RNA–Protein interactions for RNA: ENST00000416571.5

MDC1-202, Transcript of mediator of DNA damage checkpoint 1, humanhuman

TSL 3

Gene MDC1, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDC1-202ENST00000416571 NISCHQ9Y2I1 1504 aa25.31■■□□□ 1.64
MDC1-202ENST00000416571 ABCC9O60706 1549 aa22.99■■□□□ 1.27
MDC1-202ENST00000416571 CCDC180Q9P1Z9 1646 aa22.84■■□□□ 1.25
MDC1-202ENST00000416571 DNAJC5BQ9UF47 199 aa22.2■■□□□ 1.14
MDC1-202ENST00000416571 RB1CC1Q8TDY2 1594 aa21.83■■□□□ 1.09
MDC1-202ENST00000416571 NACADO15069 1562 aa21.62■■□□□ 1.05
MDC1-202ENST00000416571 DCAF8L2P0C7V8 631 aa21.5■■□□□ 1.03
MDC1-202ENST00000416571 PABPN1Q86U42 306 aaKnown RBP eCLIP21.35■■□□□ 1.01
MDC1-202ENST00000416571 UNC13AQ9UPW8 1703 aa21.32■■□□□ 1
MDC1-202ENST00000416571 DNAJC5Q9H3Z4 198 aa21.32■■□□□ 1
MDC1-202ENST00000416571 MYO15BQ96JP2 1530 aa21.23■□□□□ 0.99
MDC1-202ENST00000416571 BICRAQ9NZM4 1560 aa21.14■□□□□ 0.97
MDC1-202ENST00000416571 ZCCHC6Q5VYS8 1495 aaKnown RBP20.94■□□□□ 0.94
MDC1-202ENST00000416571 DCAF1Q9Y4B6 1507 aa20.89■□□□□ 0.94
MDC1-202ENST00000416571 SHROOM4Q9ULL8 1493 aa20.88■□□□□ 0.93
MDC1-202ENST00000416571 SCRIBQ14160 1630 aa20.8■□□□□ 0.92
MDC1-202ENST00000416571 CC2D2AQ9P2K1 1620 aa20.77■□□□□ 0.92
MDC1-202ENST00000416571 CECR2Q9BXF3 1484 aa20.74■□□□□ 0.91
MDC1-202ENST00000416571 EIF4G1Q04637 1599 aaKnown RBP20.68■□□□□ 0.9
MDC1-202ENST00000416571 NCAPD3P42695 1498 aa19.92■□□□□ 0.78
MDC1-202ENST00000416571 ERCC6Q03468 1493 aa19.92■□□□□ 0.78
MDC1-202ENST00000416571 CUX2O14529 1486 aa19.91■□□□□ 0.78
MDC1-202ENST00000416571 TRIM41Q8WV44 630 aa19.86■□□□□ 0.77
MDC1-202ENST00000416571 ATAD2BQ9ULI0 1458 aa19.84■□□□□ 0.77
MDC1-202ENST00000416571 SMARCA2P51531 1590 aa19.83■□□□□ 0.76
MDC1-202ENST00000416571 SMARCA4P51532 1647 aa19.81■□□□□ 0.76
MDC1-202ENST00000416571 HMGXB3Q12766 1538 aa19.8■□□□□ 0.76
MDC1-202ENST00000416571 BAZ1AQ9NRL2 1556 aaPredicted RBP19.7■□□□□ 0.74
MDC1-202ENST00000416571 BAZ1BQ9UIG0 1483 aaKnown RBP19.68■□□□□ 0.74
MDC1-202ENST00000416571 NESP48681 1621 aa19.68■□□□□ 0.74
MDC1-202ENST00000416571 PEG3Q9GZU2 1588 aa19.59■□□□□ 0.73
MDC1-202ENST00000416571 LAMC3Q9Y6N6 1575 aa19.56■□□□□ 0.72
MDC1-202ENST00000416571 THOC2Q8NI27 1593 aaKnown RBP19.54■□□□□ 0.72
MDC1-202ENST00000416571 MROH2BQ7Z745 1585 aa19.49■□□□□ 0.71
MDC1-202ENST00000416571 KIF21AQ7Z4S6 1674 aa19.46■□□□□ 0.71
MDC1-202ENST00000416571 PDS5BQ9NTI5 1447 aa19.44■□□□□ 0.7
MDC1-202ENST00000416571 CADPSQ9ULU8 1353 aa19.32■□□□□ 0.68
MDC1-202ENST00000416571 WIZO95785 1651 aa19.28■□□□□ 0.68
MDC1-202ENST00000416571 MRC2Q9UBG0 1479 aa19.28■□□□□ 0.68
MDC1-202ENST00000416571 WDR62O43379 1518 aa19.23■□□□□ 0.67
MDC1-202ENST00000416571 CEP164Q9UPV0 1460 aa19.18■□□□□ 0.66
MDC1-202ENST00000416571 FANCD2Q9BXW9 1451 aa19.12■□□□□ 0.65
MDC1-202ENST00000416571 CFTRP13569 1480 aa19.06■□□□□ 0.64
MDC1-202ENST00000416571 TOP2AP11388 1531 aaKnown RBP19.02■□□□□ 0.64
MDC1-202ENST00000416571 AEBP2Q6ZN18 517 aaPredicted RBP19.02■□□□□ 0.64
MDC1-202ENST00000416571 RSF1Q96T23 1441 aaPredicted RBP19■□□□□ 0.63
MDC1-202ENST00000416571 OSCARQ8IYS5 282 aa18.96■□□□□ 0.63
MDC1-202ENST00000416571 URB2Q14146 1524 aaKnown RBP18.95■□□□□ 0.62
MDC1-202ENST00000416571 PRDM2Q13029 1718 aa18.93■□□□□ 0.62
MDC1-202ENST00000416571 CCDC88BA6NC98 1476 aa18.78■□□□□ 0.6
MDC1-202ENST00000416571 IFT140Q96RY7 1462 aa18.78■□□□□ 0.6
MDC1-202ENST00000416571 ZNF608Q9ULD9 1512 aaPredicted RBP18.74■□□□□ 0.59
MDC1-202ENST00000416571 RIMBP3CA6NJZ7 1639 aa18.74■□□□□ 0.59
MDC1-202ENST00000416571 RIMBP3BA6NNM3 1639 aa18.74■□□□□ 0.59
MDC1-202ENST00000416571 RIMBP3Q9UFD9 1639 aa18.74■□□□□ 0.59
MDC1-202ENST00000416571 TOPBP1Q92547 1522 aa18.73■□□□□ 0.59
MDC1-202ENST00000416571 ABCC8Q09428 1581 aa18.71■□□□□ 0.59
MDC1-202ENST00000416571 EIF4G3O43432 1585 aaKnown RBP18.68■□□□□ 0.58
MDC1-202ENST00000416571 DNMBPQ6XZF7 1577 aa18.67■□□□□ 0.58
MDC1-202ENST00000416571 ARHGEF11O15085 1522 aa18.65■□□□□ 0.58
MDC1-202ENST00000416571 CHD1O14646 1710 aa18.59■□□□□ 0.57
MDC1-202ENST00000416571 TRHP20396 242 aaPredicted RBP18.58■□□□□ 0.56
MDC1-202ENST00000416571 TARBP1Q13395 1621 aaKnown RBP18.58■□□□□ 0.56
MDC1-202ENST00000416571 AQRO60306 1485 aaKnown RBP eCLIP18.56■□□□□ 0.566e-7■■□□□ 13
MDC1-202ENST00000416571 FBLN2P98095 1184 aa18.53■□□□□ 0.56
MDC1-202ENST00000416571 CYB5RLQ6IPT4 315 aa18.53■□□□□ 0.56
MDC1-202ENST00000416571 POLA1P09884 1462 aaPredicted RBP18.52■□□□□ 0.56
MDC1-202ENST00000416571 ILDR1Q86SU0 546 aaPredicted RBP18.5■□□□□ 0.55
MDC1-202ENST00000416571 RAD54L2Q9Y4B4 1467 aa18.46■□□□□ 0.54
MDC1-202ENST00000416571 SOGA1O94964 1423 aa18.45■□□□□ 0.54
MDC1-202ENST00000416571 ARAP1Q96P48 1450 aa18.44■□□□□ 0.54
MDC1-202ENST00000416571 TDRD9Q8NDG6 1382 aaKnown RBP18.42■□□□□ 0.54
MDC1-202ENST00000416571 WDR97A6NE52 1622 aa18.41■□□□□ 0.54
MDC1-202ENST00000416571 FGD5Q6ZNL6 1462 aa18.39■□□□□ 0.54
MDC1-202ENST00000416571 SNAPC4Q5SXM2 1469 aa18.39■□□□□ 0.53
MDC1-202ENST00000416571 SYNJ1O43426 1573 aa18.35■□□□□ 0.53
MDC1-202ENST00000416571 CHMP7Q8WUX9 453 aaPredicted RBP18.35■□□□□ 0.53
MDC1-202ENST00000416571 MAGI1Q96QZ7 1491 aaPredicted RBP18.34■□□□□ 0.53
MDC1-202ENST00000416571 CUX1P39880 1505 aa18.33■□□□□ 0.52
MDC1-202ENST00000416571 CLASP1Q7Z460 1538 aa18.33■□□□□ 0.52
MDC1-202ENST00000416571 GRIN2BQ13224 1484 aa18.32■□□□□ 0.52
MDC1-202ENST00000416571 SYNJ2O15056 1496 aa18.28■□□□□ 0.52
MDC1-202ENST00000416571 PBRM1Q86U86 1689 aa18.27■□□□□ 0.52
MDC1-202ENST00000416571 GAPVD1Q14C86 1478 aa18.23■□□□□ 0.51
MDC1-202ENST00000416571 ABCA5Q8WWZ7 1642 aa18.16■□□□□ 0.5
MDC1-202ENST00000416571 ABCA10Q8WWZ4 1543 aa18.16■□□□□ 0.5
MDC1-202ENST00000416571 SUPT5HO00267 1087 aaKnown RBP18.09■□□□□ 0.49
MDC1-202ENST00000416571 GRIN2AQ12879 1464 aa18.07■□□□□ 0.48
MDC1-202ENST00000416571 WRNQ14191 1432 aaPredicted RBP eCLIP18.07■□□□□ 0.48
MDC1-202ENST00000416571 ADAMTS12P58397 1594 aa18.05■□□□□ 0.48
MDC1-202ENST00000416571 BIVM-ERCC5R4GMW8 1640 aa18.02■□□□□ 0.48
MDC1-202ENST00000416571 CEP170Q5SW79 1584 aa18.01■□□□□ 0.47
MDC1-202ENST00000416571 ERCC6L2Q5T890 1561 aa18.01■□□□□ 0.47
MDC1-202ENST00000416571 TOP2BQ02880 1626 aa18.01■□□□□ 0.47
MDC1-202ENST00000416571 NUP160Q12769 1436 aa17.99■□□□□ 0.47
MDC1-202ENST00000416571 FHAD1B1AJZ9 1412 aa17.98■□□□□ 0.47
MDC1-202ENST00000416571 SHROOM2Q13796 1616 aa17.96■□□□□ 0.47
MDC1-202ENST00000416571 ERICH3Q5RHP9 1530 aa17.95■□□□□ 0.46
MDC1-202ENST00000416571 PRG4Q92954 1404 aaPredicted RBP17.87■□□□□ 0.45
MDC1-202ENST00000416571 KIF13AQ9H1H9 1805 aa17.84■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms