RNA–Protein interactions for RNA: ENST00000417521.5

DDR1-231, Transcript of discoidin domain receptor tyrosine kinase 1, human

TSL 5

Gene DDR1, Length 1,479 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDR1-231	ENST00000417521	NISCH	Q9Y2I1	1504 aa		40.08	■■■■■ 4.01
DDR1-231	ENST00000417521	CCDC180	Q9P1Z9	1646 aa		35.62	■■■■□ 3.29
DDR1-231	ENST00000417521	ABCC9	O60706	1549 aa		35.23	■■■■□ 3.23
DDR1-231	ENST00000417521	RB1CC1	Q8TDY2	1594 aa		33.74	■■■□□ 2.99
DDR1-231	ENST00000417521	DCAF8L2	P0C7V8	631 aa		33.69	■■■□□ 2.98
DDR1-231	ENST00000417521	NACAD	O15069	1562 aa		33.67	■■■□□ 2.98
DDR1-231	ENST00000417521	MYO15B	Q96JP2	1530 aa		33.43	■■■□□ 2.94
DDR1-231	ENST00000417521	ZCCHC6	Q5VYS8	1495 aa	Known RBP	33.32	■■■□□ 2.92
DDR1-231	ENST00000417521	DCAF1	Q9Y4B6	1507 aa		33.16	■■■□□ 2.9
DDR1-231	ENST00000417521	PABPN1	Q86U42	306 aa	Known RBP eCLIP	32.95	■■■□□ 2.87
DDR1-231	ENST00000417521	DNAJC5B	Q9UF47	199 aa		32.82	■■■□□ 2.84
DDR1-231	ENST00000417521	UNC13A	Q9UPW8	1703 aa		32.76	■■■□□ 2.83
DDR1-231	ENST00000417521	BICRA	Q9NZM4	1560 aa		32.71	■■■□□ 2.83
DDR1-231	ENST00000417521	SCRIB	Q14160	1630 aa		32.5	■■■□□ 2.79
DDR1-231	ENST00000417521	SHROOM4	Q9ULL8	1493 aa		32.43	■■■□□ 2.78
DDR1-231	ENST00000417521	EIF4G1	Q04637	1599 aa	Known RBP	31.89	■■■□□ 2.7
DDR1-231	ENST00000417521	CC2D2A	Q9P2K1	1620 aa		31.8	■■■□□ 2.68
DDR1-231	ENST00000417521	CECR2	Q9BXF3	1484 aa		31.72	■■■□□ 2.67
DDR1-231	ENST00000417521	DNAJC5	Q9H3Z4	198 aa		31.14	■■■□□ 2.58
DDR1-231	ENST00000417521	NCAPD3	P42695	1498 aa		31.14	■■■□□ 2.58
DDR1-231	ENST00000417521	ATAD2B	Q9ULI0	1458 aa		31.08	■■■□□ 2.57
DDR1-231	ENST00000417521	SMARCA4	P51532	1647 aa		31.08	■■■□□ 2.57
DDR1-231	ENST00000417521	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	31.07	■■■□□ 2.56
DDR1-231	ENST00000417521	SMARCA2	P51531	1590 aa		30.99	■■■□□ 2.55
DDR1-231	ENST00000417521	HMGXB3	Q12766	1538 aa		30.88	■■■□□ 2.53
DDR1-231	ENST00000417521	MROH2B	Q7Z745	1585 aa		30.87	■■■□□ 2.53
DDR1-231	ENST00000417521	PEG3	Q9GZU2	1588 aa		30.83	■■■□□ 2.53
DDR1-231	ENST00000417521	BAZ1B	Q9UIG0	1483 aa	Known RBP	30.78	■■■□□ 2.52
DDR1-231	ENST00000417521	RSF1	Q96T23	1441 aa	Predicted RBP	30.48	■■■□□ 2.47
DDR1-231	ENST00000417521	WIZ	O95785	1651 aa		30.43	■■■□□ 2.46
DDR1-231	ENST00000417521	ERCC6	Q03468	1493 aa		30.4	■■■□□ 2.46
DDR1-231	ENST00000417521	NES	P48681	1621 aa		30.39	■■■□□ 2.46
DDR1-231	ENST00000417521	LAMC3	Q9Y6N6	1575 aa		30.27	■■■□□ 2.44
DDR1-231	ENST00000417521	CADPS	Q9ULU8	1353 aa		30.24	■■■□□ 2.43
DDR1-231	ENST00000417521	CUX2	O14529	1486 aa		30.19	■■■□□ 2.42
DDR1-231	ENST00000417521	PDS5B	Q9NTI5	1447 aa		30.17	■■■□□ 2.42
DDR1-231	ENST00000417521	TOP2A	P11388	1531 aa	Known RBP	30.16	■■■□□ 2.42
DDR1-231	ENST00000417521	CFTR	P13569	1480 aa		29.96	■■■□□ 2.39
DDR1-231	ENST00000417521	THOC2	Q8NI27	1593 aa	Known RBP	29.92	■■■□□ 2.38
DDR1-231	ENST00000417521	KIF21A	Q7Z4S6	1674 aa		29.88	■■■□□ 2.37
DDR1-231	ENST00000417521	CCDC88B	A6NC98	1476 aa		29.86	■■■□□ 2.37
DDR1-231	ENST00000417521	FANCD2	Q9BXW9	1451 aa		29.83	■■■□□ 2.37
DDR1-231	ENST00000417521	MRC2	Q9UBG0	1479 aa		29.82	■■■□□ 2.36
DDR1-231	ENST00000417521	CEP164	Q9UPV0	1460 aa		29.8	■■■□□ 2.36
DDR1-231	ENST00000417521	WDR62	O43379	1518 aa		29.7	■■■□□ 2.34
DDR1-231	ENST00000417521	SUPT5H	O00267	1087 aa	Known RBP	29.53	■■■□□ 2.32
DDR1-231	ENST00000417521	URB2	Q14146	1524 aa	Known RBP	29.52	■■■□□ 2.32
DDR1-231	ENST00000417521	PRDM2	Q13029	1718 aa		29.42	■■■□□ 2.3
DDR1-231	ENST00000417521	ABCC8	Q09428	1581 aa		29.33	■■■□□ 2.29
DDR1-231	ENST00000417521	TOPBP1	Q92547	1522 aa		29.3	■■■□□ 2.28
DDR1-231	ENST00000417521	TRIM41	Q8WV44	630 aa		29.29	■■■□□ 2.28
DDR1-231	ENST00000417521	IFT140	Q96RY7	1462 aa		29.22	■■■□□ 2.27
DDR1-231	ENST00000417521	DNMBP	Q6XZF7	1577 aa		29.21	■■■□□ 2.27
DDR1-231	ENST00000417521	ZNF608	Q9ULD9	1512 aa	Predicted RBP	29.07	■■■□□ 2.24
DDR1-231	ENST00000417521	POLA1	P09884	1462 aa	Predicted RBP	29.04	■■■□□ 2.24
DDR1-231	ENST00000417521	OSCAR	Q8IYS5	282 aa		28.98	■■■□□ 2.23
DDR1-231	ENST00000417521	SOGA1	O94964	1423 aa		28.97	■■■□□ 2.23
DDR1-231	ENST00000417521	CUX1	P39880	1505 aa		28.96	■■■□□ 2.23
DDR1-231	ENST00000417521	TARBP1	Q13395	1621 aa	Known RBP	28.95	■■■□□ 2.22
DDR1-231	ENST00000417521	RAD54L2	Q9Y4B4	1467 aa		28.93	■■■□□ 2.22
DDR1-231	ENST00000417521	AQR	O60306	1485 aa	Known RBP eCLIP	28.92	■■■□□ 2.22	5e-8	■■■■■ 51
DDR1-231	ENST00000417521	FGD5	Q6ZNL6	1462 aa		28.92	■■■□□ 2.22
DDR1-231	ENST00000417521	EIF4G3	O43432	1585 aa	Known RBP	28.86	■■■□□ 2.21
DDR1-231	ENST00000417521	TDRD9	Q8NDG6	1382 aa	Known RBP	28.85	■■■□□ 2.21
DDR1-231	ENST00000417521	WRN	Q14191	1432 aa	Predicted RBP eCLIP	28.74	■■■□□ 2.19
DDR1-231	ENST00000417521	WDR97	A6NE52	1622 aa		28.72	■■■□□ 2.19
DDR1-231	ENST00000417521	FBLN2	P98095	1184 aa		28.66	■■■□□ 2.18
DDR1-231	ENST00000417521	ABCA10	Q8WWZ4	1543 aa		28.66	■■■□□ 2.18
DDR1-231	ENST00000417521	GRIN2B	Q13224	1484 aa		28.65	■■■□□ 2.18
DDR1-231	ENST00000417521	TOP2B	Q02880	1626 aa		28.62	■■■□□ 2.17
DDR1-231	ENST00000417521	SNAPC4	Q5SXM2	1469 aa		28.6	■■■□□ 2.17
DDR1-231	ENST00000417521	GAPVD1	Q14C86	1478 aa		28.6	■■■□□ 2.17
DDR1-231	ENST00000417521	MAGI1	Q96QZ7	1491 aa	Predicted RBP	28.58	■■■□□ 2.17
DDR1-231	ENST00000417521	SYNJ1	O43426	1573 aa		28.57	■■■□□ 2.16
DDR1-231	ENST00000417521	CHMP7	Q8WUX9	453 aa	Predicted RBP	28.57	■■■□□ 2.16
DDR1-231	ENST00000417521	BIVM-ERCC5	R4GMW8	1640 aa		28.56	■■■□□ 2.16
DDR1-231	ENST00000417521	SYNJ2	O15056	1496 aa		28.48	■■■□□ 2.15
DDR1-231	ENST00000417521	ABCA5	Q8WWZ7	1642 aa		28.47	■■■□□ 2.15
DDR1-231	ENST00000417521	CHD1	O14646	1710 aa		28.46	■■■□□ 2.15
DDR1-231	ENST00000417521	ARHGEF11	O15085	1522 aa		28.39	■■■□□ 2.14
DDR1-231	ENST00000417521	PBRM1	Q86U86	1689 aa		28.36	■■■□□ 2.13
DDR1-231	ENST00000417521	RIMBP3C	A6NJZ7	1639 aa		28.36	■■■□□ 2.13
DDR1-231	ENST00000417521	RIMBP3B	A6NNM3	1639 aa		28.36	■■■□□ 2.13
DDR1-231	ENST00000417521	RIMBP3	Q9UFD9	1639 aa		28.36	■■■□□ 2.13
DDR1-231	ENST00000417521	CLASP1	Q7Z460	1538 aa		28.29	■■■□□ 2.12
DDR1-231	ENST00000417521	ERICH3	Q5RHP9	1530 aa		28.29	■■■□□ 2.12
DDR1-231	ENST00000417521	FHAD1	B1AJZ9	1412 aa		28.28	■■■□□ 2.12
DDR1-231	ENST00000417521	CYB5RL	Q6IPT4	315 aa		28.25	■■■□□ 2.11
DDR1-231	ENST00000417521	GRIN2A	Q12879	1464 aa		28.24	■■■□□ 2.11
DDR1-231	ENST00000417521	ADAMTS12	P58397	1594 aa		28.22	■■■□□ 2.11
DDR1-231	ENST00000417521	KIF27	Q86VH2	1401 aa		28.18	■■■□□ 2.1
DDR1-231	ENST00000417521	ARAP1	Q96P48	1450 aa		28.16	■■■□□ 2.1
DDR1-231	ENST00000417521	NUP160	Q12769	1436 aa		28.16	■■■□□ 2.1
DDR1-231	ENST00000417521	IGF1R	P08069	1367 aa		28.13	■■■□□ 2.09
DDR1-231	ENST00000417521	CEP170	Q5SW79	1584 aa		28.06	■■■□□ 2.08
DDR1-231	ENST00000417521	JPH4	Q96JJ6	628 aa		27.95	■■■□□ 2.06
DDR1-231	ENST00000417521	CARMIL1	Q5VZK9	1371 aa		27.94	■■■□□ 2.06
DDR1-231	ENST00000417521	CUL7	Q14999	1698 aa		27.9	■■■□□ 2.06
DDR1-231	ENST00000417521	AEBP2	Q6ZN18	517 aa	Predicted RBP	27.89	■■■□□ 2.06
DDR1-231	ENST00000417521	SHROOM2	Q13796	1616 aa		27.88	■■■□□ 2.05

Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms