RNA–Protein interactions for RNA: ENST00000417508.1

VPS16-204, Transcript of VPS16, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS16, Length 819 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS16-204ENST00000417508 NISCHQ9Y2I1 1504 aa45.64■■■■■ 4.9
VPS16-204ENST00000417508 CCDC180Q9P1Z9 1646 aa40.83■■■■■ 4.13
VPS16-204ENST00000417508 ABCC9O60706 1549 aa40.51■■■■■ 4.08
VPS16-204ENST00000417508 RB1CC1Q8TDY2 1594 aa38.76■■■■□ 3.8
VPS16-204ENST00000417508 NACADO15069 1562 aa38.59■■■■□ 3.77
VPS16-204ENST00000417508 DCAF8L2P0C7V8 631 aa38.43■■■■□ 3.74
VPS16-204ENST00000417508 MYO15BQ96JP2 1530 aa38.19■■■■□ 3.7
VPS16-204ENST00000417508 ZCCHC6Q5VYS8 1495 aaKnown RBP37.84■■■■□ 3.65
VPS16-204ENST00000417508 UNC13AQ9UPW8 1703 aa37.79■■■■□ 3.64
VPS16-204ENST00000417508 DCAF1Q9Y4B6 1507 aa37.78■■■■□ 3.64
VPS16-204ENST00000417508 PABPN1Q86U42 306 aaKnown RBP eCLIP37.78■■■■□ 3.64
VPS16-204ENST00000417508 DNAJC5BQ9UF47 199 aa37.78■■■■□ 3.64
VPS16-204ENST00000417508 BICRAQ9NZM4 1560 aa37.55■■■■□ 3.6
VPS16-204ENST00000417508 SHROOM4Q9ULL8 1493 aa37.2■■■■□ 3.55
VPS16-204ENST00000417508 SCRIBQ14160 1630 aa37.13■■■■□ 3.53
VPS16-204ENST00000417508 CC2D2AQ9P2K1 1620 aa36.63■■■■□ 3.45
VPS16-204ENST00000417508 EIF4G1Q04637 1599 aaKnown RBP36.62■■■■□ 3.45
VPS16-204ENST00000417508 CECR2Q9BXF3 1484 aa36.5■■■■□ 3.43
VPS16-204ENST00000417508 NCAPD3P42695 1498 aa35.63■■■■□ 3.29
VPS16-204ENST00000417508 ATAD2BQ9ULI0 1458 aa35.51■■■■□ 3.28
VPS16-204ENST00000417508 SMARCA4P51532 1647 aa35.5■■■■□ 3.27
VPS16-204ENST00000417508 SMARCA2P51531 1590 aa35.46■■■■□ 3.27
VPS16-204ENST00000417508 BAZ1AQ9NRL2 1556 aaPredicted RBP35.42■■■■□ 3.26
VPS16-204ENST00000417508 HMGXB3Q12766 1538 aa35.34■■■■□ 3.25
VPS16-204ENST00000417508 PEG3Q9GZU2 1588 aa35.21■■■■□ 3.23
VPS16-204ENST00000417508 BAZ1BQ9UIG0 1483 aaKnown RBP35.17■■■■□ 3.22
VPS16-204ENST00000417508 MROH2BQ7Z745 1585 aa35.12■■■■□ 3.21
VPS16-204ENST00000417508 ERCC6Q03468 1493 aa35■■■■□ 3.19
VPS16-204ENST00000417508 CUX2O14529 1486 aa34.89■■■■□ 3.18
VPS16-204ENST00000417508 NESP48681 1621 aa34.85■■■■□ 3.17
VPS16-204ENST00000417508 LAMC3Q9Y6N6 1575 aa34.75■■■■□ 3.15
VPS16-204ENST00000417508 WIZO95785 1651 aa34.7■■■■□ 3.14
VPS16-204ENST00000417508 DNAJC5Q9H3Z4 198 aa34.61■■■■□ 3.13
VPS16-204ENST00000417508 PDS5BQ9NTI5 1447 aa34.59■■■■□ 3.13
VPS16-204ENST00000417508 CADPSQ9ULU8 1353 aa34.56■■■■□ 3.12
VPS16-204ENST00000417508 RSF1Q96T23 1441 aaPredicted RBP34.54■■■■□ 3.12
VPS16-204ENST00000417508 THOC2Q8NI27 1593 aaKnown RBP34.45■■■■□ 3.1
VPS16-204ENST00000417508 KIF21AQ7Z4S6 1674 aa34.41■■■■□ 3.1
VPS16-204ENST00000417508 TOP2AP11388 1531 aaKnown RBP34.31■■■■□ 3.08
VPS16-204ENST00000417508 CFTRP13569 1480 aa34.2■■■■□ 3.06
VPS16-204ENST00000417508 MRC2Q9UBG0 1479 aa34.2■■■■□ 3.06
VPS16-204ENST00000417508 CEP164Q9UPV0 1460 aa34.12■■■■□ 3.05
VPS16-204ENST00000417508 FANCD2Q9BXW9 1451 aa34.11■■■■□ 3.05
VPS16-204ENST00000417508 WDR62O43379 1518 aa34.09■■■■□ 3.05
VPS16-204ENST00000417508 CCDC88BA6NC98 1476 aa33.95■■■■□ 3.02
VPS16-204ENST00000417508 PRDM2Q13029 1718 aa33.84■■■■□ 3.01
VPS16-204ENST00000417508 URB2Q14146 1524 aaKnown RBP33.78■■■■□ 3
VPS16-204ENST00000417508 ABCC8Q09428 1581 aa33.55■■■□□ 2.96
VPS16-204ENST00000417508 TOPBP1Q92547 1522 aa33.49■■■□□ 2.95
VPS16-204ENST00000417508 IFT140Q96RY7 1462 aa33.46■■■□□ 2.95
VPS16-204ENST00000417508 OSCARQ8IYS5 282 aa33.42■■■□□ 2.94
VPS16-204ENST00000417508 DNMBPQ6XZF7 1577 aa33.39■■■□□ 2.94
VPS16-204ENST00000417508 ZNF608Q9ULD9 1512 aaPredicted RBP33.3■■■□□ 2.92
VPS16-204ENST00000417508 SUPT5HO00267 1087 aaKnown RBP33.21■■■□□ 2.91
VPS16-204ENST00000417508 POLA1P09884 1462 aaPredicted RBP33.15■■■□□ 2.9
VPS16-204ENST00000417508 TARBP1Q13395 1621 aaKnown RBP33.15■■■□□ 2.9
VPS16-204ENST00000417508 EIF4G3O43432 1585 aaKnown RBP33.12■■■□□ 2.89
VPS16-204ENST00000417508 TRIM41Q8WV44 630 aa33.1■■■□□ 2.89
VPS16-204ENST00000417508 AQRO60306 1485 aaKnown RBP eCLIP33.07■■■□□ 2.88
VPS16-204ENST00000417508 SOGA1O94964 1423 aa33.07■■■□□ 2.88
VPS16-204ENST00000417508 RAD54L2Q9Y4B4 1467 aa33■■■□□ 2.87
VPS16-204ENST00000417508 FGD5Q6ZNL6 1462 aa32.98■■■□□ 2.87
VPS16-204ENST00000417508 CUX1P39880 1505 aa32.97■■■□□ 2.87
VPS16-204ENST00000417508 TDRD9Q8NDG6 1382 aaKnown RBP32.93■■■□□ 2.86
VPS16-204ENST00000417508 WDR97A6NE52 1622 aa32.92■■■□□ 2.86
VPS16-204ENST00000417508 FBLN2P98095 1184 aa32.84■■■□□ 2.85
VPS16-204ENST00000417508 CHD1O14646 1710 aa32.82■■■□□ 2.85
VPS16-204ENST00000417508 RIMBP3CA6NJZ7 1639 aa32.8■■■□□ 2.84
VPS16-204ENST00000417508 RIMBP3BA6NNM3 1639 aa32.8■■■□□ 2.84
VPS16-204ENST00000417508 RIMBP3Q9UFD9 1639 aa32.8■■■□□ 2.84
VPS16-204ENST00000417508 ARHGEF11O15085 1522 aa32.75■■■□□ 2.83
VPS16-204ENST00000417508 GRIN2BQ13224 1484 aa32.74■■■□□ 2.83
VPS16-204ENST00000417508 SNAPC4Q5SXM2 1469 aa32.72■■■□□ 2.83
VPS16-204ENST00000417508 MAGI1Q96QZ7 1491 aaPredicted RBP32.72■■■□□ 2.83
VPS16-204ENST00000417508 CHMP7Q8WUX9 453 aaPredicted RBP32.69■■■□□ 2.82
VPS16-204ENST00000417508 ABCA10Q8WWZ4 1543 aa32.67■■■□□ 2.82
VPS16-204ENST00000417508 GAPVD1Q14C86 1478 aa32.65■■■□□ 2.82
VPS16-204ENST00000417508 WRNQ14191 1432 aaPredicted RBP eCLIP32.62■■■□□ 2.81
VPS16-204ENST00000417508 SYNJ2O15056 1496 aa32.59■■■□□ 2.81
VPS16-204ENST00000417508 TOP2BQ02880 1626 aa32.56■■■□□ 2.8
VPS16-204ENST00000417508 CYB5RLQ6IPT4 315 aa32.55■■■□□ 2.8
VPS16-204ENST00000417508 BIVM-ERCC5R4GMW8 1640 aa32.55■■■□□ 2.8
VPS16-204ENST00000417508 PBRM1Q86U86 1689 aa32.54■■■□□ 2.8
VPS16-204ENST00000417508 SYNJ1O43426 1573 aa32.53■■■□□ 2.8
VPS16-204ENST00000417508 ABCA5Q8WWZ7 1642 aa32.53■■■□□ 2.8
VPS16-204ENST00000417508 CLASP1Q7Z460 1538 aa32.48■■■□□ 2.79
VPS16-204ENST00000417508 ARAP1Q96P48 1450 aa32.42■■■□□ 2.78
VPS16-204ENST00000417508 GRIN2AQ12879 1464 aa32.29■■■□□ 2.76
VPS16-204ENST00000417508 FHAD1B1AJZ9 1412 aa32.27■■■□□ 2.76
VPS16-204ENST00000417508 ERICH3Q5RHP9 1530 aa32.27■■■□□ 2.76
VPS16-204ENST00000417508 ADAMTS12P58397 1594 aa32.25■■■□□ 2.75
VPS16-204ENST00000417508 NUP160Q12769 1436 aa32.18■■■□□ 2.74
VPS16-204ENST00000417508 CEP170Q5SW79 1584 aa32.11■■■□□ 2.73
VPS16-204ENST00000417508 TRHP20396 242 aaPredicted RBP32.1■■■□□ 2.73
VPS16-204ENST00000417508 SHROOM2Q13796 1616 aa31.99■■■□□ 2.71
VPS16-204ENST00000417508 KIF27Q86VH2 1401 aa31.99■■■□□ 2.71
VPS16-204ENST00000417508 IGF1RP08069 1367 aa31.94■■■□□ 2.7
VPS16-204ENST00000417508 ERCC6L2Q5T890 1561 aa31.94■■■□□ 2.7
VPS16-204ENST00000417508 JPH4Q96JJ6 628 aa31.93■■■□□ 2.7
VPS16-204ENST00000417508 PRG4Q92954 1404 aaPredicted RBP31.85■■■□□ 2.69
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms