RNA–Protein interactions for RNA: ENST00000417724.1

HLA-DPA1-241, Transcript of major histocompatibility complex, class II, DP alpha 1, humanhuman

Gene HLA-DPA1, Length 305 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DPA1-241ENST00000417724 NISCHQ9Y2I1 1504 aa19.87■□□□□ 0.77
HLA-DPA1-241ENST00000417724 ABCC9O60706 1549 aa18.11■□□□□ 0.49
HLA-DPA1-241ENST00000417724 CCDC180Q9P1Z9 1646 aa17.91■□□□□ 0.46
HLA-DPA1-241ENST00000417724 DNAJC5BQ9UF47 199 aa17.18■□□□□ 0.34
HLA-DPA1-241ENST00000417724 RB1CC1Q8TDY2 1594 aa17.17■□□□□ 0.34
HLA-DPA1-241ENST00000417724 NACADO15069 1562 aa17.01■□□□□ 0.31
HLA-DPA1-241ENST00000417724 DCAF8L2P0C7V8 631 aa16.94■□□□□ 0.3
HLA-DPA1-241ENST00000417724 PABPN1Q86U42 306 aaKnown RBP eCLIP16.86■□□□□ 0.29
HLA-DPA1-241ENST00000417724 UNC13AQ9UPW8 1703 aa16.75■□□□□ 0.27
HLA-DPA1-241ENST00000417724 MYO15BQ96JP2 1530 aa16.7■□□□□ 0.26
HLA-DPA1-241ENST00000417724 BICRAQ9NZM4 1560 aa16.64■□□□□ 0.25
HLA-DPA1-241ENST00000417724 SHROOM4Q9ULL8 1493 aa16.42■□□□□ 0.22
HLA-DPA1-241ENST00000417724 DCAF1Q9Y4B6 1507 aa16.41■□□□□ 0.22
HLA-DPA1-241ENST00000417724 ZCCHC6Q5VYS8 1495 aaKnown RBP16.4■□□□□ 0.22
HLA-DPA1-241ENST00000417724 CECR2Q9BXF3 1484 aa16.35■□□□□ 0.21
HLA-DPA1-241ENST00000417724 CC2D2AQ9P2K1 1620 aa16.34■□□□□ 0.21
HLA-DPA1-241ENST00000417724 SCRIBQ14160 1630 aa16.3■□□□□ 0.2
HLA-DPA1-241ENST00000417724 EIF4G1Q04637 1599 aaKnown RBP16.26■□□□□ 0.19
HLA-DPA1-241ENST00000417724 DNAJC5Q9H3Z4 198 aa15.96■□□□□ 0.15
HLA-DPA1-241ENST00000417724 CUX2O14529 1486 aa15.71■□□□□ 0.1
HLA-DPA1-241ENST00000417724 NCAPD3P42695 1498 aa15.71■□□□□ 0.1
HLA-DPA1-241ENST00000417724 ERCC6Q03468 1493 aa15.68■□□□□ 0.1
HLA-DPA1-241ENST00000417724 ATAD2BQ9ULI0 1458 aa15.61■□□□□ 0.09
HLA-DPA1-241ENST00000417724 SMARCA2P51531 1590 aa15.58■□□□□ 0.08
HLA-DPA1-241ENST00000417724 HMGXB3Q12766 1538 aa15.54■□□□□ 0.08
HLA-DPA1-241ENST00000417724 SMARCA4P51532 1647 aa15.54■□□□□ 0.08
HLA-DPA1-241ENST00000417724 NESP48681 1621 aa15.49■□□□□ 0.07
HLA-DPA1-241ENST00000417724 BAZ1BQ9UIG0 1483 aaKnown RBP15.46■□□□□ 0.06
HLA-DPA1-241ENST00000417724 BAZ1AQ9NRL2 1556 aaPredicted RBP15.45■□□□□ 0.06
HLA-DPA1-241ENST00000417724 PEG3Q9GZU2 1588 aa15.39■□□□□ 0.05
HLA-DPA1-241ENST00000417724 LAMC3Q9Y6N6 1575 aa15.37■□□□□ 0.05
HLA-DPA1-241ENST00000417724 THOC2Q8NI27 1593 aaKnown RBP15.35■□□□□ 0.05
HLA-DPA1-241ENST00000417724 PDS5BQ9NTI5 1447 aa15.32■□□□□ 0.04
HLA-DPA1-241ENST00000417724 MROH2BQ7Z745 1585 aa15.3■□□□□ 0.04
HLA-DPA1-241ENST00000417724 KIF21AQ7Z4S6 1674 aa15.28■□□□□ 0.04
HLA-DPA1-241ENST00000417724 CADPSQ9ULU8 1353 aa15.23■□□□□ 0.03
HLA-DPA1-241ENST00000417724 TRIM41Q8WV44 630 aa15.17■□□□□ 0.02
HLA-DPA1-241ENST00000417724 MRC2Q9UBG0 1479 aa15.16■□□□□ 0.02
HLA-DPA1-241ENST00000417724 WDR62O43379 1518 aa15.12■□□□□ 0.01
HLA-DPA1-241ENST00000417724 WIZO95785 1651 aa15.1■□□□□ 0.01
HLA-DPA1-241ENST00000417724 CEP164Q9UPV0 1460 aa15.07■□□□□ 0
HLA-DPA1-241ENST00000417724 FANCD2Q9BXW9 1451 aa15.04■□□□□ -0
HLA-DPA1-241ENST00000417724 OSCARQ8IYS5 282 aa15.02■□□□□ -0
HLA-DPA1-241ENST00000417724 CFTRP13569 1480 aa15□□□□□ -0.01
HLA-DPA1-241ENST00000417724 RSF1Q96T23 1441 aaPredicted RBP14.93□□□□□ -0.02
HLA-DPA1-241ENST00000417724 URB2Q14146 1524 aaKnown RBP14.91□□□□□ -0.02
HLA-DPA1-241ENST00000417724 TOP2AP11388 1531 aaKnown RBP14.9□□□□□ -0.02
HLA-DPA1-241ENST00000417724 PRDM2Q13029 1718 aa14.81□□□□□ -0.04
HLA-DPA1-241ENST00000417724 IFT140Q96RY7 1462 aa14.78□□□□□ -0.04
HLA-DPA1-241ENST00000417724 RIMBP3CA6NJZ7 1639 aa14.76□□□□□ -0.05
HLA-DPA1-241ENST00000417724 RIMBP3BA6NNM3 1639 aa14.76□□□□□ -0.05
HLA-DPA1-241ENST00000417724 RIMBP3Q9UFD9 1639 aa14.76□□□□□ -0.05
HLA-DPA1-241ENST00000417724 ZNF608Q9ULD9 1512 aaPredicted RBP14.76□□□□□ -0.05
HLA-DPA1-241ENST00000417724 CCDC88BA6NC98 1476 aa14.76□□□□□ -0.05
HLA-DPA1-241ENST00000417724 ABCC8Q09428 1581 aa14.73□□□□□ -0.05
HLA-DPA1-241ENST00000417724 TOPBP1Q92547 1522 aa14.72□□□□□ -0.05
HLA-DPA1-241ENST00000417724 ARHGEF11O15085 1522 aa14.7□□□□□ -0.06
HLA-DPA1-241ENST00000417724 CYB5RLQ6IPT4 315 aa14.67□□□□□ -0.06
HLA-DPA1-241ENST00000417724 EIF4G3O43432 1585 aaKnown RBP14.64□□□□□ -0.07
HLA-DPA1-241ENST00000417724 DNMBPQ6XZF7 1577 aa14.64□□□□□ -0.07
HLA-DPA1-241ENST00000417724 AQRO60306 1485 aaKnown RBP eCLIP14.62□□□□□ -0.07
HLA-DPA1-241ENST00000417724 FBLN2P98095 1184 aa14.61□□□□□ -0.07
HLA-DPA1-241ENST00000417724 CHD1O14646 1710 aa14.6□□□□□ -0.07
HLA-DPA1-241ENST00000417724 TARBP1Q13395 1621 aaKnown RBP14.59□□□□□ -0.07
HLA-DPA1-241ENST00000417724 TRHP20396 242 aaPredicted RBP14.58□□□□□ -0.08
HLA-DPA1-241ENST00000417724 POLA1P09884 1462 aaPredicted RBP14.56□□□□□ -0.08
HLA-DPA1-241ENST00000417724 ARAP1Q96P48 1450 aa14.52□□□□□ -0.08
HLA-DPA1-241ENST00000417724 SOGA1O94964 1423 aa14.52□□□□□ -0.08
HLA-DPA1-241ENST00000417724 TDRD9Q8NDG6 1382 aaKnown RBP14.51□□□□□ -0.09
HLA-DPA1-241ENST00000417724 RAD54L2Q9Y4B4 1467 aa14.5□□□□□ -0.09
HLA-DPA1-241ENST00000417724 CHMP7Q8WUX9 453 aaPredicted RBP14.48□□□□□ -0.09
HLA-DPA1-241ENST00000417724 WDR97A6NE52 1622 aa14.44□□□□□ -0.1
HLA-DPA1-241ENST00000417724 SNAPC4Q5SXM2 1469 aa14.44□□□□□ -0.1
HLA-DPA1-241ENST00000417724 FGD5Q6ZNL6 1462 aa14.44□□□□□ -0.1
HLA-DPA1-241ENST00000417724 MAGI1Q96QZ7 1491 aaPredicted RBP14.42□□□□□ -0.1
HLA-DPA1-241ENST00000417724 SYNJ1O43426 1573 aa14.42□□□□□ -0.1
HLA-DPA1-241ENST00000417724 CLASP1Q7Z460 1538 aa14.41□□□□□ -0.1
HLA-DPA1-241ENST00000417724 GRIN2BQ13224 1484 aa14.4□□□□□ -0.1
HLA-DPA1-241ENST00000417724 CUX1P39880 1505 aa14.38□□□□□ -0.11
HLA-DPA1-241ENST00000417724 SYNJ2O15056 1496 aa14.38□□□□□ -0.11
HLA-DPA1-241ENST00000417724 GAPVD1Q14C86 1478 aa14.33□□□□□ -0.12
HLA-DPA1-241ENST00000417724 AEBP2Q6ZN18 517 aaPredicted RBP14.32□□□□□ -0.12
HLA-DPA1-241ENST00000417724 PBRM1Q86U86 1689 aa14.3□□□□□ -0.12
HLA-DPA1-241ENST00000417724 ABCA10Q8WWZ4 1543 aa14.26□□□□□ -0.13
HLA-DPA1-241ENST00000417724 ABCA5Q8WWZ7 1642 aa14.24□□□□□ -0.13
HLA-DPA1-241ENST00000417724 WRNQ14191 1432 aaPredicted RBP eCLIP14.21□□□□□ -0.13
HLA-DPA1-241ENST00000417724 GRIN2AQ12879 1464 aa14.2□□□□□ -0.14
HLA-DPA1-241ENST00000417724 SUPT5HO00267 1087 aaKnown RBP14.17□□□□□ -0.14
HLA-DPA1-241ENST00000417724 NUP160Q12769 1436 aa14.16□□□□□ -0.14
HLA-DPA1-241ENST00000417724 ERCC6L2Q5T890 1561 aa14.16□□□□□ -0.14
HLA-DPA1-241ENST00000417724 CEP170Q5SW79 1584 aa14.15□□□□□ -0.14
HLA-DPA1-241ENST00000417724 FHAD1B1AJZ9 1412 aa14.15□□□□□ -0.14
HLA-DPA1-241ENST00000417724 ADAMTS12P58397 1594 aa14.13□□□□□ -0.15
HLA-DPA1-241ENST00000417724 TOP2BQ02880 1626 aa14.11□□□□□ -0.15
HLA-DPA1-241ENST00000417724 SHROOM2Q13796 1616 aa14.11□□□□□ -0.15
HLA-DPA1-241ENST00000417724 BIVM-ERCC5R4GMW8 1640 aa14.1□□□□□ -0.15
HLA-DPA1-241ENST00000417724 ERICH3Q5RHP9 1530 aa14.09□□□□□ -0.15
HLA-DPA1-241ENST00000417724 JPH4Q96JJ6 628 aa14.08□□□□□ -0.16
HLA-DPA1-241ENST00000417724 PRG4Q92954 1404 aaPredicted RBP14.07□□□□□ -0.16
HLA-DPA1-241ENST00000417724 KIF13AQ9H1H9 1805 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms