RNA–Protein interactions for RNA: ENST00000415281.1

NCKIPSD-203, Transcript of NCK interacting protein with SH3 domain, humanhuman

TSL 3

Gene NCKIPSD, Length 803 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCKIPSD-203ENST00000415281 NISCHQ9Y2I1 1504 aa31.4■■■□□ 2.62
NCKIPSD-203ENST00000415281 CCDC180Q9P1Z9 1646 aa28.1■■■□□ 2.09
NCKIPSD-203ENST00000415281 ABCC9O60706 1549 aa28.07■■■□□ 2.08
NCKIPSD-203ENST00000415281 RB1CC1Q8TDY2 1594 aa26.68■■□□□ 1.86
NCKIPSD-203ENST00000415281 NACADO15069 1562 aa26.54■■□□□ 1.84
NCKIPSD-203ENST00000415281 DNAJC5BQ9UF47 199 aa26.45■■□□□ 1.82
NCKIPSD-203ENST00000415281 DCAF8L2P0C7V8 631 aa26.36■■□□□ 1.81
NCKIPSD-203ENST00000415281 UNC13AQ9UPW8 1703 aa26.25■■□□□ 1.79
NCKIPSD-203ENST00000415281 MYO15BQ96JP2 1530 aa26.22■■□□□ 1.79
NCKIPSD-203ENST00000415281 PABPN1Q86U42 306 aaKnown RBP eCLIP26.17■■□□□ 1.78
NCKIPSD-203ENST00000415281 BICRAQ9NZM4 1560 aa26.07■■□□□ 1.76
NCKIPSD-203ENST00000415281 ZCCHC6Q5VYS8 1495 aaKnown RBP26.03■■□□□ 1.76
NCKIPSD-203ENST00000415281 DCAF1Q9Y4B6 1507 aa25.93■■□□□ 1.74
NCKIPSD-203ENST00000415281 SCRIBQ14160 1630 aa25.61■■□□□ 1.69
NCKIPSD-203ENST00000415281 SHROOM4Q9ULL8 1493 aa25.53■■□□□ 1.68
NCKIPSD-203ENST00000415281 CC2D2AQ9P2K1 1620 aa25.38■■□□□ 1.65
NCKIPSD-203ENST00000415281 EIF4G1Q04637 1599 aaKnown RBP25.33■■□□□ 1.65
NCKIPSD-203ENST00000415281 CECR2Q9BXF3 1484 aa25.25■■□□□ 1.63
NCKIPSD-203ENST00000415281 NCAPD3P42695 1498 aa24.56■■□□□ 1.52
NCKIPSD-203ENST00000415281 ATAD2BQ9ULI0 1458 aa24.49■■□□□ 1.51
NCKIPSD-203ENST00000415281 SMARCA4P51532 1647 aa24.47■■□□□ 1.51
NCKIPSD-203ENST00000415281 SMARCA2P51531 1590 aa24.33■■□□□ 1.49
NCKIPSD-203ENST00000415281 HMGXB3Q12766 1538 aa24.33■■□□□ 1.49
NCKIPSD-203ENST00000415281 BAZ1AQ9NRL2 1556 aaPredicted RBP24.3■■□□□ 1.48
NCKIPSD-203ENST00000415281 PEG3Q9GZU2 1588 aa24.26■■□□□ 1.47
NCKIPSD-203ENST00000415281 MROH2BQ7Z745 1585 aa24.24■■□□□ 1.47
NCKIPSD-203ENST00000415281 NESP48681 1621 aa24.2■■□□□ 1.46
NCKIPSD-203ENST00000415281 BAZ1BQ9UIG0 1483 aaKnown RBP24.17■■□□□ 1.46
NCKIPSD-203ENST00000415281 DNAJC5Q9H3Z4 198 aa24.12■■□□□ 1.45
NCKIPSD-203ENST00000415281 CUX2O14529 1486 aa24.1■■□□□ 1.45
NCKIPSD-203ENST00000415281 ERCC6Q03468 1493 aa24.09■■□□□ 1.45
NCKIPSD-203ENST00000415281 WIZO95785 1651 aa23.95■■□□□ 1.43
NCKIPSD-203ENST00000415281 LAMC3Q9Y6N6 1575 aa23.94■■□□□ 1.42
NCKIPSD-203ENST00000415281 THOC2Q8NI27 1593 aaKnown RBP23.91■■□□□ 1.42
NCKIPSD-203ENST00000415281 KIF21AQ7Z4S6 1674 aa23.86■■□□□ 1.41
NCKIPSD-203ENST00000415281 CADPSQ9ULU8 1353 aa23.78■■□□□ 1.4
NCKIPSD-203ENST00000415281 PDS5BQ9NTI5 1447 aa23.75■■□□□ 1.39
NCKIPSD-203ENST00000415281 RSF1Q96T23 1441 aaPredicted RBP23.74■■□□□ 1.39
NCKIPSD-203ENST00000415281 TOP2AP11388 1531 aaKnown RBP23.58■■□□□ 1.36
NCKIPSD-203ENST00000415281 MRC2Q9UBG0 1479 aa23.57■■□□□ 1.36
NCKIPSD-203ENST00000415281 WDR62O43379 1518 aa23.56■■□□□ 1.36
NCKIPSD-203ENST00000415281 CFTRP13569 1480 aa23.55■■□□□ 1.36
NCKIPSD-203ENST00000415281 FANCD2Q9BXW9 1451 aa23.49■■□□□ 1.35
NCKIPSD-203ENST00000415281 CEP164Q9UPV0 1460 aa23.47■■□□□ 1.35
NCKIPSD-203ENST00000415281 CCDC88BA6NC98 1476 aa23.37■■□□□ 1.33
NCKIPSD-203ENST00000415281 URB2Q14146 1524 aaKnown RBP23.37■■□□□ 1.33
NCKIPSD-203ENST00000415281 PRDM2Q13029 1718 aa23.3■■□□□ 1.32
NCKIPSD-203ENST00000415281 TOPBP1Q92547 1522 aa23.08■■□□□ 1.29
NCKIPSD-203ENST00000415281 ZNF608Q9ULD9 1512 aaPredicted RBP23.08■■□□□ 1.28
NCKIPSD-203ENST00000415281 IFT140Q96RY7 1462 aa23.01■■□□□ 1.27
NCKIPSD-203ENST00000415281 OSCARQ8IYS5 282 aa23.01■■□□□ 1.27
NCKIPSD-203ENST00000415281 TRIM41Q8WV44 630 aa22.98■■□□□ 1.27
NCKIPSD-203ENST00000415281 DNMBPQ6XZF7 1577 aa22.97■■□□□ 1.27
NCKIPSD-203ENST00000415281 ABCC8Q09428 1581 aa22.95■■□□□ 1.26
NCKIPSD-203ENST00000415281 TARBP1Q13395 1621 aaKnown RBP22.93■■□□□ 1.26
NCKIPSD-203ENST00000415281 EIF4G3O43432 1585 aaKnown RBP22.89■■□□□ 1.26
NCKIPSD-203ENST00000415281 AQRO60306 1485 aaKnown RBP eCLIP22.85■■□□□ 1.258e-7■■■■■ 28.7
NCKIPSD-203ENST00000415281 POLA1P09884 1462 aaPredicted RBP22.85■■□□□ 1.25
NCKIPSD-203ENST00000415281 RAD54L2Q9Y4B4 1467 aa22.8■■□□□ 1.24
NCKIPSD-203ENST00000415281 RIMBP3CA6NJZ7 1639 aa22.79■■□□□ 1.24
NCKIPSD-203ENST00000415281 RIMBP3BA6NNM3 1639 aa22.79■■□□□ 1.24
NCKIPSD-203ENST00000415281 RIMBP3Q9UFD9 1639 aa22.79■■□□□ 1.24
NCKIPSD-203ENST00000415281 CUX1P39880 1505 aa22.75■■□□□ 1.23
NCKIPSD-203ENST00000415281 CHD1O14646 1710 aa22.74■■□□□ 1.23
NCKIPSD-203ENST00000415281 SOGA1O94964 1423 aa22.73■■□□□ 1.23
NCKIPSD-203ENST00000415281 FGD5Q6ZNL6 1462 aa22.71■■□□□ 1.23
NCKIPSD-203ENST00000415281 TDRD9Q8NDG6 1382 aaKnown RBP22.7■■□□□ 1.22
NCKIPSD-203ENST00000415281 ARHGEF11O15085 1522 aa22.69■■□□□ 1.22
NCKIPSD-203ENST00000415281 SUPT5HO00267 1087 aaKnown RBP22.64■■□□□ 1.21
NCKIPSD-203ENST00000415281 WDR97A6NE52 1622 aa22.6■■□□□ 1.21
NCKIPSD-203ENST00000415281 SNAPC4Q5SXM2 1469 aa22.56■■□□□ 1.2
NCKIPSD-203ENST00000415281 FBLN2P98095 1184 aa22.56■■□□□ 1.2
NCKIPSD-203ENST00000415281 ARAP1Q96P48 1450 aa22.5■■□□□ 1.19
NCKIPSD-203ENST00000415281 CYB5RLQ6IPT4 315 aa22.5■■□□□ 1.19
NCKIPSD-203ENST00000415281 CLASP1Q7Z460 1538 aa22.5■■□□□ 1.19
NCKIPSD-203ENST00000415281 GRIN2BQ13224 1484 aa22.49■■□□□ 1.19
NCKIPSD-203ENST00000415281 MAGI1Q96QZ7 1491 aaPredicted RBP22.47■■□□□ 1.19
NCKIPSD-203ENST00000415281 ABCA10Q8WWZ4 1543 aa22.46■■□□□ 1.19
NCKIPSD-203ENST00000415281 PBRM1Q86U86 1689 aa22.46■■□□□ 1.19
NCKIPSD-203ENST00000415281 ABCA5Q8WWZ7 1642 aa22.44■■□□□ 1.18
NCKIPSD-203ENST00000415281 GAPVD1Q14C86 1478 aa22.43■■□□□ 1.18
NCKIPSD-203ENST00000415281 SYNJ2O15056 1496 aa22.42■■□□□ 1.18
NCKIPSD-203ENST00000415281 CHMP7Q8WUX9 453 aaPredicted RBP22.41■■□□□ 1.18
NCKIPSD-203ENST00000415281 BIVM-ERCC5R4GMW8 1640 aa22.39■■□□□ 1.17
NCKIPSD-203ENST00000415281 SYNJ1O43426 1573 aa22.38■■□□□ 1.17
NCKIPSD-203ENST00000415281 TOP2BQ02880 1626 aa22.36■■□□□ 1.17
NCKIPSD-203ENST00000415281 WRNQ14191 1432 aaPredicted RBP eCLIP22.31■■□□□ 1.16
NCKIPSD-203ENST00000415281 ADAMTS12P58397 1594 aa22.24■■□□□ 1.15
NCKIPSD-203ENST00000415281 GRIN2AQ12879 1464 aa22.23■■□□□ 1.15
NCKIPSD-203ENST00000415281 ERCC6L2Q5T890 1561 aa22.21■■□□□ 1.15
NCKIPSD-203ENST00000415281 CEP170Q5SW79 1584 aa22.21■■□□□ 1.15
NCKIPSD-203ENST00000415281 NUP160Q12769 1436 aa22.18■■□□□ 1.14
NCKIPSD-203ENST00000415281 ERICH3Q5RHP9 1530 aa22.15■■□□□ 1.14
NCKIPSD-203ENST00000415281 FHAD1B1AJZ9 1412 aa22.14■■□□□ 1.14
NCKIPSD-203ENST00000415281 TRHP20396 242 aaPredicted RBP22.14■■□□□ 1.13
NCKIPSD-203ENST00000415281 SHROOM2Q13796 1616 aa22.11■■□□□ 1.13
NCKIPSD-203ENST00000415281 IGF1RP08069 1367 aa21.96■■□□□ 1.11
NCKIPSD-203ENST00000415281 JPH4Q96JJ6 628 aa21.94■■□□□ 1.1
NCKIPSD-203ENST00000415281 RUSC2Q8N2Y8 1516 aa21.93■■□□□ 1.1
NCKIPSD-203ENST00000415281 PRG4Q92954 1404 aaPredicted RBP21.93■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms