RNA–Protein interactions for RNA: ENST00000417239.1

SMIM12-201, Transcript of small integral membrane protein 12, humanhuman

APPRIS P1 TSL 3 BASIC

Gene SMIM12, Length 684 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM12-201ENST00000417239 NISCHQ9Y2I1 1504 aa22.89■■□□□ 1.26
SMIM12-201ENST00000417239 ABCC9O60706 1549 aa21.24■□□□□ 0.99
SMIM12-201ENST00000417239 CCDC180Q9P1Z9 1646 aa20.89■□□□□ 0.94
SMIM12-201ENST00000417239 DNAJC5BQ9UF47 199 aa20.34■□□□□ 0.85
SMIM12-201ENST00000417239 RB1CC1Q8TDY2 1594 aa20.05■□□□□ 0.8
SMIM12-201ENST00000417239 NACADO15069 1562 aa19.78■□□□□ 0.76
SMIM12-201ENST00000417239 UNC13AQ9UPW8 1703 aa19.76■□□□□ 0.75
SMIM12-201ENST00000417239 PABPN1Q86U42 306 aaKnown RBP eCLIP19.6■□□□□ 0.73
SMIM12-201ENST00000417239 BICRAQ9NZM4 1560 aa19.53■□□□□ 0.72
SMIM12-201ENST00000417239 MYO15BQ96JP2 1530 aa19.35■□□□□ 0.69
SMIM12-201ENST00000417239 DCAF8L2P0C7V8 631 aa19.34■□□□□ 0.69
SMIM12-201ENST00000417239 CC2D2AQ9P2K1 1620 aa19.24■□□□□ 0.67
SMIM12-201ENST00000417239 SHROOM4Q9ULL8 1493 aa19.19■□□□□ 0.66
SMIM12-201ENST00000417239 CECR2Q9BXF3 1484 aa19.18■□□□□ 0.66
SMIM12-201ENST00000417239 EIF4G1Q04637 1599 aaKnown RBP19.06■□□□□ 0.64
SMIM12-201ENST00000417239 DNAJC5Q9H3Z4 198 aa19.04■□□□□ 0.64
SMIM12-201ENST00000417239 SCRIBQ14160 1630 aa18.92■□□□□ 0.62
SMIM12-201ENST00000417239 DCAF1Q9Y4B6 1507 aa18.91■□□□□ 0.62
SMIM12-201ENST00000417239 ZCCHC6Q5VYS8 1495 aaKnown RBP18.89■□□□□ 0.61
SMIM12-201ENST00000417239 CUX2O14529 1486 aa18.55■□□□□ 0.56
SMIM12-201ENST00000417239 ERCC6Q03468 1493 aa18.35■□□□□ 0.53
SMIM12-201ENST00000417239 NCAPD3P42695 1498 aa18.22■□□□□ 0.51
SMIM12-201ENST00000417239 THOC2Q8NI27 1593 aaKnown RBP18.14■□□□□ 0.49
SMIM12-201ENST00000417239 NESP48681 1621 aa18.12■□□□□ 0.49
SMIM12-201ENST00000417239 HMGXB3Q12766 1538 aa18.11■□□□□ 0.49
SMIM12-201ENST00000417239 ATAD2BQ9ULI0 1458 aa18.09■□□□□ 0.49
SMIM12-201ENST00000417239 SMARCA2P51531 1590 aa18.04■□□□□ 0.48
SMIM12-201ENST00000417239 SMARCA4P51532 1647 aa18.02■□□□□ 0.48
SMIM12-201ENST00000417239 KIF21AQ7Z4S6 1674 aa17.99■□□□□ 0.47
SMIM12-201ENST00000417239 LAMC3Q9Y6N6 1575 aa17.96■□□□□ 0.46
SMIM12-201ENST00000417239 TRIM41Q8WV44 630 aa17.94■□□□□ 0.46
SMIM12-201ENST00000417239 BAZ1BQ9UIG0 1483 aaKnown RBP17.89■□□□□ 0.45
SMIM12-201ENST00000417239 PEG3Q9GZU2 1588 aa17.86■□□□□ 0.45
SMIM12-201ENST00000417239 BAZ1AQ9NRL2 1556 aaPredicted RBP17.82■□□□□ 0.44
SMIM12-201ENST00000417239 PDS5BQ9NTI5 1447 aa17.77■□□□□ 0.44
SMIM12-201ENST00000417239 WDR62O43379 1518 aa17.72■□□□□ 0.43
SMIM12-201ENST00000417239 MRC2Q9UBG0 1479 aa17.7■□□□□ 0.42
SMIM12-201ENST00000417239 MROH2BQ7Z745 1585 aa17.64■□□□□ 0.41
SMIM12-201ENST00000417239 CADPSQ9ULU8 1353 aa17.6■□□□□ 0.41
SMIM12-201ENST00000417239 CEP164Q9UPV0 1460 aa17.52■□□□□ 0.4
SMIM12-201ENST00000417239 RIMBP3CA6NJZ7 1639 aa17.5■□□□□ 0.39
SMIM12-201ENST00000417239 RIMBP3BA6NNM3 1639 aa17.5■□□□□ 0.39
SMIM12-201ENST00000417239 RIMBP3Q9UFD9 1639 aa17.5■□□□□ 0.39
SMIM12-201ENST00000417239 OSCARQ8IYS5 282 aa17.49■□□□□ 0.39
SMIM12-201ENST00000417239 WIZO95785 1651 aa17.45■□□□□ 0.38
SMIM12-201ENST00000417239 FANCD2Q9BXW9 1451 aa17.44■□□□□ 0.38
SMIM12-201ENST00000417239 URB2Q14146 1524 aaKnown RBP17.37■□□□□ 0.37
SMIM12-201ENST00000417239 ARHGEF11O15085 1522 aa17.35■□□□□ 0.37
SMIM12-201ENST00000417239 CFTRP13569 1480 aa17.34■□□□□ 0.37
SMIM12-201ENST00000417239 PRDM2Q13029 1718 aa17.33■□□□□ 0.36
SMIM12-201ENST00000417239 ZNF608Q9ULD9 1512 aaPredicted RBP17.22■□□□□ 0.35
SMIM12-201ENST00000417239 CHD1O14646 1710 aa17.2■□□□□ 0.34
SMIM12-201ENST00000417239 EIF4G3O43432 1585 aaKnown RBP17.19■□□□□ 0.34
SMIM12-201ENST00000417239 IFT140Q96RY7 1462 aa17.18■□□□□ 0.34
SMIM12-201ENST00000417239 TOP2AP11388 1531 aaKnown RBP17.16■□□□□ 0.34
SMIM12-201ENST00000417239 ARAP1Q96P48 1450 aa17.14■□□□□ 0.33
SMIM12-201ENST00000417239 CYB5RLQ6IPT4 315 aa17.11■□□□□ 0.33
SMIM12-201ENST00000417239 TOPBP1Q92547 1522 aa17.07■□□□□ 0.32
SMIM12-201ENST00000417239 TRHP20396 242 aaPredicted RBP17.07■□□□□ 0.32
SMIM12-201ENST00000417239 RSF1Q96T23 1441 aaPredicted RBP17.04■□□□□ 0.32
SMIM12-201ENST00000417239 TARBP1Q13395 1621 aaKnown RBP17.03■□□□□ 0.32
SMIM12-201ENST00000417239 DNMBPQ6XZF7 1577 aa17■□□□□ 0.31
SMIM12-201ENST00000417239 ABCC8Q09428 1581 aa16.98■□□□□ 0.31
SMIM12-201ENST00000417239 AQRO60306 1485 aaKnown RBP eCLIP16.95■□□□□ 0.3
SMIM12-201ENST00000417239 AEBP2Q6ZN18 517 aaPredicted RBP16.94■□□□□ 0.3
SMIM12-201ENST00000417239 CLASP1Q7Z460 1538 aa16.93■□□□□ 0.3
SMIM12-201ENST00000417239 CCDC88BA6NC98 1476 aa16.92■□□□□ 0.3
SMIM12-201ENST00000417239 POLA1P09884 1462 aaPredicted RBP16.86■□□□□ 0.29
SMIM12-201ENST00000417239 FBLN2P98095 1184 aa16.85■□□□□ 0.29
SMIM12-201ENST00000417239 SYNJ1O43426 1573 aa16.83■□□□□ 0.28
SMIM12-201ENST00000417239 WDR97A6NE52 1622 aa16.82■□□□□ 0.28
SMIM12-201ENST00000417239 SNAPC4Q5SXM2 1469 aa16.8■□□□□ 0.28
SMIM12-201ENST00000417239 RAD54L2Q9Y4B4 1467 aa16.78■□□□□ 0.28
SMIM12-201ENST00000417239 MAGI1Q96QZ7 1491 aaPredicted RBP16.74■□□□□ 0.27
SMIM12-201ENST00000417239 TDRD9Q8NDG6 1382 aaKnown RBP16.74■□□□□ 0.27
SMIM12-201ENST00000417239 PBRM1Q86U86 1689 aa16.72■□□□□ 0.27
SMIM12-201ENST00000417239 SOGA1O94964 1423 aa16.71■□□□□ 0.27
SMIM12-201ENST00000417239 GAPVD1Q14C86 1478 aa16.7■□□□□ 0.26
SMIM12-201ENST00000417239 SYNJ2O15056 1496 aa16.69■□□□□ 0.26
SMIM12-201ENST00000417239 FGD5Q6ZNL6 1462 aa16.68■□□□□ 0.26
SMIM12-201ENST00000417239 GRIN2BQ13224 1484 aa16.67■□□□□ 0.26
SMIM12-201ENST00000417239 CHMP7Q8WUX9 453 aaPredicted RBP16.66■□□□□ 0.26
SMIM12-201ENST00000417239 KIF13AQ9H1H9 1805 aa16.64■□□□□ 0.25
SMIM12-201ENST00000417239 CUX1P39880 1505 aa16.61■□□□□ 0.25
SMIM12-201ENST00000417239 ERCC6L2Q5T890 1561 aa16.61■□□□□ 0.25
SMIM12-201ENST00000417239 ABCA5Q8WWZ7 1642 aa16.57■□□□□ 0.24
SMIM12-201ENST00000417239 SHROOM2Q13796 1616 aa16.52■□□□□ 0.24
SMIM12-201ENST00000417239 CEP170Q5SW79 1584 aa16.52■□□□□ 0.24
SMIM12-201ENST00000417239 GRIN2AQ12879 1464 aa16.48■□□□□ 0.23
SMIM12-201ENST00000417239 ADAMTS12P58397 1594 aa16.47■□□□□ 0.23
SMIM12-201ENST00000417239 ABCA10Q8WWZ4 1543 aa16.46■□□□□ 0.23
SMIM12-201ENST00000417239 NUP160Q12769 1436 aa16.44■□□□□ 0.22
SMIM12-201ENST00000417239 DIP2BQ9P265 1576 aa16.36■□□□□ 0.21
SMIM12-201ENST00000417239 KDM6BO15054 1643 aa16.34■□□□□ 0.21
SMIM12-201ENST00000417239 ABCC10Q5T3U5 1492 aa16.33■□□□□ 0.2
SMIM12-201ENST00000417239 MAPKBP1O60336 1514 aa16.33■□□□□ 0.2
SMIM12-201ENST00000417239 ILDR1Q86SU0 546 aaPredicted RBP16.32■□□□□ 0.2
SMIM12-201ENST00000417239 KDM4FA0A1W2PPD8 638 aa16.3■□□□□ 0.2
SMIM12-201ENST00000417239 FHAD1B1AJZ9 1412 aa16.29■□□□□ 0.2
SMIM12-201ENST00000417239 TSPOAP1O95153 1857 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 173.9 ms