RNA–Protein interactions for RNA: ENST00000416204.1

LINC01238-201, Transcript of long intergenic non-protein coding RNA 1238, humanhuman

TSL 2 BASIC

Gene LINC01238, Length 590 nt, Biotype lincRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01238-201ENST00000416204 NISCHQ9Y2I1 1504 aa23.87■■□□□ 1.41
LINC01238-201ENST00000416204 ABCC9O60706 1549 aa22.04■■□□□ 1.12
LINC01238-201ENST00000416204 CCDC180Q9P1Z9 1646 aa21.47■■□□□ 1.03
LINC01238-201ENST00000416204 DNAJC5BQ9UF47 199 aa21.02■□□□□ 0.96
LINC01238-201ENST00000416204 RB1CC1Q8TDY2 1594 aa20.67■□□□□ 0.9
LINC01238-201ENST00000416204 PABPN1Q86U42 306 aaKnown RBP eCLIP20.53■□□□□ 0.88
LINC01238-201ENST00000416204 DCAF8L2P0C7V8 631 aa20.52■□□□□ 0.88
LINC01238-201ENST00000416204 NACADO15069 1562 aa20.41■□□□□ 0.86
LINC01238-201ENST00000416204 UNC13AQ9UPW8 1703 aa20.22■□□□□ 0.83
LINC01238-201ENST00000416204 BICRAQ9NZM4 1560 aa20.13■□□□□ 0.81
LINC01238-201ENST00000416204 MYO15BQ96JP2 1530 aa19.93■□□□□ 0.78
LINC01238-201ENST00000416204 CECR2Q9BXF3 1484 aa19.83■□□□□ 0.76
LINC01238-201ENST00000416204 CC2D2AQ9P2K1 1620 aa19.8■□□□□ 0.76
LINC01238-201ENST00000416204 SCRIBQ14160 1630 aa19.74■□□□□ 0.75
LINC01238-201ENST00000416204 ZCCHC6Q5VYS8 1495 aaKnown RBP19.7■□□□□ 0.74
LINC01238-201ENST00000416204 EIF4G1Q04637 1599 aaKnown RBP19.66■□□□□ 0.74
LINC01238-201ENST00000416204 SHROOM4Q9ULL8 1493 aa19.66■□□□□ 0.74
LINC01238-201ENST00000416204 DCAF1Q9Y4B6 1507 aa19.58■□□□□ 0.73
LINC01238-201ENST00000416204 DNAJC5Q9H3Z4 198 aa19.45■□□□□ 0.7
LINC01238-201ENST00000416204 ERCC6Q03468 1493 aa19.02■□□□□ 0.63
LINC01238-201ENST00000416204 CUX2O14529 1486 aa18.98■□□□□ 0.63
LINC01238-201ENST00000416204 NCAPD3P42695 1498 aa18.87■□□□□ 0.61
LINC01238-201ENST00000416204 NESP48681 1621 aa18.84■□□□□ 0.61
LINC01238-201ENST00000416204 ATAD2BQ9ULI0 1458 aa18.82■□□□□ 0.6
LINC01238-201ENST00000416204 SMARCA4P51532 1647 aa18.7■□□□□ 0.58
LINC01238-201ENST00000416204 SMARCA2P51531 1590 aa18.69■□□□□ 0.58
LINC01238-201ENST00000416204 HMGXB3Q12766 1538 aa18.68■□□□□ 0.58
LINC01238-201ENST00000416204 BAZ1BQ9UIG0 1483 aaKnown RBP18.64■□□□□ 0.57
LINC01238-201ENST00000416204 THOC2Q8NI27 1593 aaKnown RBP18.61■□□□□ 0.57
LINC01238-201ENST00000416204 TRIM41Q8WV44 630 aa18.61■□□□□ 0.57
LINC01238-201ENST00000416204 BAZ1AQ9NRL2 1556 aaPredicted RBP18.52■□□□□ 0.56
LINC01238-201ENST00000416204 KIF21AQ7Z4S6 1674 aa18.5■□□□□ 0.55
LINC01238-201ENST00000416204 LAMC3Q9Y6N6 1575 aa18.49■□□□□ 0.55
LINC01238-201ENST00000416204 MROH2BQ7Z745 1585 aa18.46■□□□□ 0.55
LINC01238-201ENST00000416204 PEG3Q9GZU2 1588 aa18.43■□□□□ 0.54
LINC01238-201ENST00000416204 PDS5BQ9NTI5 1447 aa18.43■□□□□ 0.54
LINC01238-201ENST00000416204 CADPSQ9ULU8 1353 aa18.33■□□□□ 0.53
LINC01238-201ENST00000416204 MRC2Q9UBG0 1479 aa18.33■□□□□ 0.52
LINC01238-201ENST00000416204 WDR62O43379 1518 aa18.26■□□□□ 0.51
LINC01238-201ENST00000416204 WIZO95785 1651 aa18.22■□□□□ 0.51
LINC01238-201ENST00000416204 CEP164Q9UPV0 1460 aa18.18■□□□□ 0.5
LINC01238-201ENST00000416204 FANCD2Q9BXW9 1451 aa18.15■□□□□ 0.5
LINC01238-201ENST00000416204 OSCARQ8IYS5 282 aa18.14■□□□□ 0.49
LINC01238-201ENST00000416204 URB2Q14146 1524 aaKnown RBP18.04■□□□□ 0.48
LINC01238-201ENST00000416204 CFTRP13569 1480 aa18.02■□□□□ 0.48
LINC01238-201ENST00000416204 RIMBP3CA6NJZ7 1639 aa17.94■□□□□ 0.46
LINC01238-201ENST00000416204 RIMBP3BA6NNM3 1639 aa17.94■□□□□ 0.46
LINC01238-201ENST00000416204 RIMBP3Q9UFD9 1639 aa17.94■□□□□ 0.46
LINC01238-201ENST00000416204 RSF1Q96T23 1441 aaPredicted RBP17.93■□□□□ 0.46
LINC01238-201ENST00000416204 ZNF608Q9ULD9 1512 aaPredicted RBP17.92■□□□□ 0.46
LINC01238-201ENST00000416204 TOP2AP11388 1531 aaKnown RBP17.9■□□□□ 0.46
LINC01238-201ENST00000416204 ARHGEF11O15085 1522 aa17.85■□□□□ 0.45
LINC01238-201ENST00000416204 CYB5RLQ6IPT4 315 aa17.82■□□□□ 0.44
LINC01238-201ENST00000416204 IFT140Q96RY7 1462 aa17.81■□□□□ 0.44
LINC01238-201ENST00000416204 TRHP20396 242 aaPredicted RBP17.76■□□□□ 0.43
LINC01238-201ENST00000416204 TOPBP1Q92547 1522 aa17.76■□□□□ 0.43
LINC01238-201ENST00000416204 CCDC88BA6NC98 1476 aa17.75■□□□□ 0.43
LINC01238-201ENST00000416204 EIF4G3O43432 1585 aaKnown RBP17.74■□□□□ 0.43
LINC01238-201ENST00000416204 PRDM2Q13029 1718 aa17.73■□□□□ 0.43
LINC01238-201ENST00000416204 FBLN2P98095 1184 aa17.73■□□□□ 0.43
LINC01238-201ENST00000416204 AQRO60306 1485 aaKnown RBP eCLIP17.71■□□□□ 0.43
LINC01238-201ENST00000416204 ARAP1Q96P48 1450 aa17.68■□□□□ 0.42
LINC01238-201ENST00000416204 CHD1O14646 1710 aa17.67■□□□□ 0.42
LINC01238-201ENST00000416204 DNMBPQ6XZF7 1577 aa17.63■□□□□ 0.41
LINC01238-201ENST00000416204 TARBP1Q13395 1621 aaKnown RBP17.6■□□□□ 0.41
LINC01238-201ENST00000416204 ABCC8Q09428 1581 aa17.58■□□□□ 0.41
LINC01238-201ENST00000416204 RAD54L2Q9Y4B4 1467 aa17.58■□□□□ 0.41
LINC01238-201ENST00000416204 POLA1P09884 1462 aaPredicted RBP17.56■□□□□ 0.4
LINC01238-201ENST00000416204 TDRD9Q8NDG6 1382 aaKnown RBP17.56■□□□□ 0.4
LINC01238-201ENST00000416204 SNAPC4Q5SXM2 1469 aa17.5■□□□□ 0.39
LINC01238-201ENST00000416204 SOGA1O94964 1423 aa17.48■□□□□ 0.39
LINC01238-201ENST00000416204 AEBP2Q6ZN18 517 aaPredicted RBP17.46■□□□□ 0.39
LINC01238-201ENST00000416204 CHMP7Q8WUX9 453 aaPredicted RBP17.46■□□□□ 0.39
LINC01238-201ENST00000416204 CLASP1Q7Z460 1538 aa17.43■□□□□ 0.38
LINC01238-201ENST00000416204 FGD5Q6ZNL6 1462 aa17.42■□□□□ 0.38
LINC01238-201ENST00000416204 SYNJ1O43426 1573 aa17.37■□□□□ 0.37
LINC01238-201ENST00000416204 CUX1P39880 1505 aa17.35■□□□□ 0.37
LINC01238-201ENST00000416204 GRIN2BQ13224 1484 aa17.34■□□□□ 0.37
LINC01238-201ENST00000416204 MAGI1Q96QZ7 1491 aaPredicted RBP17.34■□□□□ 0.37
LINC01238-201ENST00000416204 SYNJ2O15056 1496 aa17.31■□□□□ 0.36
LINC01238-201ENST00000416204 GAPVD1Q14C86 1478 aa17.31■□□□□ 0.36
LINC01238-201ENST00000416204 WDR97A6NE52 1622 aa17.27■□□□□ 0.36
LINC01238-201ENST00000416204 ERCC6L2Q5T890 1561 aa17.24■□□□□ 0.35
LINC01238-201ENST00000416204 PBRM1Q86U86 1689 aa17.24■□□□□ 0.35
LINC01238-201ENST00000416204 ABCA5Q8WWZ7 1642 aa17.15■□□□□ 0.34
LINC01238-201ENST00000416204 ABCA10Q8WWZ4 1543 aa17.14■□□□□ 0.33
LINC01238-201ENST00000416204 GRIN2AQ12879 1464 aa17.12■□□□□ 0.33
LINC01238-201ENST00000416204 CEP170Q5SW79 1584 aa17.11■□□□□ 0.33
LINC01238-201ENST00000416204 ADAMTS12P58397 1594 aa17.07■□□□□ 0.32
LINC01238-201ENST00000416204 NUP160Q12769 1436 aa17.05■□□□□ 0.32
LINC01238-201ENST00000416204 WRNQ14191 1432 aaPredicted RBP eCLIP17.04■□□□□ 0.32
LINC01238-201ENST00000416204 SUPT5HO00267 1087 aaKnown RBP17.03■□□□□ 0.32
LINC01238-201ENST00000416204 FHAD1B1AJZ9 1412 aa17■□□□□ 0.31
LINC01238-201ENST00000416204 SHROOM2Q13796 1616 aa16.99■□□□□ 0.31
LINC01238-201ENST00000416204 PRG4Q92954 1404 aaPredicted RBP16.99■□□□□ 0.31
LINC01238-201ENST00000416204 KIF13AQ9H1H9 1805 aa16.98■□□□□ 0.31
LINC01238-201ENST00000416204 FAM69CQ0P6D2 419 aa16.96■□□□□ 0.31
LINC01238-201ENST00000416204 JPH4Q96JJ6 628 aa16.94■□□□□ 0.3
LINC01238-201ENST00000416204 TOP2BQ02880 1626 aa16.92■□□□□ 0.3
LINC01238-201ENST00000416204 BIVM-ERCC5R4GMW8 1640 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms