RNA–Protein interactions for RNA: ENST00000415886.2

CTHRC1-202, Transcript of collagen triple helix repeat containing 1, humanhuman

TSL 2 BASIC

Gene CTHRC1, Length 571 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTHRC1-202ENST00000415886 NISCHQ9Y2I1 1504 aa33.54■■■□□ 2.96
CTHRC1-202ENST00000415886 ABCC9O60706 1549 aa30.53■■■□□ 2.48
CTHRC1-202ENST00000415886 CCDC180Q9P1Z9 1646 aa30.22■■■□□ 2.43
CTHRC1-202ENST00000415886 RB1CC1Q8TDY2 1594 aa28.9■■■□□ 2.22
CTHRC1-202ENST00000415886 DNAJC5BQ9UF47 199 aa28.9■■■□□ 2.22
CTHRC1-202ENST00000415886 NACADO15069 1562 aa28.62■■■□□ 2.17
CTHRC1-202ENST00000415886 DCAF8L2P0C7V8 631 aa28.43■■■□□ 2.14
CTHRC1-202ENST00000415886 PABPN1Q86U42 306 aaKnown RBP eCLIP28.37■■■□□ 2.13
CTHRC1-202ENST00000415886 UNC13AQ9UPW8 1703 aa28.28■■■□□ 2.12
CTHRC1-202ENST00000415886 MYO15BQ96JP2 1530 aa28.12■■■□□ 2.09
CTHRC1-202ENST00000415886 BICRAQ9NZM4 1560 aa28.11■■■□□ 2.09
CTHRC1-202ENST00000415886 ZCCHC6Q5VYS8 1495 aaKnown RBP27.76■■■□□ 2.03
CTHRC1-202ENST00000415886 DCAF1Q9Y4B6 1507 aa27.66■■■□□ 2.02
CTHRC1-202ENST00000415886 SHROOM4Q9ULL8 1493 aa27.64■■■□□ 2.02
CTHRC1-202ENST00000415886 SCRIBQ14160 1630 aa27.56■■■□□ 2
CTHRC1-202ENST00000415886 CC2D2AQ9P2K1 1620 aa27.56■■■□□ 2
CTHRC1-202ENST00000415886 CECR2Q9BXF3 1484 aa27.52■■■□□ 2
CTHRC1-202ENST00000415886 EIF4G1Q04637 1599 aaKnown RBP27.43■■□□□ 1.98
CTHRC1-202ENST00000415886 DNAJC5Q9H3Z4 198 aa26.7■■□□□ 1.86
CTHRC1-202ENST00000415886 NCAPD3P42695 1498 aa26.42■■□□□ 1.82
CTHRC1-202ENST00000415886 CUX2O14529 1486 aa26.41■■□□□ 1.82
CTHRC1-202ENST00000415886 ERCC6Q03468 1493 aa26.37■■□□□ 1.81
CTHRC1-202ENST00000415886 ATAD2BQ9ULI0 1458 aa26.33■■□□□ 1.81
CTHRC1-202ENST00000415886 SMARCA4P51532 1647 aa26.25■■□□□ 1.79
CTHRC1-202ENST00000415886 SMARCA2P51531 1590 aa26.23■■□□□ 1.79
CTHRC1-202ENST00000415886 HMGXB3Q12766 1538 aa26.23■■□□□ 1.79
CTHRC1-202ENST00000415886 NESP48681 1621 aa26.17■■□□□ 1.78
CTHRC1-202ENST00000415886 BAZ1BQ9UIG0 1483 aaKnown RBP26.06■■□□□ 1.76
CTHRC1-202ENST00000415886 BAZ1AQ9NRL2 1556 aaPredicted RBP26.05■■□□□ 1.76
CTHRC1-202ENST00000415886 PEG3Q9GZU2 1588 aa25.97■■□□□ 1.75
CTHRC1-202ENST00000415886 THOC2Q8NI27 1593 aaKnown RBP25.95■■□□□ 1.75
CTHRC1-202ENST00000415886 LAMC3Q9Y6N6 1575 aa25.89■■□□□ 1.73
CTHRC1-202ENST00000415886 MROH2BQ7Z745 1585 aa25.86■■□□□ 1.73
CTHRC1-202ENST00000415886 KIF21AQ7Z4S6 1674 aa25.81■■□□□ 1.72
CTHRC1-202ENST00000415886 PDS5BQ9NTI5 1447 aa25.73■■□□□ 1.71
CTHRC1-202ENST00000415886 CADPSQ9ULU8 1353 aa25.61■■□□□ 1.69
CTHRC1-202ENST00000415886 MRC2Q9UBG0 1479 aa25.56■■□□□ 1.68
CTHRC1-202ENST00000415886 WIZO95785 1651 aa25.55■■□□□ 1.68
CTHRC1-202ENST00000415886 WDR62O43379 1518 aa25.52■■□□□ 1.68
CTHRC1-202ENST00000415886 TRIM41Q8WV44 630 aa25.45■■□□□ 1.66
CTHRC1-202ENST00000415886 CEP164Q9UPV0 1460 aa25.4■■□□□ 1.66
CTHRC1-202ENST00000415886 FANCD2Q9BXW9 1451 aa25.34■■□□□ 1.65
CTHRC1-202ENST00000415886 CFTRP13569 1480 aa25.28■■□□□ 1.64
CTHRC1-202ENST00000415886 RSF1Q96T23 1441 aaPredicted RBP25.2■■□□□ 1.63
CTHRC1-202ENST00000415886 TOP2AP11388 1531 aaKnown RBP25.19■■□□□ 1.62
CTHRC1-202ENST00000415886 URB2Q14146 1524 aaKnown RBP25.17■■□□□ 1.62
CTHRC1-202ENST00000415886 OSCARQ8IYS5 282 aa25.12■■□□□ 1.61
CTHRC1-202ENST00000415886 PRDM2Q13029 1718 aa25■■□□□ 1.59
CTHRC1-202ENST00000415886 ZNF608Q9ULD9 1512 aaPredicted RBP24.91■■□□□ 1.58
CTHRC1-202ENST00000415886 CCDC88BA6NC98 1476 aa24.9■■□□□ 1.58
CTHRC1-202ENST00000415886 RIMBP3CA6NJZ7 1639 aa24.89■■□□□ 1.57
CTHRC1-202ENST00000415886 RIMBP3BA6NNM3 1639 aa24.89■■□□□ 1.57
CTHRC1-202ENST00000415886 RIMBP3Q9UFD9 1639 aa24.89■■□□□ 1.57
CTHRC1-202ENST00000415886 IFT140Q96RY7 1462 aa24.89■■□□□ 1.57
CTHRC1-202ENST00000415886 TOPBP1Q92547 1522 aa24.84■■□□□ 1.57
CTHRC1-202ENST00000415886 ARHGEF11O15085 1522 aa24.77■■□□□ 1.56
CTHRC1-202ENST00000415886 EIF4G3O43432 1585 aaKnown RBP24.77■■□□□ 1.56
CTHRC1-202ENST00000415886 DNMBPQ6XZF7 1577 aa24.72■■□□□ 1.55
CTHRC1-202ENST00000415886 ABCC8Q09428 1581 aa24.71■■□□□ 1.55
CTHRC1-202ENST00000415886 TARBP1Q13395 1621 aaKnown RBP24.64■■□□□ 1.54
CTHRC1-202ENST00000415886 AQRO60306 1485 aaKnown RBP eCLIP24.64■■□□□ 1.53
CTHRC1-202ENST00000415886 CHD1O14646 1710 aa24.64■■□□□ 1.53
CTHRC1-202ENST00000415886 CYB5RLQ6IPT4 315 aa24.58■■□□□ 1.53
CTHRC1-202ENST00000415886 POLA1P09884 1462 aaPredicted RBP24.58■■□□□ 1.52
CTHRC1-202ENST00000415886 ARAP1Q96P48 1450 aa24.52■■□□□ 1.52
CTHRC1-202ENST00000415886 FBLN2P98095 1184 aa24.52■■□□□ 1.52
CTHRC1-202ENST00000415886 RAD54L2Q9Y4B4 1467 aa24.5■■□□□ 1.51
CTHRC1-202ENST00000415886 TDRD9Q8NDG6 1382 aaKnown RBP24.44■■□□□ 1.5
CTHRC1-202ENST00000415886 SOGA1O94964 1423 aa24.44■■□□□ 1.5
CTHRC1-202ENST00000415886 TRHP20396 242 aaPredicted RBP24.41■■□□□ 1.5
CTHRC1-202ENST00000415886 SNAPC4Q5SXM2 1469 aa24.39■■□□□ 1.5
CTHRC1-202ENST00000415886 FGD5Q6ZNL6 1462 aa24.38■■□□□ 1.49
CTHRC1-202ENST00000415886 WDR97A6NE52 1622 aa24.34■■□□□ 1.49
CTHRC1-202ENST00000415886 CLASP1Q7Z460 1538 aa24.34■■□□□ 1.49
CTHRC1-202ENST00000415886 CUX1P39880 1505 aa24.32■■□□□ 1.48
CTHRC1-202ENST00000415886 MAGI1Q96QZ7 1491 aaPredicted RBP24.28■■□□□ 1.48
CTHRC1-202ENST00000415886 SYNJ1O43426 1573 aa24.28■■□□□ 1.48
CTHRC1-202ENST00000415886 CHMP7Q8WUX9 453 aaPredicted RBP24.27■■□□□ 1.48
CTHRC1-202ENST00000415886 GRIN2BQ13224 1484 aa24.26■■□□□ 1.47
CTHRC1-202ENST00000415886 SYNJ2O15056 1496 aa24.21■■□□□ 1.47
CTHRC1-202ENST00000415886 PBRM1Q86U86 1689 aa24.18■■□□□ 1.46
CTHRC1-202ENST00000415886 GAPVD1Q14C86 1478 aa24.13■■□□□ 1.45
CTHRC1-202ENST00000415886 ABCA5Q8WWZ7 1642 aa24.08■■□□□ 1.45
CTHRC1-202ENST00000415886 ABCA10Q8WWZ4 1543 aa24.07■■□□□ 1.44
CTHRC1-202ENST00000415886 ERCC6L2Q5T890 1561 aa23.97■■□□□ 1.43
CTHRC1-202ENST00000415886 GRIN2AQ12879 1464 aa23.96■■□□□ 1.43
CTHRC1-202ENST00000415886 ADAMTS12P58397 1594 aa23.93■■□□□ 1.42
CTHRC1-202ENST00000415886 CEP170Q5SW79 1584 aa23.91■■□□□ 1.42
CTHRC1-202ENST00000415886 WRNQ14191 1432 aaPredicted RBP eCLIP23.9■■□□□ 1.42
CTHRC1-202ENST00000415886 AEBP2Q6ZN18 517 aaPredicted RBP23.89■■□□□ 1.41
CTHRC1-202ENST00000415886 NUP160Q12769 1436 aa23.88■■□□□ 1.41
CTHRC1-202ENST00000415886 SUPT5HO00267 1087 aaKnown RBP23.88■■□□□ 1.41
CTHRC1-202ENST00000415886 BIVM-ERCC5R4GMW8 1640 aa23.84■■□□□ 1.41
CTHRC1-202ENST00000415886 TOP2BQ02880 1626 aa23.84■■□□□ 1.41
CTHRC1-202ENST00000415886 SHROOM2Q13796 1616 aa23.82■■□□□ 1.4
CTHRC1-202ENST00000415886 FHAD1B1AJZ9 1412 aa23.81■■□□□ 1.4
CTHRC1-202ENST00000415886 ERICH3Q5RHP9 1530 aa23.75■■□□□ 1.39
CTHRC1-202ENST00000415886 PRG4Q92954 1404 aaPredicted RBP23.67■■□□□ 1.38
CTHRC1-202ENST00000415886 KIF13AQ9H1H9 1805 aa23.66■■□□□ 1.38
CTHRC1-202ENST00000415886 RUSC2Q8N2Y8 1516 aa23.61■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms