RNA–Protein interactions for RNA: ENST00000418006.1

LINC00940-201, long intergenic non-protein coding RNA 940, humanhuman

TSL 2 BASIC

Gene LINC00940, Length 2,350 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00940-201ENST00000418006 NISCHQ9Y2I1 1504 aa30.01■■■□□ 2.4
LINC00940-201ENST00000418006 CCDC180Q9P1Z9 1646 aa25.87■■□□□ 1.73
LINC00940-201ENST00000418006 DCAF8L2P0C7V8 631 aa25.24■■□□□ 1.63
LINC00940-201ENST00000418006 ZCCHC6Q5VYS8 1495 aaKnown RBP25.22■■□□□ 1.63
LINC00940-201ENST00000418006 SHROOM4Q9ULL8 1493 aa25.11■■□□□ 1.61
LINC00940-201ENST00000418006 ABCC9O60706 1549 aa24.66■■□□□ 1.54
LINC00940-201ENST00000418006 DCAF1Q9Y4B6 1507 aa24.61■■□□□ 1.53
LINC00940-201ENST00000418006 SUPT5HO00267 1087 aaKnown RBP24.29■■□□□ 1.48
LINC00940-201ENST00000418006 MYO15BQ96JP2 1530 aa24.17■■□□□ 1.46
LINC00940-201ENST00000418006 SCRIBQ14160 1630 aa24.16■■□□□ 1.46
LINC00940-201ENST00000418006 NACADO15069 1562 aa24.11■■□□□ 1.45
LINC00940-201ENST00000418006 RB1CC1Q8TDY2 1594 aa23.9■■□□□ 1.42
LINC00940-201ENST00000418006 UNC13AQ9UPW8 1703 aa23.47■■□□□ 1.35
LINC00940-201ENST00000418006 CECR2Q9BXF3 1484 aa23.46■■□□□ 1.35
LINC00940-201ENST00000418006 RSF1Q96T23 1441 aaPredicted RBP23.46■■□□□ 1.35
LINC00940-201ENST00000418006 PABPN1Q86U42 306 aaKnown RBP eCLIP23.44■■□□□ 1.34
LINC00940-201ENST00000418006 MROH2BQ7Z745 1585 aa23.3■■□□□ 1.32
LINC00940-201ENST00000418006 BICRAQ9NZM4 1560 aa23.22■■□□□ 1.31
LINC00940-201ENST00000418006 CHIC1Q5VXU3 224 aa23.18■■□□□ 1.3
LINC00940-201ENST00000418006 WIZO95785 1651 aa23.14■■□□□ 1.3
LINC00940-201ENST00000418006 BAZ1AQ9NRL2 1556 aaPredicted RBP23.12■■□□□ 1.29
LINC00940-201ENST00000418006 SMARCA4P51532 1647 aa23.02■■□□□ 1.28
LINC00940-201ENST00000418006 HRCP23327 699 aa22.84■■□□□ 1.25
LINC00940-201ENST00000418006 TOP2AP11388 1531 aaKnown RBP22.76■■□□□ 1.23
LINC00940-201ENST00000418006 TRIM41Q8WV44 630 aa22.68■■□□□ 1.22
LINC00940-201ENST00000418006 CCDC88BA6NC98 1476 aa22.66■■□□□ 1.22
LINC00940-201ENST00000418006 ATAD2BQ9ULI0 1458 aa22.62■■□□□ 1.21
LINC00940-201ENST00000418006 SMARCA2P51531 1590 aa22.61■■□□□ 1.21
LINC00940-201ENST00000418006 PEG3Q9GZU2 1588 aa22.58■■□□□ 1.21
LINC00940-201ENST00000418006 BAZ1BQ9UIG0 1483 aaKnown RBP22.54■■□□□ 1.2
LINC00940-201ENST00000418006 EIF4G1Q04637 1599 aaKnown RBP22.53■■□□□ 1.2
LINC00940-201ENST00000418006 LOC105371045A0A1W2PR82 267 aa22.49■■□□□ 1.19
LINC00940-201ENST00000418006 FAM9AQ8IZU1 332 aaPredicted RBP22.48■■□□□ 1.19
LINC00940-201ENST00000418006 PCGF6Q9BYE7 350 aa22.37■■□□□ 1.17
LINC00940-201ENST00000418006 ABCC8Q09428 1581 aa22.36■■□□□ 1.17
LINC00940-201ENST00000418006 EHMT2Q96KQ7 1210 aa22.34■■□□□ 1.17
LINC00940-201ENST00000418006 PPARGC1BQ86YN6 1023 aaKnown RBP22.32■■□□□ 1.16
LINC00940-201ENST00000418006 NCAPD3P42695 1498 aa22.3■■□□□ 1.16
LINC00940-201ENST00000418006 HMGXB3Q12766 1538 aa22.24■■□□□ 1.15
LINC00940-201ENST00000418006 CC2D2AQ9P2K1 1620 aa22.18■■□□□ 1.14
LINC00940-201ENST00000418006 WRNQ14191 1432 aaPredicted RBP eCLIP22.09■■□□□ 1.13
LINC00940-201ENST00000418006 SOGA1O94964 1423 aa22■■□□□ 1.11
LINC00940-201ENST00000418006 SYNJ1O43426 1573 aa21.98■■□□□ 1.11
LINC00940-201ENST00000418006 RUSC2Q8N2Y8 1516 aa21.93■■□□□ 1.1
LINC00940-201ENST00000418006 CFTRP13569 1480 aa21.92■■□□□ 1.1
LINC00940-201ENST00000418006 PELP1Q8IZL8 1130 aaKnown RBP21.9■■□□□ 1.1
LINC00940-201ENST00000418006 CADPSQ9ULU8 1353 aa21.85■■□□□ 1.09
LINC00940-201ENST00000418006 DNAJC5BQ9UF47 199 aa21.84■■□□□ 1.09
LINC00940-201ENST00000418006 CSRNP3Q8WYN3 585 aa21.83■■□□□ 1.09
LINC00940-201ENST00000418006 TOP2BQ02880 1626 aa21.78■■□□□ 1.08
LINC00940-201ENST00000418006 EEA1Q15075 1411 aa21.74■■□□□ 1.07
LINC00940-201ENST00000418006 CUX1P39880 1505 aa21.74■■□□□ 1.07
LINC00940-201ENST00000418006 UBTFP17480 764 aaKnown RBP21.74■■□□□ 1.07
LINC00940-201ENST00000418006 TRIM26Q12899 539 aaPredicted RBP21.73■■□□□ 1.07
LINC00940-201ENST00000418006 NESP48681 1621 aa21.72■■□□□ 1.07
LINC00940-201ENST00000418006 BIVM-ERCC5R4GMW8 1640 aa21.7■■□□□ 1.06
LINC00940-201ENST00000418006 PRDM2Q13029 1718 aa21.67■■□□□ 1.06
LINC00940-201ENST00000418006 FANCD2Q9BXW9 1451 aa21.63■■□□□ 1.05
LINC00940-201ENST00000418006 GOLGA3Q08378 1498 aa21.58■■□□□ 1.05
LINC00940-201ENST00000418006 TNIKQ9UKE5 1360 aa21.55■■□□□ 1.04
LINC00940-201ENST00000418006 RANGAP1P46060 587 aaPredicted RBP21.54■■□□□ 1.04
LINC00940-201ENST00000418006 CEP162Q5TB80 1403 aa21.54■■□□□ 1.04
LINC00940-201ENST00000418006 SCAF1Q9H7N4 1312 aaKnown RBP21.54■■□□□ 1.04
LINC00940-201ENST00000418006 CEP164Q9UPV0 1460 aa21.54■■□□□ 1.04
LINC00940-201ENST00000418006 ZEB1P37275 1124 aaPredicted RBP21.53■■□□□ 1.04
LINC00940-201ENST00000418006 RAPGEF2Q9Y4G8 1499 aa21.5■■□□□ 1.03
LINC00940-201ENST00000418006 FGD5Q6ZNL6 1462 aa21.49■■□□□ 1.03
LINC00940-201ENST00000418006 LAMC3Q9Y6N6 1575 aa21.49■■□□□ 1.03
LINC00940-201ENST00000418006 KIF27Q86VH2 1401 aa21.49■■□□□ 1.03
LINC00940-201ENST00000418006 KIF21BO75037 1637 aa21.47■■□□□ 1.03
LINC00940-201ENST00000418006 CUX2O14529 1486 aa21.44■■□□□ 1.02
LINC00940-201ENST00000418006 PDS5BQ9NTI5 1447 aa21.41■■□□□ 1.02
LINC00940-201ENST00000418006 TTBK1Q5TCY1 1321 aaPredicted RBP21.41■■□□□ 1.02
LINC00940-201ENST00000418006 TOPBP1Q92547 1522 aa21.4■■□□□ 1.02
LINC00940-201ENST00000418006 DNMBPQ6XZF7 1577 aa21.38■■□□□ 1.01
LINC00940-201ENST00000418006 RAD54L2Q9Y4B4 1467 aa21.38■■□□□ 1.01
LINC00940-201ENST00000418006 PRXQ9BXM0 1461 aa21.35■■□□□ 1.01
LINC00940-201ENST00000418006 URB2Q14146 1524 aaKnown RBP21.34■■□□□ 1.01
LINC00940-201ENST00000418006 POLA1P09884 1462 aaPredicted RBP21.34■■□□□ 1.01
LINC00940-201ENST00000418006 KIF21AQ7Z4S6 1674 aa21.33■■□□□ 1
LINC00940-201ENST00000418006 CLIP1P30622 1438 aa21.32■■□□□ 1
LINC00940-201ENST00000418006 IGF1RP08069 1367 aa21.31■■□□□ 1
LINC00940-201ENST00000418006 ERICH3Q5RHP9 1530 aa21.26■□□□□ 0.99
LINC00940-201ENST00000418006 CARMIL1Q5VZK9 1371 aa21.23■□□□□ 0.99
LINC00940-201ENST00000418006 ABCA10Q8WWZ4 1543 aa21.2■□□□□ 0.98
LINC00940-201ENST00000418006 TDRD9Q8NDG6 1382 aaKnown RBP21.2■□□□□ 0.98
LINC00940-201ENST00000418006 VPS8Q8N3P4 1428 aa21.1■□□□□ 0.97
LINC00940-201ENST00000418006 MRC2Q9UBG0 1479 aa21.1■□□□□ 0.97
LINC00940-201ENST00000418006 ERCC6Q03468 1493 aa21.09■□□□□ 0.97
LINC00940-201ENST00000418006 APLP2Q06481 763 aa21.09■□□□□ 0.97
LINC00940-201ENST00000418006 ACIN1Q9UKV3 1341 aaKnown RBP21.05■□□□□ 0.96
LINC00940-201ENST00000418006 GAPVD1Q14C86 1478 aa21.05■□□□□ 0.96
LINC00940-201ENST00000418006 WDR97A6NE52 1622 aa21.04■□□□□ 0.96
LINC00940-201ENST00000418006 ARAP1Q96P48 1450 aa21.03■□□□□ 0.96
LINC00940-201ENST00000418006 MYT1Q01538 1121 aa21.02■□□□□ 0.96
LINC00940-201ENST00000418006 P3H3Q8IVL6 736 aa21.01■□□□□ 0.95
LINC00940-201ENST00000418006 TARBP1Q13395 1621 aaKnown RBP21■□□□□ 0.95
LINC00940-201ENST00000418006 AQRO60306 1485 aaKnown RBP eCLIP20.99■□□□□ 0.95
LINC00940-201ENST00000418006 ARHGAP35Q9NRY4 1499 aa20.99■□□□□ 0.95
LINC00940-201ENST00000418006 ABCA5Q8WWZ7 1642 aa20.98■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms