RNA–Protein interactions for RNA: ENST00000414218.1

LMBR1-203, Transcript of limb development membrane protein 1, humanhuman

TSL 5

Gene LMBR1, Length 451 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMBR1-203ENST00000414218 NISCHQ9Y2I1 1504 aa51.14■■■■■ 5.78
LMBR1-203ENST00000414218 CCDC180Q9P1Z9 1646 aa45.72■■■■■ 4.91
LMBR1-203ENST00000414218 ABCC9O60706 1549 aa45.48■■■■■ 4.87
LMBR1-203ENST00000414218 RB1CC1Q8TDY2 1594 aa43.39■■■■■ 4.54
LMBR1-203ENST00000414218 NACADO15069 1562 aa43.16■■■■■ 4.5
LMBR1-203ENST00000414218 DCAF8L2P0C7V8 631 aa43.12■■■■■ 4.49
LMBR1-203ENST00000414218 MYO15BQ96JP2 1530 aa42.64■■■■■ 4.42
LMBR1-203ENST00000414218 UNC13AQ9UPW8 1703 aa42.44■■■■■ 4.38
LMBR1-203ENST00000414218 ZCCHC6Q5VYS8 1495 aaKnown RBP42.43■■■■■ 4.38
LMBR1-203ENST00000414218 PABPN1Q86U42 306 aaKnown RBP eCLIP42.43■■■■■ 4.38
LMBR1-203ENST00000414218 DNAJC5BQ9UF47 199 aa42.42■■■■■ 4.38
LMBR1-203ENST00000414218 DCAF1Q9Y4B6 1507 aa42.22■■■■■ 4.35
LMBR1-203ENST00000414218 BICRAQ9NZM4 1560 aa42.13■■■■■ 4.33
LMBR1-203ENST00000414218 SCRIBQ14160 1630 aa41.73■■■■■ 4.27
LMBR1-203ENST00000414218 SHROOM4Q9ULL8 1493 aa41.52■■■■■ 4.24
LMBR1-203ENST00000414218 CC2D2AQ9P2K1 1620 aa41.07■■■■■ 4.17
LMBR1-203ENST00000414218 EIF4G1Q04637 1599 aaKnown RBP41.05■■■■■ 4.16
LMBR1-203ENST00000414218 CECR2Q9BXF3 1484 aa40.91■■■■■ 4.14
LMBR1-203ENST00000414218 NCAPD3P42695 1498 aa39.85■■■■□ 3.97
LMBR1-203ENST00000414218 SMARCA4P51532 1647 aa39.83■■■■□ 3.97
LMBR1-203ENST00000414218 ATAD2BQ9ULI0 1458 aa39.79■■■■□ 3.96
LMBR1-203ENST00000414218 SMARCA2P51531 1590 aa39.68■■■■□ 3.94
LMBR1-203ENST00000414218 BAZ1AQ9NRL2 1556 aaPredicted RBP39.66■■■■□ 3.94
LMBR1-203ENST00000414218 HMGXB3Q12766 1538 aa39.56■■■■□ 3.92
LMBR1-203ENST00000414218 MROH2BQ7Z745 1585 aa39.43■■■■□ 3.9
LMBR1-203ENST00000414218 BAZ1BQ9UIG0 1483 aaKnown RBP39.42■■■■□ 3.9
LMBR1-203ENST00000414218 PEG3Q9GZU2 1588 aa39.4■■■■□ 3.9
LMBR1-203ENST00000414218 ERCC6Q03468 1493 aa39.24■■■■□ 3.87
LMBR1-203ENST00000414218 NESP48681 1621 aa39.17■■■■□ 3.86
LMBR1-203ENST00000414218 CUX2O14529 1486 aa39.02■■■■□ 3.84
LMBR1-203ENST00000414218 WIZO95785 1651 aa38.98■■■■□ 3.83
LMBR1-203ENST00000414218 LAMC3Q9Y6N6 1575 aa38.9■■■■□ 3.82
LMBR1-203ENST00000414218 RSF1Q96T23 1441 aaPredicted RBP38.72■■■■□ 3.79
LMBR1-203ENST00000414218 DNAJC5Q9H3Z4 198 aa38.69■■■■□ 3.78
LMBR1-203ENST00000414218 PDS5BQ9NTI5 1447 aa38.68■■■■□ 3.78
LMBR1-203ENST00000414218 CADPSQ9ULU8 1353 aa38.67■■■■□ 3.78
LMBR1-203ENST00000414218 THOC2Q8NI27 1593 aaKnown RBP38.65■■■■□ 3.78
LMBR1-203ENST00000414218 KIF21AQ7Z4S6 1674 aa38.65■■■■□ 3.78
LMBR1-203ENST00000414218 TOP2AP11388 1531 aaKnown RBP38.48■■■■□ 3.75
LMBR1-203ENST00000414218 MRC2Q9UBG0 1479 aa38.32■■■■□ 3.72
LMBR1-203ENST00000414218 CFTRP13569 1480 aa38.28■■■■□ 3.72
LMBR1-203ENST00000414218 CEP164Q9UPV0 1460 aa38.24■■■■□ 3.71
LMBR1-203ENST00000414218 FANCD2Q9BXW9 1451 aa38.23■■■■□ 3.71
LMBR1-203ENST00000414218 WDR62O43379 1518 aa38.2■■■■□ 3.71
LMBR1-203ENST00000414218 CCDC88BA6NC98 1476 aa38.07■■■■□ 3.68
LMBR1-203ENST00000414218 PRDM2Q13029 1718 aa37.92■■■■□ 3.66
LMBR1-203ENST00000414218 URB2Q14146 1524 aaKnown RBP37.91■■■■□ 3.66
LMBR1-203ENST00000414218 TOPBP1Q92547 1522 aa37.55■■■■□ 3.6
LMBR1-203ENST00000414218 ABCC8Q09428 1581 aa37.46■■■■□ 3.59
LMBR1-203ENST00000414218 IFT140Q96RY7 1462 aa37.45■■■■□ 3.59
LMBR1-203ENST00000414218 DNMBPQ6XZF7 1577 aa37.42■■■■□ 3.58
LMBR1-203ENST00000414218 ZNF608Q9ULD9 1512 aaPredicted RBP37.39■■■■□ 3.58
LMBR1-203ENST00000414218 OSCARQ8IYS5 282 aa37.35■■■■□ 3.57
LMBR1-203ENST00000414218 SUPT5HO00267 1087 aaKnown RBP37.32■■■■□ 3.56
LMBR1-203ENST00000414218 TARBP1Q13395 1621 aaKnown RBP37.18■■■■□ 3.54
LMBR1-203ENST00000414218 POLA1P09884 1462 aaPredicted RBP37.18■■■■□ 3.54
LMBR1-203ENST00000414218 EIF4G3O43432 1585 aaKnown RBP37.17■■■■□ 3.54
LMBR1-203ENST00000414218 TRIM41Q8WV44 630 aa37.16■■■■□ 3.54
LMBR1-203ENST00000414218 AQRO60306 1485 aaKnown RBP eCLIP37.1■■■■□ 3.535e-8■■■■■ 27.4
LMBR1-203ENST00000414218 RAD54L2Q9Y4B4 1467 aa37.07■■■■□ 3.52
LMBR1-203ENST00000414218 SOGA1O94964 1423 aa37.04■■■■□ 3.52
LMBR1-203ENST00000414218 CUX1P39880 1505 aa37.03■■■■□ 3.52
LMBR1-203ENST00000414218 FGD5Q6ZNL6 1462 aa37■■■■□ 3.51
LMBR1-203ENST00000414218 TDRD9Q8NDG6 1382 aaKnown RBP36.94■■■■□ 3.5
LMBR1-203ENST00000414218 CHD1O14646 1710 aa36.87■■■■□ 3.49
LMBR1-203ENST00000414218 FBLN2P98095 1184 aa36.83■■■■□ 3.49
LMBR1-203ENST00000414218 RIMBP3CA6NJZ7 1639 aa36.81■■■■□ 3.48
LMBR1-203ENST00000414218 RIMBP3BA6NNM3 1639 aa36.81■■■■□ 3.48
LMBR1-203ENST00000414218 RIMBP3Q9UFD9 1639 aa36.81■■■■□ 3.48
LMBR1-203ENST00000414218 WDR97A6NE52 1622 aa36.78■■■■□ 3.48
LMBR1-203ENST00000414218 SNAPC4Q5SXM2 1469 aa36.72■■■■□ 3.47
LMBR1-203ENST00000414218 ARHGEF11O15085 1522 aa36.7■■■■□ 3.47
LMBR1-203ENST00000414218 GRIN2BQ13224 1484 aa36.66■■■■□ 3.46
LMBR1-203ENST00000414218 MAGI1Q96QZ7 1491 aaPredicted RBP36.62■■■■□ 3.45
LMBR1-203ENST00000414218 CHMP7Q8WUX9 453 aaPredicted RBP36.59■■■■□ 3.45
LMBR1-203ENST00000414218 ABCA10Q8WWZ4 1543 aa36.59■■■■□ 3.45
LMBR1-203ENST00000414218 GAPVD1Q14C86 1478 aa36.58■■■■□ 3.45
LMBR1-203ENST00000414218 PBRM1Q86U86 1689 aa36.54■■■■□ 3.44
LMBR1-203ENST00000414218 WRNQ14191 1432 aaPredicted RBP eCLIP36.52■■■■□ 3.442e-6■■■■■ 59.6
LMBR1-203ENST00000414218 TOP2BQ02880 1626 aa36.5■■■■□ 3.43
LMBR1-203ENST00000414218 SYNJ2O15056 1496 aa36.5■■■■□ 3.43
LMBR1-203ENST00000414218 ABCA5Q8WWZ7 1642 aa36.49■■■■□ 3.43
LMBR1-203ENST00000414218 BIVM-ERCC5R4GMW8 1640 aa36.49■■■■□ 3.43
LMBR1-203ENST00000414218 CYB5RLQ6IPT4 315 aa36.48■■■■□ 3.43
LMBR1-203ENST00000414218 SYNJ1O43426 1573 aa36.48■■■■□ 3.43
LMBR1-203ENST00000414218 CLASP1Q7Z460 1538 aa36.42■■■■□ 3.42
LMBR1-203ENST00000414218 ARAP1Q96P48 1450 aa36.38■■■■□ 3.41
LMBR1-203ENST00000414218 ADAMTS12P58397 1594 aa36.19■■■■□ 3.38
LMBR1-203ENST00000414218 GRIN2AQ12879 1464 aa36.18■■■■□ 3.38
LMBR1-203ENST00000414218 ERICH3Q5RHP9 1530 aa36.13■■■■□ 3.37
LMBR1-203ENST00000414218 FHAD1B1AJZ9 1412 aa36.12■■■■□ 3.37
LMBR1-203ENST00000414218 CEP170Q5SW79 1584 aa36.05■■■■□ 3.36
LMBR1-203ENST00000414218 NUP160Q12769 1436 aa36.04■■■■□ 3.36
LMBR1-203ENST00000414218 TRHP20396 242 aaPredicted RBP35.98■■■■□ 3.35
LMBR1-203ENST00000414218 ERCC6L2Q5T890 1561 aa35.92■■■■□ 3.34
LMBR1-203ENST00000414218 SHROOM2Q13796 1616 aa35.84■■■■□ 3.33
LMBR1-203ENST00000414218 KIF27Q86VH2 1401 aa35.81■■■■□ 3.32
LMBR1-203ENST00000414218 IGF1RP08069 1367 aa35.77■■■■□ 3.32
LMBR1-203ENST00000414218 JPH4Q96JJ6 628 aa35.73■■■■□ 3.31
LMBR1-203ENST00000414218 PRG4Q92954 1404 aaPredicted RBP35.7■■■■□ 3.31
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms