RNA–Protein interactions for RNA: ENST00000415758.1

DDX56-202, Transcript of DEAD-box helicase 56, humanhuman

TSL 5

Gene DDX56, Length 1,287 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-202ENST00000415758 NISCHQ9Y2I1 1504 aa39.06■■■■□ 3.84
DDX56-202ENST00000415758 ABCC9O60706 1549 aa35.33■■■■□ 3.25
DDX56-202ENST00000415758 CCDC180Q9P1Z9 1646 aa35.16■■■■□ 3.22
DDX56-202ENST00000415758 RB1CC1Q8TDY2 1594 aa33.57■■■□□ 2.96
DDX56-202ENST00000415758 DNAJC5BQ9UF47 199 aa33.43■■■□□ 2.94
DDX56-202ENST00000415758 NACADO15069 1562 aa33.31■■■□□ 2.92
DDX56-202ENST00000415758 DCAF8L2P0C7V8 631 aa32.99■■■□□ 2.87
DDX56-202ENST00000415758 PABPN1Q86U42 306 aaKnown RBP eCLIP32.86■■■□□ 2.858e-7■■■□□ 18.1
DDX56-202ENST00000415758 MYO15BQ96JP2 1530 aa32.83■■■□□ 2.85
DDX56-202ENST00000415758 UNC13AQ9UPW8 1703 aa32.8■■■□□ 2.84
DDX56-202ENST00000415758 BICRAQ9NZM4 1560 aa32.62■■■□□ 2.81
DDX56-202ENST00000415758 ZCCHC6Q5VYS8 1495 aaKnown RBP32.31■■■□□ 2.76
DDX56-202ENST00000415758 DCAF1Q9Y4B6 1507 aa32.31■■■□□ 2.76
DDX56-202ENST00000415758 SHROOM4Q9ULL8 1493 aa32.2■■■□□ 2.75
DDX56-202ENST00000415758 CC2D2AQ9P2K1 1620 aa31.94■■■□□ 2.7
DDX56-202ENST00000415758 SCRIBQ14160 1630 aa31.93■■■□□ 2.7
DDX56-202ENST00000415758 CECR2Q9BXF3 1484 aa31.89■■■□□ 2.7
DDX56-202ENST00000415758 EIF4G1Q04637 1599 aaKnown RBP31.81■■■□□ 2.68
DDX56-202ENST00000415758 DNAJC5Q9H3Z4 198 aa30.91■■■□□ 2.54
DDX56-202ENST00000415758 NCAPD3P42695 1498 aa30.78■■■□□ 2.52
DDX56-202ENST00000415758 CUX2O14529 1486 aa30.62■■■□□ 2.49
DDX56-202ENST00000415758 ATAD2BQ9ULI0 1458 aa30.62■■■□□ 2.49
DDX56-202ENST00000415758 ERCC6Q03468 1493 aa30.51■■■□□ 2.48
DDX56-202ENST00000415758 SMARCA2P51531 1590 aa30.51■■■□□ 2.47
DDX56-202ENST00000415758 SMARCA4P51532 1647 aa30.5■■■□□ 2.47
DDX56-202ENST00000415758 HMGXB3Q12766 1538 aa30.49■■■□□ 2.47
DDX56-202ENST00000415758 BAZ1AQ9NRL2 1556 aaPredicted RBP30.33■■■□□ 2.45
DDX56-202ENST00000415758 NESP48681 1621 aa30.29■■■□□ 2.44
DDX56-202ENST00000415758 BAZ1BQ9UIG0 1483 aaKnown RBP30.27■■■□□ 2.44
DDX56-202ENST00000415758 PEG3Q9GZU2 1588 aa30.26■■■□□ 2.43
DDX56-202ENST00000415758 LAMC3Q9Y6N6 1575 aa30.09■■■□□ 2.41
DDX56-202ENST00000415758 MROH2BQ7Z745 1585 aa30.07■■■□□ 2.4
DDX56-202ENST00000415758 THOC2Q8NI27 1593 aaKnown RBP30.05■■■□□ 2.4
DDX56-202ENST00000415758 PDS5BQ9NTI5 1447 aa29.93■■■□□ 2.38
DDX56-202ENST00000415758 KIF21AQ7Z4S6 1674 aa29.88■■■□□ 2.37
DDX56-202ENST00000415758 CADPSQ9ULU8 1353 aa29.81■■■□□ 2.36
DDX56-202ENST00000415758 WIZO95785 1651 aa29.68■■■□□ 2.34
DDX56-202ENST00000415758 MRC2Q9UBG0 1479 aa29.66■■■□□ 2.34
DDX56-202ENST00000415758 WDR62O43379 1518 aa29.61■■■□□ 2.33
DDX56-202ENST00000415758 CEP164Q9UPV0 1460 aa29.48■■■□□ 2.31
DDX56-202ENST00000415758 FANCD2Q9BXW9 1451 aa29.43■■■□□ 2.3
DDX56-202ENST00000415758 CFTRP13569 1480 aa29.42■■■□□ 2.3
DDX56-202ENST00000415758 RSF1Q96T23 1441 aaPredicted RBP29.38■■■□□ 2.29
DDX56-202ENST00000415758 TRIM41Q8WV44 630 aa29.33■■■□□ 2.29
DDX56-202ENST00000415758 TOP2AP11388 1531 aaKnown RBP29.3■■■□□ 2.28
DDX56-202ENST00000415758 URB2Q14146 1524 aaKnown RBP29.21■■■□□ 2.27
DDX56-202ENST00000415758 OSCARQ8IYS5 282 aa29.19■■■□□ 2.26
DDX56-202ENST00000415758 PRDM2Q13029 1718 aa29.07■■■□□ 2.24
DDX56-202ENST00000415758 CCDC88BA6NC98 1476 aa28.99■■■□□ 2.23
DDX56-202ENST00000415758 IFT140Q96RY7 1462 aa28.92■■■□□ 2.22
DDX56-202ENST00000415758 ZNF608Q9ULD9 1512 aaPredicted RBP28.88■■■□□ 2.21
DDX56-202ENST00000415758 TOPBP1Q92547 1522 aa28.85■■■□□ 2.21
DDX56-202ENST00000415758 ABCC8Q09428 1581 aa28.83■■■□□ 2.21
DDX56-202ENST00000415758 RIMBP3CA6NJZ7 1639 aa28.79■■■□□ 2.2
DDX56-202ENST00000415758 RIMBP3BA6NNM3 1639 aa28.79■■■□□ 2.2
DDX56-202ENST00000415758 RIMBP3Q9UFD9 1639 aa28.79■■■□□ 2.2
DDX56-202ENST00000415758 DNMBPQ6XZF7 1577 aa28.72■■■□□ 2.19
DDX56-202ENST00000415758 EIF4G3O43432 1585 aaKnown RBP28.69■■■□□ 2.18
DDX56-202ENST00000415758 ARHGEF11O15085 1522 aa28.68■■■□□ 2.18
DDX56-202ENST00000415758 TARBP1Q13395 1621 aaKnown RBP28.63■■■□□ 2.17
DDX56-202ENST00000415758 AQRO60306 1485 aaKnown RBP eCLIP28.59■■■□□ 2.176e-8■■■■□ 22.8
DDX56-202ENST00000415758 POLA1P09884 1462 aaPredicted RBP28.54■■■□□ 2.16
DDX56-202ENST00000415758 CHD1O14646 1710 aa28.52■■■□□ 2.16
DDX56-202ENST00000415758 CYB5RLQ6IPT4 315 aa28.48■■■□□ 2.15
DDX56-202ENST00000415758 SOGA1O94964 1423 aa28.43■■■□□ 2.14
DDX56-202ENST00000415758 RAD54L2Q9Y4B4 1467 aa28.42■■■□□ 2.14
DDX56-202ENST00000415758 FBLN2P98095 1184 aa28.41■■■□□ 2.14
DDX56-202ENST00000415758 TDRD9Q8NDG6 1382 aaKnown RBP28.38■■■□□ 2.13
DDX56-202ENST00000415758 ARAP1Q96P48 1450 aa28.38■■■□□ 2.13
DDX56-202ENST00000415758 WDR97A6NE52 1622 aa28.36■■■□□ 2.13
DDX56-202ENST00000415758 FGD5Q6ZNL6 1462 aa28.32■■■□□ 2.12
DDX56-202ENST00000415758 SNAPC4Q5SXM2 1469 aa28.27■■■□□ 2.12
DDX56-202ENST00000415758 CUX1P39880 1505 aa28.26■■■□□ 2.11
DDX56-202ENST00000415758 MAGI1Q96QZ7 1491 aaPredicted RBP28.23■■■□□ 2.11
DDX56-202ENST00000415758 CLASP1Q7Z460 1538 aa28.23■■■□□ 2.11
DDX56-202ENST00000415758 CHMP7Q8WUX9 453 aaPredicted RBP28.21■■■□□ 2.11
DDX56-202ENST00000415758 TRHP20396 242 aaPredicted RBP28.2■■■□□ 2.1
DDX56-202ENST00000415758 GRIN2BQ13224 1484 aa28.2■■■□□ 2.1
DDX56-202ENST00000415758 SYNJ1O43426 1573 aa28.18■■■□□ 2.1
DDX56-202ENST00000415758 SYNJ2O15056 1496 aa28.15■■■□□ 2.1
DDX56-202ENST00000415758 GAPVD1Q14C86 1478 aa28.06■■■□□ 2.08
DDX56-202ENST00000415758 PBRM1Q86U86 1689 aa28.03■■■□□ 2.08
DDX56-202ENST00000415758 ABCA10Q8WWZ4 1543 aa28.02■■■□□ 2.08
DDX56-202ENST00000415758 ABCA5Q8WWZ7 1642 aa27.98■■■□□ 2.07
DDX56-202ENST00000415758 WRNQ14191 1432 aaPredicted RBP eCLIP27.84■■■□□ 2.05
DDX56-202ENST00000415758 GRIN2AQ12879 1464 aa27.83■■■□□ 2.04
DDX56-202ENST00000415758 SUPT5HO00267 1087 aaKnown RBP27.82■■■□□ 2.04
DDX56-202ENST00000415758 NUP160Q12769 1436 aa27.77■■■□□ 2.04
DDX56-202ENST00000415758 ADAMTS12P58397 1594 aa27.77■■■□□ 2.04
DDX56-202ENST00000415758 TOP2BQ02880 1626 aa27.76■■■□□ 2.03
DDX56-202ENST00000415758 BIVM-ERCC5R4GMW8 1640 aa27.76■■■□□ 2.03
DDX56-202ENST00000415758 ERCC6L2Q5T890 1561 aa27.73■■■□□ 2.03
DDX56-202ENST00000415758 CEP170Q5SW79 1584 aa27.73■■■□□ 2.03
DDX56-202ENST00000415758 FHAD1B1AJZ9 1412 aa27.71■■■□□ 2.03
DDX56-202ENST00000415758 SHROOM2Q13796 1616 aa27.67■■■□□ 2.02
DDX56-202ENST00000415758 ERICH3Q5RHP9 1530 aa27.67■■■□□ 2.02
DDX56-202ENST00000415758 AEBP2Q6ZN18 517 aaPredicted RBP27.56■■■□□ 2
DDX56-202ENST00000415758 JPH4Q96JJ6 628 aa27.5■■□□□ 1.99
DDX56-202ENST00000415758 PRG4Q92954 1404 aaPredicted RBP27.5■■□□□ 1.99
DDX56-202ENST00000415758 KIF13AQ9H1H9 1805 aa27.41■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms