 aa24.19■■□□□ 1.46
HLA-DMB-258ENST00000418107 CADPSQ9ULU8 1353 aa24.09■■□□□ 1.45
HLA-DMB-258ENST00000418107 MRC2Q9UBG0 1479 aa24.01■■□□□ 1.43
HLA-DMB-258ENST00000418107 WIZO95785 1651 aa24.01■■□□□ 1.43
HLA-DMB-258ENST00000418107 WDR62O43379 1518 aa23.96■■□□□ 1.43
HLA-DMB-258ENST00000418107 TRIM41Q8WV44 630 aa23.89■■□□□ 1.41
HLA-DMB-258ENST00000418107 CEP164Q9UPV0 1460 aa23.87■■□□□ 1.41
HLA-DMB-258ENST00000418107 FANCD2Q9BXW9 1451 aa23.83■■□□□ 1.41
HLA-DMB-258ENST00000418107 CFTRP13569 1480 aa23.77■■□□□ 1.4
HLA-DMB-258ENST00000418107 RSF1Q96T23 1441 aaPredicted RBP23.73■■□□□ 1.39
HLA-DMB-258ENST00000418107 TOP2AP11388 1531 aaKnown RBP23.69■■□□□ 1.38
HLA-DMB-258ENST00000418107 URB2Q14146 1524 aaKnown RBP23.65■■□□□ 1.38
HLA-DMB-258ENST00000418107 OSCARQ8IYS5 282 aa23.61■■□□□ 1.37
HLA-DMB-258ENST00000418107 PRDM2Q13029 1718 aa23.46■■□□□ 1.35
HLA-DMB-258ENST00000418107 CCDC88BA6NC98 1476 aa23.44■■□□□ 1.34
HLA-DMB-258ENST00000418107 ZNF608Q9ULD9 1512 aaPredicted RBP23.41■■□□□ 1.34
HLA-DMB-258ENST00000418107 IFT140Q96RY7 1462 aa23.4■■□□□ 1.34
HLA-DMB-258ENST00000418107 TOPBP1Q92547 1522 aa23.35■■□□□ 1.33
HLA-DMB-258ENST00000418107 RIMBP3CA6NJZ7 1639 aa23.33■■□□□ 1.33
HLA-DMB-258ENST00000418107 RIMBP3BA6NNM3 1639 aa23.33■■□□□ 1.33
HLA-DMB-258ENST00000418107 RIMBP3Q9UFD9 1639 aa23.33■■□□□ 1.33
HLA-DMB-258ENST00000418107 SUPT5HO00267 1087 aaKnown RBP23.28■■□□□ 1.32
HLA-DMB-258ENST00000418107 ARHGEF11O15085 1522 aa23.25■■□□□ 1.31
HLA-DMB-258ENST00000418107 EIF4G3O43432 1585 aaKnown RBP23.25■■□□□ 1.31
HLA-DMB-258ENST00000418107 ABCC8Q09428 1581 aa23.25■■□□□ 1.31
HLA-DMB-258ENST00000418107 DNMBPQ6XZF7 1577 aa23.23■■□□□ 1.31
HLA-DMB-258ENST00000418107 AQRO60306 1485 aaKnown RBP eCLIP23.16■■□□□ 1.3
HLA-DMB-258ENST00000418107 TARBP1Q13395 1621 aaKnown RBP23.14■■□□□ 1.3
HLA-DMB-258ENST00000418107 CHD1O14646 1710 aa23.1■■□□□ 1.29
HLA-DMB-258ENST00000418107 POLA1P09884 1462 aaPredicted RBP23.1■■□□□ 1.29
HLA-DMB-258ENST00000418107 CYB5RLQ6IPT4 315 aa23.1■■□□□ 1.29
HLA-DMB-258ENST00000418107 FBLN2P98095 1184 aa23.07■■□□□ 1.28
HLA-DMB-258ENST00000418107 RAD54L2Q9Y4B4 1467 aa23.04■■□□□ 1.28
HLA-DMB-258ENST00000418107 ARAP1Q96P48 1450 aa23.01■■□□□ 1.27
HLA-DMB-258ENST00000418107 TDRD9Q8NDG6 1382 aaKnown RBP22.99■■□□□ 1.27
HLA-DMB-258ENST00000418107 SOGA1O94964 1423 aa22.99■■□□□ 1.27
HLA-DMB-258ENST00000418107 SNAPC4Q5SXM2 1469 aa22.92■■□□□ 1.26
HLA-DMB-258ENST00000418107 FGD5Q6ZNL6 1462 aa22.92■■□□□ 1.26
HLA-DMB-258ENST00000418107 TRHP20396 242 aaPredicted RBP22.92■■□□□ 1.26
HLA-DMB-258ENST00000418107 CUX1P39880 1505 aa22.87■■□□□ 1.25
HLA-DMB-258ENST00000418107 WDR97A6NE52 1622 aa22.86■■□□□ 1.25
HLA-DMB-258ENST00000418107 CLASP1Q7Z460 1538 aa22.85■■□□□ 1.25
HLA-DMB-258ENST00000418107 CHMP7Q8WUX9 453 aaPredicted RBP22.84■■□□□ 1.25
HLA-DMB-258ENST00000418107 MAGI1Q96QZ7 1491 aaPredicted RBP22.83■■□□□ 1.24
HLA-DMB-258ENST00000418107 GRIN2BQ13224 1484 aa22.81■■□□□ 1.24
HLA-DMB-258ENST00000418107 SYNJ1O43426 1573 aa22.8■■□□□ 1.24
HLA-DMB-258ENST00000418107 SYNJ2O15056 1496 aa22.76■■□□□ 1.23
HLA-DMB-258ENST00000418107 GAPVD1Q14C86 1478 aa22.7■■□□□ 1.22
HLA-DMB-258ENST00000418107 PBRM1Q86U86 1689 aa22.69■■□□□ 1.22
HLA-DMB-258ENST00000418107 ABCA10Q8WWZ4 1543 aa22.64■■□□□ 1.21
HLA-DMB-258ENST00000418107 ABCA5Q8WWZ7 1642 aa22.62■■□□□ 1.21
HLA-DMB-258ENST00000418107 GRIN2AQ12879 1464 aa22.52■■□□□ 1.2
HLA-DMB-258ENST00000418107 ERCC6L2Q5T890 1561 aa22.5■■□□□ 1.19
HLA-DMB-258ENST00000418107 WRNQ14191 1432 aaPredicted RBP eCLIP22.5■■□□□ 1.19
HLA-DMB-258ENST00000418107 ADAMTS12P58397 1594 aa22.48■■□□□ 1.19
HLA-DMB-258ENST00000418107 CEP170Q5SW79 1584 aa22.46■■□□□ 1.19
HLA-DMB-258ENST00000418107 NUP160Q12769 1436 aa22.45■■□□□ 1.18
HLA-DMB-258ENST00000418107 TOP2BQ02880 1626 aa22.42■■□□□ 1.18
HLA-DMB-258ENST00000418107 AEBP2Q6ZN18 517 aaPredicted RBP22.41■■□□□ 1.18
HLA-DMB-258ENST00000418107 BIVM-ERCC5R4GMW8 1640 aa22.41■■□□□ 1.18
HLA-DMB-258ENST00000418107 FHAD1B1AJZ9 1412 aa22.4■■□□□ 1.18
HLA-DMB-258ENST00000418107 SHROOM2Q13796 1616 aa22.37■■□□□ 1.17
HLA-DMB-258ENST00000418107 ERICH3Q5RHP9 1530 aa22.34■■□□□ 1.17
HLA-DMB-258ENST00000418107 PRG4Q92954 1404 aaPredicted RBP22.27■■□□□ 1.16
HLA-DMB-258ENST00000418107 JPH4Q96JJ6 628 aa22.23■■□□□ 1.15
HLA-DMB-258ENST00000418107 KIF13AQ9H1H9 1805 aa22.17■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms