RNA–Protein interactions for RNA: ENST00000417300.1

GABRE-202, Transcript of gamma-aminobutyric acid type A receptor epsilon subunit, humanhuman

TSL 2

Gene GABRE, Length 619 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GABRE-202ENST00000417300 NISCHQ9Y2I1 1504 aa27.36■■□□□ 1.97
GABRE-202ENST00000417300 ABCC9O60706 1549 aa25.62■■□□□ 1.69
GABRE-202ENST00000417300 DNAJC5BQ9UF47 199 aa25.14■■□□□ 1.62
GABRE-202ENST00000417300 CCDC180Q9P1Z9 1646 aa24.31■■□□□ 1.48
GABRE-202ENST00000417300 DNAJC5Q9H3Z4 198 aa24.02■■□□□ 1.44
GABRE-202ENST00000417300 RB1CC1Q8TDY2 1594 aa23.81■■□□□ 1.4
GABRE-202ENST00000417300 PABPN1Q86U42 306 aaKnown RBP eCLIP23.72■■□□□ 1.39
GABRE-202ENST00000417300 NACADO15069 1562 aa23.34■■□□□ 1.33
GABRE-202ENST00000417300 CECR2Q9BXF3 1484 aa23.21■■□□□ 1.31
GABRE-202ENST00000417300 DCAF8L2P0C7V8 631 aa23.16■■□□□ 1.3
GABRE-202ENST00000417300 UNC13AQ9UPW8 1703 aa23.16■■□□□ 1.3
GABRE-202ENST00000417300 BICRAQ9NZM4 1560 aa23.1■■□□□ 1.29
GABRE-202ENST00000417300 CC2D2AQ9P2K1 1620 aa23.03■■□□□ 1.28
GABRE-202ENST00000417300 ZCCHC6Q5VYS8 1495 aaKnown RBP22.98■■□□□ 1.27
GABRE-202ENST00000417300 DCAF1Q9Y4B6 1507 aa22.71■■□□□ 1.23
GABRE-202ENST00000417300 SHROOM4Q9ULL8 1493 aa22.68■■□□□ 1.22
GABRE-202ENST00000417300 EIF4G1Q04637 1599 aaKnown RBP22.67■■□□□ 1.22
GABRE-202ENST00000417300 MYO15BQ96JP2 1530 aa22.57■■□□□ 1.2
GABRE-202ENST00000417300 CUX2O14529 1486 aa22.56■■□□□ 1.2
GABRE-202ENST00000417300 TRIM41Q8WV44 630 aa22.52■■□□□ 1.2
GABRE-202ENST00000417300 ERCC6Q03468 1493 aa22.24■■□□□ 1.15
GABRE-202ENST00000417300 SCRIBQ14160 1630 aa22.15■■□□□ 1.14
GABRE-202ENST00000417300 NESP48681 1621 aa21.63■■□□□ 1.05
GABRE-202ENST00000417300 THOC2Q8NI27 1593 aaKnown RBP21.58■■□□□ 1.05
GABRE-202ENST00000417300 NCAPD3P42695 1498 aa21.58■■□□□ 1.04
GABRE-202ENST00000417300 AEBP2Q6ZN18 517 aaPredicted RBP21.55■■□□□ 1.04
GABRE-202ENST00000417300 OSCARQ8IYS5 282 aa21.44■■□□□ 1.02
GABRE-202ENST00000417300 SMARCA2P51531 1590 aa21.42■■□□□ 1.02
GABRE-202ENST00000417300 ATAD2BQ9ULI0 1458 aa21.34■■□□□ 1.01
GABRE-202ENST00000417300 BAZ1AQ9NRL2 1556 aaPredicted RBP21.31■■□□□ 1
GABRE-202ENST00000417300 PDS5BQ9NTI5 1447 aa21.26■□□□□ 0.99
GABRE-202ENST00000417300 LAMC3Q9Y6N6 1575 aa21.26■□□□□ 0.99
GABRE-202ENST00000417300 HMGXB3Q12766 1538 aa21.25■□□□□ 0.99
GABRE-202ENST00000417300 KIF21AQ7Z4S6 1674 aa21.24■□□□□ 0.99
GABRE-202ENST00000417300 TRHP20396 242 aaPredicted RBP21.23■□□□□ 0.99
GABRE-202ENST00000417300 RIMBP3CA6NJZ7 1639 aa21.16■□□□□ 0.98
GABRE-202ENST00000417300 RIMBP3BA6NNM3 1639 aa21.16■□□□□ 0.98
GABRE-202ENST00000417300 RIMBP3Q9UFD9 1639 aa21.16■□□□□ 0.98
GABRE-202ENST00000417300 RSF1Q96T23 1441 aaPredicted RBP21.12■□□□□ 0.97
GABRE-202ENST00000417300 MRC2Q9UBG0 1479 aa21.1■□□□□ 0.97
GABRE-202ENST00000417300 MROH2BQ7Z745 1585 aa21.1■□□□□ 0.97
GABRE-202ENST00000417300 SUPT5HO00267 1087 aaKnown RBP21.09■□□□□ 0.97
GABRE-202ENST00000417300 BAZ1BQ9UIG0 1483 aaKnown RBP21.08■□□□□ 0.97
GABRE-202ENST00000417300 SMARCA4P51532 1647 aa21.08■□□□□ 0.97
GABRE-202ENST00000417300 WDR62O43379 1518 aa21.04■□□□□ 0.96
GABRE-202ENST00000417300 CYB5RLQ6IPT4 315 aa21.03■□□□□ 0.96
GABRE-202ENST00000417300 ARHGEF11O15085 1522 aa20.99■□□□□ 0.95
GABRE-202ENST00000417300 WIZO95785 1651 aa20.91■□□□□ 0.94
GABRE-202ENST00000417300 CADPSQ9ULU8 1353 aa20.9■□□□□ 0.94
GABRE-202ENST00000417300 PEG3Q9GZU2 1588 aa20.89■□□□□ 0.93
GABRE-202ENST00000417300 CEP164Q9UPV0 1460 aa20.78■□□□□ 0.92
GABRE-202ENST00000417300 ILDR1Q86SU0 546 aaPredicted RBP20.78■□□□□ 0.92
GABRE-202ENST00000417300 TOP2AP11388 1531 aaKnown RBP20.75■□□□□ 0.91
GABRE-202ENST00000417300 ARAP1Q96P48 1450 aa20.69■□□□□ 0.9
GABRE-202ENST00000417300 FANCD2Q9BXW9 1451 aa20.64■□□□□ 0.89
GABRE-202ENST00000417300 URB2Q14146 1524 aaKnown RBP20.53■□□□□ 0.88
GABRE-202ENST00000417300 ZNF608Q9ULD9 1512 aaPredicted RBP20.49■□□□□ 0.87
GABRE-202ENST00000417300 CCDC88BA6NC98 1476 aa20.47■□□□□ 0.87
GABRE-202ENST00000417300 IFT140Q96RY7 1462 aa20.42■□□□□ 0.86
GABRE-202ENST00000417300 FBLN2P98095 1184 aa20.4■□□□□ 0.86
GABRE-202ENST00000417300 CFTRP13569 1480 aa20.37■□□□□ 0.85
GABRE-202ENST00000417300 CHD1O14646 1710 aa20.33■□□□□ 0.85
GABRE-202ENST00000417300 EIF4G3O43432 1585 aaKnown RBP20.26■□□□□ 0.83
GABRE-202ENST00000417300 AQRO60306 1485 aaKnown RBP eCLIP20.18■□□□□ 0.826e-13■■■□□ 17.1
GABRE-202ENST00000417300 CHIC1Q5VXU3 224 aa20.17■□□□□ 0.82
GABRE-202ENST00000417300 KDM4FA0A1W2PPD8 638 aa20.1■□□□□ 0.81
GABRE-202ENST00000417300 TOPBP1Q92547 1522 aa20.1■□□□□ 0.81
GABRE-202ENST00000417300 CLASP1Q7Z460 1538 aa20.08■□□□□ 0.81
GABRE-202ENST00000417300 PRDM2Q13029 1718 aa20.08■□□□□ 0.81
GABRE-202ENST00000417300 GAPVD1Q14C86 1478 aa20.05■□□□□ 0.8
GABRE-202ENST00000417300 CHMP7Q8WUX9 453 aaPredicted RBP20.03■□□□□ 0.8
GABRE-202ENST00000417300 SYNJ1O43426 1573 aa20.01■□□□□ 0.79
GABRE-202ENST00000417300 ABCC8Q09428 1581 aa20■□□□□ 0.79
GABRE-202ENST00000417300 TARBP1Q13395 1621 aaKnown RBP19.97■□□□□ 0.79
GABRE-202ENST00000417300 SNAPC4Q5SXM2 1469 aa19.92■□□□□ 0.78
GABRE-202ENST00000417300 DNMBPQ6XZF7 1577 aa19.9■□□□□ 0.78
GABRE-202ENST00000417300 WRNQ14191 1432 aaPredicted RBP eCLIP19.89■□□□□ 0.77
GABRE-202ENST00000417300 TDRD9Q8NDG6 1382 aaKnown RBP19.89■□□□□ 0.77
GABRE-202ENST00000417300 FBXO41Q8TF61 875 aa19.84■□□□□ 0.77
GABRE-202ENST00000417300 KIF13AQ9H1H9 1805 aa19.83■□□□□ 0.77
GABRE-202ENST00000417300 POLA1P09884 1462 aaPredicted RBP19.81■□□□□ 0.76
GABRE-202ENST00000417300 BIVM-ERCC5R4GMW8 1640 aa19.81■□□□□ 0.76
GABRE-202ENST00000417300 MAGI1Q96QZ7 1491 aaPredicted RBP19.8■□□□□ 0.76
GABRE-202ENST00000417300 TOP2BQ02880 1626 aa19.8■□□□□ 0.76
GABRE-202ENST00000417300 RAD54L2Q9Y4B4 1467 aa19.79■□□□□ 0.76
GABRE-202ENST00000417300 ERCC6L2Q5T890 1561 aa19.79■□□□□ 0.76
GABRE-202ENST00000417300 FAM69CQ0P6D2 419 aa19.77■□□□□ 0.76
GABRE-202ENST00000417300 SOGA1O94964 1423 aa19.76■□□□□ 0.75
GABRE-202ENST00000417300 SYNJ2O15056 1496 aa19.76■□□□□ 0.75
GABRE-202ENST00000417300 CUX1P39880 1505 aa19.75■□□□□ 0.75
GABRE-202ENST00000417300 HECW2Q9P2P5 1572 aa19.7■□□□□ 0.74
GABRE-202ENST00000417300 GRIN2BQ13224 1484 aa19.7■□□□□ 0.74
GABRE-202ENST00000417300 KDM6BO15054 1643 aa19.69■□□□□ 0.74
GABRE-202ENST00000417300 WDR97A6NE52 1622 aa19.68■□□□□ 0.74
GABRE-202ENST00000417300 LMTK3Q96Q04 1460 aa19.67■□□□□ 0.74
GABRE-202ENST00000417300 ABCC10Q5T3U5 1492 aa19.64■□□□□ 0.73
GABRE-202ENST00000417300 ADGRL1O94910 1474 aa19.6■□□□□ 0.73
GABRE-202ENST00000417300 NPM1P06748 294 aaKnown RBP eCLIP19.58■□□□□ 0.72
GABRE-202ENST00000417300 EEA1Q15075 1411 aa19.58■□□□□ 0.72
GABRE-202ENST00000417300 SOCS7O14512 581 aa19.56■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms