RNA–Protein interactions for RNA: ENST00000417728.5

PTPA-212, Transcript of protein phosphatase 2 phosphatase activator, humanhuman

TSL 3

Gene PTPA, Length 967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPA-212ENST00000417728 NISCHQ9Y2I1 1504 aa23.62■■□□□ 1.37
PTPA-212ENST00000417728 CCDC180Q9P1Z9 1646 aa20.85■□□□□ 0.93
PTPA-212ENST00000417728 ABCC9O60706 1549 aa19.93■□□□□ 0.78
PTPA-212ENST00000417728 ZCCHC6Q5VYS8 1495 aaKnown RBP19.79■□□□□ 0.76
PTPA-212ENST00000417728 DCAF1Q9Y4B6 1507 aa19.6■□□□□ 0.73
PTPA-212ENST00000417728 MYO15BQ96JP2 1530 aa19.52■□□□□ 0.72
PTPA-212ENST00000417728 NACADO15069 1562 aa19.45■□□□□ 0.7
PTPA-212ENST00000417728 DCAF8L2P0C7V8 631 aa19.38■□□□□ 0.69
PTPA-212ENST00000417728 RB1CC1Q8TDY2 1594 aa19.36■□□□□ 0.69
PTPA-212ENST00000417728 SCRIBQ14160 1630 aa19■□□□□ 0.63
PTPA-212ENST00000417728 UNC13AQ9UPW8 1703 aa18.98■□□□□ 0.63
PTPA-212ENST00000417728 SHROOM4Q9ULL8 1493 aa18.84■□□□□ 0.61
PTPA-212ENST00000417728 BICRAQ9NZM4 1560 aa18.81■□□□□ 0.6
PTPA-212ENST00000417728 PABPN1Q86U42 306 aaKnown RBP eCLIP18.68■□□□□ 0.58
PTPA-212ENST00000417728 CECR2Q9BXF3 1484 aa18.33■□□□□ 0.53
PTPA-212ENST00000417728 BAZ1AQ9NRL2 1556 aaPredicted RBP18.27■□□□□ 0.52
PTPA-212ENST00000417728 SMARCA4P51532 1647 aa18.25■□□□□ 0.51
PTPA-212ENST00000417728 EIF4G1Q04637 1599 aaKnown RBP18.25■□□□□ 0.51
PTPA-212ENST00000417728 MROH2BQ7Z745 1585 aa18.21■□□□□ 0.51
PTPA-212ENST00000417728 RSF1Q96T23 1441 aaPredicted RBP18.15■□□□□ 0.5
PTPA-212ENST00000417728 DNAJC5BQ9UF47 199 aa18.11■□□□□ 0.49
PTPA-212ENST00000417728 PEG3Q9GZU2 1588 aa18.08■□□□□ 0.49
PTPA-212ENST00000417728 CC2D2AQ9P2K1 1620 aa18.05■□□□□ 0.48
PTPA-212ENST00000417728 WIZO95785 1651 aa18.03■□□□□ 0.48
PTPA-212ENST00000417728 ATAD2BQ9ULI0 1458 aa18.01■□□□□ 0.47
PTPA-212ENST00000417728 SMARCA2P51531 1590 aa18.01■□□□□ 0.47
PTPA-212ENST00000417728 NCAPD3P42695 1498 aa17.95■□□□□ 0.46
PTPA-212ENST00000417728 HMGXB3Q12766 1538 aa17.93■□□□□ 0.46
PTPA-212ENST00000417728 SUPT5HO00267 1087 aaKnown RBP17.9■□□□□ 0.46
PTPA-212ENST00000417728 BAZ1BQ9UIG0 1483 aaKnown RBP17.88■□□□□ 0.45
PTPA-212ENST00000417728 TOP2AP11388 1531 aaKnown RBP17.88■□□□□ 0.45
PTPA-212ENST00000417728 CCDC88BA6NC98 1476 aa17.63■□□□□ 0.41
PTPA-212ENST00000417728 CFTRP13569 1480 aa17.43■□□□□ 0.38
PTPA-212ENST00000417728 CADPSQ9ULU8 1353 aa17.41■□□□□ 0.38
PTPA-212ENST00000417728 LAMC3Q9Y6N6 1575 aa17.41■□□□□ 0.38
PTPA-212ENST00000417728 PRDM2Q13029 1718 aa17.39■□□□□ 0.37
PTPA-212ENST00000417728 NESP48681 1621 aa17.36■□□□□ 0.37
PTPA-212ENST00000417728 FANCD2Q9BXW9 1451 aa17.23■□□□□ 0.35
PTPA-212ENST00000417728 PDS5BQ9NTI5 1447 aa17.22■□□□□ 0.35
PTPA-212ENST00000417728 KIF21AQ7Z4S6 1674 aa17.2■□□□□ 0.34
PTPA-212ENST00000417728 CEP164Q9UPV0 1460 aa17.17■□□□□ 0.34
PTPA-212ENST00000417728 ERCC6Q03468 1493 aa17.15■□□□□ 0.34
PTPA-212ENST00000417728 ABCC8Q09428 1581 aa17.14■□□□□ 0.33
PTPA-212ENST00000417728 WRNQ14191 1432 aaPredicted RBP eCLIP17.08■□□□□ 0.32
PTPA-212ENST00000417728 CUX1P39880 1505 aa17.06■□□□□ 0.32
PTPA-212ENST00000417728 SYNJ1O43426 1573 aa17.06■□□□□ 0.32
PTPA-212ENST00000417728 THOC2Q8NI27 1593 aaKnown RBP17.06■□□□□ 0.32
PTPA-212ENST00000417728 MRC2Q9UBG0 1479 aa17.05■□□□□ 0.32
PTPA-212ENST00000417728 BIVM-ERCC5R4GMW8 1640 aa17.05■□□□□ 0.32
PTPA-212ENST00000417728 URB2Q14146 1524 aaKnown RBP17.05■□□□□ 0.32
PTPA-212ENST00000417728 DNMBPQ6XZF7 1577 aa17.04■□□□□ 0.32
PTPA-212ENST00000417728 TOP2BQ02880 1626 aa17.03■□□□□ 0.32
PTPA-212ENST00000417728 CHIC1Q5VXU3 224 aa17.02■□□□□ 0.32
PTPA-212ENST00000417728 WDR62O43379 1518 aa17.01■□□□□ 0.31
PTPA-212ENST00000417728 TOPBP1Q92547 1522 aa17.01■□□□□ 0.31
PTPA-212ENST00000417728 CUX2O14529 1486 aa16.93■□□□□ 0.3
PTPA-212ENST00000417728 FGD5Q6ZNL6 1462 aa16.92■□□□□ 0.3
PTPA-212ENST00000417728 TRIM41Q8WV44 630 aa16.9■□□□□ 0.3
PTPA-212ENST00000417728 POLA1P09884 1462 aaPredicted RBP16.9■□□□□ 0.3
PTPA-212ENST00000417728 WDR97A6NE52 1622 aa16.82■□□□□ 0.28
PTPA-212ENST00000417728 TARBP1Q13395 1621 aaKnown RBP16.82■□□□□ 0.28
PTPA-212ENST00000417728 RAD54L2Q9Y4B4 1467 aa16.8■□□□□ 0.28
PTPA-212ENST00000417728 SOGA1O94964 1423 aa16.79■□□□□ 0.28
PTPA-212ENST00000417728 ABCA10Q8WWZ4 1543 aa16.79■□□□□ 0.28
PTPA-212ENST00000417728 IFT140Q96RY7 1462 aa16.79■□□□□ 0.28
PTPA-212ENST00000417728 ABCA5Q8WWZ7 1642 aa16.71■□□□□ 0.27
PTPA-212ENST00000417728 RUSC2Q8N2Y8 1516 aa16.68■□□□□ 0.26
PTPA-212ENST00000417728 KIF27Q86VH2 1401 aa16.68■□□□□ 0.26
PTPA-212ENST00000417728 ZNF608Q9ULD9 1512 aaPredicted RBP16.67■□□□□ 0.26
PTPA-212ENST00000417728 EEA1Q15075 1411 aa16.67■□□□□ 0.26
PTPA-212ENST00000417728 EIF4G3O43432 1585 aaKnown RBP16.66■□□□□ 0.26
PTPA-212ENST00000417728 TDRD9Q8NDG6 1382 aaKnown RBP16.64■□□□□ 0.25
PTPA-212ENST00000417728 GAPVD1Q14C86 1478 aa16.63■□□□□ 0.25
PTPA-212ENST00000417728 AQRO60306 1485 aaKnown RBP eCLIP16.61■□□□□ 0.252e-7■■■■□ 20.4
PTPA-212ENST00000417728 PBRM1Q86U86 1689 aa16.61■□□□□ 0.25
PTPA-212ENST00000417728 ERICH3Q5RHP9 1530 aa16.59■□□□□ 0.25
PTPA-212ENST00000417728 GRIN2BQ13224 1484 aa16.56■□□□□ 0.24
PTPA-212ENST00000417728 IGF1RP08069 1367 aa16.56■□□□□ 0.24
PTPA-212ENST00000417728 CUL7Q14999 1698 aa16.54■□□□□ 0.24
PTPA-212ENST00000417728 CSRNP3Q8WYN3 585 aa16.53■□□□□ 0.24
PTPA-212ENST00000417728 ADAMTS12P58397 1594 aa16.52■□□□□ 0.24
PTPA-212ENST00000417728 FAM9AQ8IZU1 332 aaPredicted RBP16.52■□□□□ 0.24
PTPA-212ENST00000417728 PRXQ9BXM0 1461 aa16.51■□□□□ 0.23
PTPA-212ENST00000417728 KIF21BO75037 1637 aa16.51■□□□□ 0.23
PTPA-212ENST00000417728 MAGI1Q96QZ7 1491 aaPredicted RBP16.5■□□□□ 0.23
PTPA-212ENST00000417728 SNAPC4Q5SXM2 1469 aa16.49■□□□□ 0.23
PTPA-212ENST00000417728 FHAD1B1AJZ9 1412 aa16.45■□□□□ 0.22
PTPA-212ENST00000417728 CARMIL1Q5VZK9 1371 aa16.45■□□□□ 0.22
PTPA-212ENST00000417728 RAPGEF2Q9Y4G8 1499 aa16.42■□□□□ 0.22
PTPA-212ENST00000417728 SYNJ2O15056 1496 aa16.42■□□□□ 0.22
PTPA-212ENST00000417728 GOLGA3Q08378 1498 aa16.41■□□□□ 0.22
PTPA-212ENST00000417728 GRIN2AQ12879 1464 aa16.38■□□□□ 0.21
PTPA-212ENST00000417728 CHD1O14646 1710 aa16.36■□□□□ 0.21
PTPA-212ENST00000417728 CHMP7Q8WUX9 453 aaPredicted RBP16.31■□□□□ 0.2
PTPA-212ENST00000417728 CTTNBP2Q8WZ74 1663 aa16.3■□□□□ 0.2
PTPA-212ENST00000417728 CEP170Q5SW79 1584 aa16.3■□□□□ 0.2
PTPA-212ENST00000417728 NUP160Q12769 1436 aa16.29■□□□□ 0.2
PTPA-212ENST00000417728 LOC105371045A0A1W2PR82 267 aa16.28■□□□□ 0.2
PTPA-212ENST00000417728 FBLN2P98095 1184 aa16.28■□□□□ 0.2
PTPA-212ENST00000417728 OSCARQ8IYS5 282 aa16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms