RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 NISCHQ9Y2I1 1504 aa30.23■■■□□ 2.43
SKA1-203ENST00000417656 AEBP2Q6ZN18 517 aaPredicted RBP27.49■■□□□ 1.99
SKA1-203ENST00000417656 CCDC180Q9P1Z9 1646 aa26.89■■□□□ 1.9
SKA1-203ENST00000417656 ABCC9O60706 1549 aa26.14■■□□□ 1.78
SKA1-203ENST00000417656 CHIC1Q5VXU3 224 aa25.88■■□□□ 1.73
SKA1-203ENST00000417656 ZCCHC6Q5VYS8 1495 aaKnown RBP25.25■■□□□ 1.63
SKA1-203ENST00000417656 RB1CC1Q8TDY2 1594 aa25.2■■□□□ 1.62
SKA1-203ENST00000417656 NACADO15069 1562 aa25.18■■□□□ 1.62
SKA1-203ENST00000417656 DCAF8L2P0C7V8 631 aa25.11■■□□□ 1.61
SKA1-203ENST00000417656 MYO15BQ96JP2 1530 aa25.06■■□□□ 1.6
SKA1-203ENST00000417656 DCAF1Q9Y4B6 1507 aa25.01■■□□□ 1.59
SKA1-203ENST00000417656 UNC13AQ9UPW8 1703 aa24.72■■□□□ 1.55
SKA1-203ENST00000417656 SCRIBQ14160 1630 aa24.56■■□□□ 1.52
SKA1-203ENST00000417656 BICRAQ9NZM4 1560 aa24.46■■□□□ 1.51
SKA1-203ENST00000417656 PABPN1Q86U42 306 aaKnown RBP eCLIP24.38■■□□□ 1.49
SKA1-203ENST00000417656 SHROOM4Q9ULL8 1493 aa24.18■■□□□ 1.46
SKA1-203ENST00000417656 EIF4G1Q04637 1599 aaKnown RBP23.79■■□□□ 1.4
SKA1-203ENST00000417656 DNAJC5BQ9UF47 199 aa23.79■■□□□ 1.4
SKA1-203ENST00000417656 CC2D2AQ9P2K1 1620 aa23.67■■□□□ 1.38
SKA1-203ENST00000417656 CECR2Q9BXF3 1484 aa23.55■■□□□ 1.36
SKA1-203ENST00000417656 SENP3Q9H4L4 574 aaPredicted RBP23.49■■□□□ 1.35
SKA1-203ENST00000417656 SMARCA4P51532 1647 aa23.48■■□□□ 1.35
SKA1-203ENST00000417656 BAZ1AQ9NRL2 1556 aaPredicted RBP23.44■■□□□ 1.34
SKA1-203ENST00000417656 MROH2BQ7Z745 1585 aa23.32■■□□□ 1.32
SKA1-203ENST00000417656 ATAD2BQ9ULI0 1458 aa23.27■■□□□ 1.32
SKA1-203ENST00000417656 SMARCA2P51531 1590 aa23.26■■□□□ 1.31
SKA1-203ENST00000417656 PEG3Q9GZU2 1588 aa23.22■■□□□ 1.31
SKA1-203ENST00000417656 NCAPD3P42695 1498 aa23.19■■□□□ 1.3
SKA1-203ENST00000417656 HMGXB3Q12766 1538 aa23.17■■□□□ 1.3
SKA1-203ENST00000417656 PHF23Q9BUL5 403 aaPredicted RBP23.14■■□□□ 1.29
SKA1-203ENST00000417656 WIZO95785 1651 aa23.11■■□□□ 1.29
SKA1-203ENST00000417656 BAZ1BQ9UIG0 1483 aaKnown RBP23.11■■□□□ 1.29
SKA1-203ENST00000417656 RSF1Q96T23 1441 aaPredicted RBP23.06■■□□□ 1.28
SKA1-203ENST00000417656 TOP2AP11388 1531 aaKnown RBP22.87■■□□□ 1.25
SKA1-203ENST00000417656 NESP48681 1621 aa22.67■■□□□ 1.22
SKA1-203ENST00000417656 LAMC3Q9Y6N6 1575 aa22.62■■□□□ 1.21
SKA1-203ENST00000417656 CCDC88BA6NC98 1476 aa22.54■■□□□ 1.2
SKA1-203ENST00000417656 SUPT5HO00267 1087 aaKnown RBP22.54■■□□□ 1.2
SKA1-203ENST00000417656 CADPSQ9ULU8 1353 aa22.52■■□□□ 1.2
SKA1-203ENST00000417656 ERCC6Q03468 1493 aa22.51■■□□□ 1.19
SKA1-203ENST00000417656 KIF21AQ7Z4S6 1674 aa22.46■■□□□ 1.19
SKA1-203ENST00000417656 CFTRP13569 1480 aa22.44■■□□□ 1.18
SKA1-203ENST00000417656 PRDM2Q13029 1718 aa22.41■■□□□ 1.18
SKA1-203ENST00000417656 PDS5BQ9NTI5 1447 aa22.4■■□□□ 1.18
SKA1-203ENST00000417656 THOC2Q8NI27 1593 aaKnown RBP22.35■■□□□ 1.17
SKA1-203ENST00000417656 FANCD2Q9BXW9 1451 aa22.31■■□□□ 1.16
SKA1-203ENST00000417656 CEP164Q9UPV0 1460 aa22.29■■□□□ 1.16
SKA1-203ENST00000417656 MRC2Q9UBG0 1479 aa22.22■■□□□ 1.15
SKA1-203ENST00000417656 CUX2O14529 1486 aa22.22■■□□□ 1.15
SKA1-203ENST00000417656 WDR62O43379 1518 aa22.17■■□□□ 1.14
SKA1-203ENST00000417656 URB2Q14146 1524 aaKnown RBP22.11■■□□□ 1.13
SKA1-203ENST00000417656 DNMBPQ6XZF7 1577 aa21.99■■□□□ 1.11
SKA1-203ENST00000417656 TOPBP1Q92547 1522 aa21.99■■□□□ 1.11
SKA1-203ENST00000417656 ABCC8Q09428 1581 aa21.93■■□□□ 1.1
SKA1-203ENST00000417656 FOXD1Q16676 465 aa21.92■■□□□ 1.1
SKA1-203ENST00000417656 CUX1P39880 1505 aa21.89■■□□□ 1.09
SKA1-203ENST00000417656 POLA1P09884 1462 aaPredicted RBP21.81■■□□□ 1.08
SKA1-203ENST00000417656 IFT140Q96RY7 1462 aa21.79■■□□□ 1.08
SKA1-203ENST00000417656 FGD5Q6ZNL6 1462 aa21.78■■□□□ 1.08
SKA1-203ENST00000417656 SYNJ1O43426 1573 aa21.76■■□□□ 1.07
SKA1-203ENST00000417656 TARBP1Q13395 1621 aaKnown RBP21.76■■□□□ 1.07
SKA1-203ENST00000417656 BIVM-ERCC5R4GMW8 1640 aa21.76■■□□□ 1.07
SKA1-203ENST00000417656 WRNQ14191 1432 aaPredicted RBP eCLIP21.75■■□□□ 1.07
SKA1-203ENST00000417656 TOP2BQ02880 1626 aa21.73■■□□□ 1.07
SKA1-203ENST00000417656 ZNF608Q9ULD9 1512 aaPredicted RBP21.71■■□□□ 1.07
SKA1-203ENST00000417656 RAD54L2Q9Y4B4 1467 aa21.71■■□□□ 1.07
SKA1-203ENST00000417656 EIF4G3O43432 1585 aaKnown RBP21.69■■□□□ 1.06
SKA1-203ENST00000417656 WDR97A6NE52 1622 aa21.67■■□□□ 1.06
SKA1-203ENST00000417656 SOGA1O94964 1423 aa21.66■■□□□ 1.06
SKA1-203ENST00000417656 AQRO60306 1485 aaKnown RBP eCLIP21.57■■□□□ 1.041e-7■■■□□ 15.7
SKA1-203ENST00000417656 ABCA10Q8WWZ4 1543 aa21.55■■□□□ 1.04
SKA1-203ENST00000417656 TDRD9Q8NDG6 1382 aaKnown RBP21.53■■□□□ 1.04
SKA1-203ENST00000417656 ABCA5Q8WWZ7 1642 aa21.52■■□□□ 1.04
SKA1-203ENST00000417656 PBRM1Q86U86 1689 aa21.5■■□□□ 1.03
SKA1-203ENST00000417656 GAPVD1Q14C86 1478 aa21.45■■□□□ 1.02
SKA1-203ENST00000417656 GRIN2BQ13224 1484 aa21.43■■□□□ 1.02
SKA1-203ENST00000417656 SNAPC4Q5SXM2 1469 aa21.42■■□□□ 1.02
SKA1-203ENST00000417656 CHD1O14646 1710 aa21.4■■□□□ 1.02
SKA1-203ENST00000417656 MAGI1Q96QZ7 1491 aaPredicted RBP21.37■■□□□ 1.01
SKA1-203ENST00000417656 ADAMTS12P58397 1594 aa21.32■■□□□ 1
SKA1-203ENST00000417656 ERICH3Q5RHP9 1530 aa21.3■■□□□ 1
SKA1-203ENST00000417656 SYNJ2O15056 1496 aa21.28■■□□□ 1
SKA1-203ENST00000417656 DNAJC5Q9H3Z4 198 aa21.28■■□□□ 1
SKA1-203ENST00000417656 KIF27Q86VH2 1401 aa21.27■■□□□ 1
SKA1-203ENST00000417656 TRIM41Q8WV44 630 aa21.25■□□□□ 0.99
SKA1-203ENST00000417656 FBLN2P98095 1184 aa21.24■□□□□ 0.99
SKA1-203ENST00000417656 OSCARQ8IYS5 282 aa21.21■□□□□ 0.99
SKA1-203ENST00000417656 FHAD1B1AJZ9 1412 aa21.2■□□□□ 0.98
SKA1-203ENST00000417656 CUL7Q14999 1698 aa21.18■□□□□ 0.98
SKA1-203ENST00000417656 CHMP7Q8WUX9 453 aaPredicted RBP21.18■□□□□ 0.98
SKA1-203ENST00000417656 GRIN2AQ12879 1464 aa21.18■□□□□ 0.98
SKA1-203ENST00000417656 RUSC2Q8N2Y8 1516 aa21.15■□□□□ 0.98
SKA1-203ENST00000417656 CLASP1Q7Z460 1538 aa21.14■□□□□ 0.97
SKA1-203ENST00000417656 IGF1RP08069 1367 aa21.13■□□□□ 0.97
SKA1-203ENST00000417656 CEP170Q5SW79 1584 aa21.1■□□□□ 0.97
SKA1-203ENST00000417656 NUP160Q12769 1436 aa21.06■□□□□ 0.96
SKA1-203ENST00000417656 CARMIL1Q5VZK9 1371 aa21.02■□□□□ 0.96
SKA1-203ENST00000417656 RIMBP3CA6NJZ7 1639 aa21.01■□□□□ 0.95
SKA1-203ENST00000417656 RIMBP3BA6NNM3 1639 aa21.01■□□□□ 0.95
SKA1-203ENST00000417656 RIMBP3Q9UFD9 1639 aa21.01■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms