RNA–Protein interactions for RNA: ENST00000416728.3

PAF1-202, Transcript of PAF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 2

Gene PAF1, Length 1,383 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PAF1-202ENST00000416728 NISCHQ9Y2I1 1504 aa36.07■■■■□ 3.36
PAF1-202ENST00000416728 ABCC9O60706 1549 aa32.34■■■□□ 2.77
PAF1-202ENST00000416728 CCDC180Q9P1Z9 1646 aa32.3■■■□□ 2.76
PAF1-202ENST00000416728 RB1CC1Q8TDY2 1594 aa30.78■■■□□ 2.52
PAF1-202ENST00000416728 NACADO15069 1562 aa30.57■■■□□ 2.48
PAF1-202ENST00000416728 DCAF8L2P0C7V8 631 aa30.48■■■□□ 2.47
PAF1-202ENST00000416728 DNAJC5BQ9UF47 199 aa30.28■■■□□ 2.44
PAF1-202ENST00000416728 MYO15BQ96JP2 1530 aa30.17■■■□□ 2.42
PAF1-202ENST00000416728 PABPN1Q86U42 306 aaKnown RBP eCLIP30.13■■■□□ 2.41
PAF1-202ENST00000416728 UNC13AQ9UPW8 1703 aa29.96■■■□□ 2.39
PAF1-202ENST00000416728 ZCCHC6Q5VYS8 1495 aaKnown RBP29.91■■■□□ 2.38
PAF1-202ENST00000416728 BICRAQ9NZM4 1560 aa29.85■■■□□ 2.37
PAF1-202ENST00000416728 DCAF1Q9Y4B6 1507 aa29.79■■■□□ 2.36
PAF1-202ENST00000416728 SHROOM4Q9ULL8 1493 aa29.5■■■□□ 2.31
PAF1-202ENST00000416728 SCRIBQ14160 1630 aa29.47■■■□□ 2.31
PAF1-202ENST00000416728 CC2D2AQ9P2K1 1620 aa29.17■■■□□ 2.26
PAF1-202ENST00000416728 EIF4G1Q04637 1599 aaKnown RBP29.13■■■□□ 2.25
PAF1-202ENST00000416728 CECR2Q9BXF3 1484 aa29.13■■■□□ 2.25
PAF1-202ENST00000416728 NCAPD3P42695 1498 aa28.24■■■□□ 2.11
PAF1-202ENST00000416728 ATAD2BQ9ULI0 1458 aa28.16■■■□□ 2.1
PAF1-202ENST00000416728 SMARCA4P51532 1647 aa28.11■■■□□ 2.09
PAF1-202ENST00000416728 SMARCA2P51531 1590 aa28.08■■■□□ 2.09
PAF1-202ENST00000416728 HMGXB3Q12766 1538 aa28.02■■■□□ 2.08
PAF1-202ENST00000416728 BAZ1AQ9NRL2 1556 aaPredicted RBP28■■■□□ 2.07
PAF1-202ENST00000416728 ERCC6Q03468 1493 aa27.94■■■□□ 2.06
PAF1-202ENST00000416728 BAZ1BQ9UIG0 1483 aaKnown RBP27.9■■■□□ 2.06
PAF1-202ENST00000416728 CUX2O14529 1486 aa27.86■■■□□ 2.05
PAF1-202ENST00000416728 PEG3Q9GZU2 1588 aa27.83■■■□□ 2.05
PAF1-202ENST00000416728 DNAJC5Q9H3Z4 198 aa27.81■■■□□ 2.04
PAF1-202ENST00000416728 MROH2BQ7Z745 1585 aa27.78■■■□□ 2.04
PAF1-202ENST00000416728 NESP48681 1621 aa27.76■■■□□ 2.04
PAF1-202ENST00000416728 LAMC3Q9Y6N6 1575 aa27.58■■■□□ 2.01
PAF1-202ENST00000416728 PDS5BQ9NTI5 1447 aa27.46■■□□□ 1.99
PAF1-202ENST00000416728 THOC2Q8NI27 1593 aaKnown RBP27.45■■□□□ 1.99
PAF1-202ENST00000416728 WIZO95785 1651 aa27.41■■□□□ 1.98
PAF1-202ENST00000416728 CADPSQ9ULU8 1353 aa27.39■■□□□ 1.98
PAF1-202ENST00000416728 KIF21AQ7Z4S6 1674 aa27.35■■□□□ 1.97
PAF1-202ENST00000416728 RSF1Q96T23 1441 aaPredicted RBP27.24■■□□□ 1.95
PAF1-202ENST00000416728 MRC2Q9UBG0 1479 aa27.2■■□□□ 1.95
PAF1-202ENST00000416728 WDR62O43379 1518 aa27.12■■□□□ 1.93
PAF1-202ENST00000416728 TOP2AP11388 1531 aaKnown RBP27.12■■□□□ 1.93
PAF1-202ENST00000416728 CEP164Q9UPV0 1460 aa27.12■■□□□ 1.93
PAF1-202ENST00000416728 CFTRP13569 1480 aa27.08■■□□□ 1.93
PAF1-202ENST00000416728 FANCD2Q9BXW9 1451 aa27.08■■□□□ 1.93
PAF1-202ENST00000416728 URB2Q14146 1524 aaKnown RBP26.83■■□□□ 1.89
PAF1-202ENST00000416728 CCDC88BA6NC98 1476 aa26.81■■□□□ 1.88
PAF1-202ENST00000416728 PRDM2Q13029 1718 aa26.7■■□□□ 1.87
PAF1-202ENST00000416728 TRIM41Q8WV44 630 aa26.63■■□□□ 1.85
PAF1-202ENST00000416728 OSCARQ8IYS5 282 aa26.61■■□□□ 1.85
PAF1-202ENST00000416728 IFT140Q96RY7 1462 aa26.56■■□□□ 1.84
PAF1-202ENST00000416728 TOPBP1Q92547 1522 aa26.56■■□□□ 1.84
PAF1-202ENST00000416728 ABCC8Q09428 1581 aa26.52■■□□□ 1.84
PAF1-202ENST00000416728 ZNF608Q9ULD9 1512 aaPredicted RBP26.51■■□□□ 1.83
PAF1-202ENST00000416728 DNMBPQ6XZF7 1577 aa26.45■■□□□ 1.83
PAF1-202ENST00000416728 EIF4G3O43432 1585 aaKnown RBP26.34■■□□□ 1.81
PAF1-202ENST00000416728 POLA1P09884 1462 aaPredicted RBP26.3■■□□□ 1.8
PAF1-202ENST00000416728 TARBP1Q13395 1621 aaKnown RBP26.28■■□□□ 1.8
PAF1-202ENST00000416728 AQRO60306 1485 aaKnown RBP eCLIP26.27■■□□□ 1.82e-8■■■■■ 39.4
PAF1-202ENST00000416728 RIMBP3CA6NJZ7 1639 aa26.2■■□□□ 1.78
PAF1-202ENST00000416728 RIMBP3BA6NNM3 1639 aa26.2■■□□□ 1.78
PAF1-202ENST00000416728 RIMBP3Q9UFD9 1639 aa26.2■■□□□ 1.78
PAF1-202ENST00000416728 RAD54L2Q9Y4B4 1467 aa26.19■■□□□ 1.78
PAF1-202ENST00000416728 SOGA1O94964 1423 aa26.19■■□□□ 1.78
PAF1-202ENST00000416728 ARHGEF11O15085 1522 aa26.16■■□□□ 1.78
PAF1-202ENST00000416728 FBLN2P98095 1184 aa26.14■■□□□ 1.78
PAF1-202ENST00000416728 TDRD9Q8NDG6 1382 aaKnown RBP26.14■■□□□ 1.77
PAF1-202ENST00000416728 FGD5Q6ZNL6 1462 aa26.14■■□□□ 1.77
PAF1-202ENST00000416728 CUX1P39880 1505 aa26.1■■□□□ 1.77
PAF1-202ENST00000416728 SUPT5HO00267 1087 aaKnown RBP26.09■■□□□ 1.77
PAF1-202ENST00000416728 CHD1O14646 1710 aa26.09■■□□□ 1.77
PAF1-202ENST00000416728 WDR97A6NE52 1622 aa26.04■■□□□ 1.76
PAF1-202ENST00000416728 SNAPC4Q5SXM2 1469 aa26.02■■□□□ 1.76
PAF1-202ENST00000416728 CYB5RLQ6IPT4 315 aa25.99■■□□□ 1.75
PAF1-202ENST00000416728 GRIN2BQ13224 1484 aa25.96■■□□□ 1.75
PAF1-202ENST00000416728 MAGI1Q96QZ7 1491 aaPredicted RBP25.95■■□□□ 1.75
PAF1-202ENST00000416728 CHMP7Q8WUX9 453 aaPredicted RBP25.95■■□□□ 1.74
PAF1-202ENST00000416728 ARAP1Q96P48 1450 aa25.91■■□□□ 1.74
PAF1-202ENST00000416728 SYNJ2O15056 1496 aa25.87■■□□□ 1.73
PAF1-202ENST00000416728 GAPVD1Q14C86 1478 aa25.87■■□□□ 1.73
PAF1-202ENST00000416728 SYNJ1O43426 1573 aa25.85■■□□□ 1.73
PAF1-202ENST00000416728 CLASP1Q7Z460 1538 aa25.84■■□□□ 1.73
PAF1-202ENST00000416728 ABCA10Q8WWZ4 1543 aa25.84■■□□□ 1.73
PAF1-202ENST00000416728 WRNQ14191 1432 aaPredicted RBP eCLIP25.78■■□□□ 1.72
PAF1-202ENST00000416728 PBRM1Q86U86 1689 aa25.78■■□□□ 1.72
PAF1-202ENST00000416728 ABCA5Q8WWZ7 1642 aa25.77■■□□□ 1.72
PAF1-202ENST00000416728 TRHP20396 242 aaPredicted RBP25.71■■□□□ 1.71
PAF1-202ENST00000416728 TOP2BQ02880 1626 aa25.68■■□□□ 1.7
PAF1-202ENST00000416728 BIVM-ERCC5R4GMW8 1640 aa25.66■■□□□ 1.7
PAF1-202ENST00000416728 GRIN2AQ12879 1464 aa25.62■■□□□ 1.69
PAF1-202ENST00000416728 ADAMTS12P58397 1594 aa25.58■■□□□ 1.69
PAF1-202ENST00000416728 FHAD1B1AJZ9 1412 aa25.55■■□□□ 1.68
PAF1-202ENST00000416728 NUP160Q12769 1436 aa25.53■■□□□ 1.68
PAF1-202ENST00000416728 ERICH3Q5RHP9 1530 aa25.51■■□□□ 1.67
PAF1-202ENST00000416728 CEP170Q5SW79 1584 aa25.5■■□□□ 1.67
PAF1-202ENST00000416728 ERCC6L2Q5T890 1561 aa25.43■■□□□ 1.66
PAF1-202ENST00000416728 SHROOM2Q13796 1616 aa25.37■■□□□ 1.65
PAF1-202ENST00000416728 PRG4Q92954 1404 aaPredicted RBP25.3■■□□□ 1.64
PAF1-202ENST00000416728 JPH4Q96JJ6 628 aa25.29■■□□□ 1.64
PAF1-202ENST00000416728 KIF27Q86VH2 1401 aa25.24■■□□□ 1.63
PAF1-202ENST00000416728 RUSC2Q8N2Y8 1516 aa25.23■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 345.7 ms