RNA–Protein interactions for RNA: ENST00000414057.6

SCAMP4-204, Transcript of secretory carrier membrane protein 4, humanhuman

TSL 1 (best)

Gene SCAMP4, Length 1,477 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAMP4-204ENST00000414057 NISCHQ9Y2I1 1504 aa41.3■■■■■ 4.2
SCAMP4-204ENST00000414057 CCDC180Q9P1Z9 1646 aa36.92■■■■□ 3.5
SCAMP4-204ENST00000414057 ABCC9O60706 1549 aa36.64■■■■□ 3.46
SCAMP4-204ENST00000414057 RB1CC1Q8TDY2 1594 aa35.05■■■■□ 3.2
SCAMP4-204ENST00000414057 NACADO15069 1562 aa34.9■■■■□ 3.18
SCAMP4-204ENST00000414057 DCAF8L2P0C7V8 631 aa34.82■■■■□ 3.16
SCAMP4-204ENST00000414057 MYO15BQ96JP2 1530 aa34.54■■■■□ 3.12
SCAMP4-204ENST00000414057 ZCCHC6Q5VYS8 1495 aaKnown RBP34.28■■■■□ 3.08
SCAMP4-204ENST00000414057 PABPN1Q86U42 306 aaKnown RBP eCLIP34.18■■■■□ 3.06
SCAMP4-204ENST00000414057 DCAF1Q9Y4B6 1507 aa34.18■■■■□ 3.06
SCAMP4-204ENST00000414057 UNC13AQ9UPW8 1703 aa34.08■■■■□ 3.05
SCAMP4-204ENST00000414057 DNAJC5BQ9UF47 199 aa34.07■■■■□ 3.04
SCAMP4-204ENST00000414057 BICRAQ9NZM4 1560 aa33.91■■■■□ 3.02
SCAMP4-204ENST00000414057 SHROOM4Q9ULL8 1493 aa33.65■■■□□ 2.98
SCAMP4-204ENST00000414057 SCRIBQ14160 1630 aa33.62■■■□□ 2.97
SCAMP4-204ENST00000414057 EIF4G1Q04637 1599 aaKnown RBP33.13■■■□□ 2.89
SCAMP4-204ENST00000414057 CC2D2AQ9P2K1 1620 aa33.1■■■□□ 2.89
SCAMP4-204ENST00000414057 CECR2Q9BXF3 1484 aa33.01■■■□□ 2.88
SCAMP4-204ENST00000414057 NCAPD3P42695 1498 aa32.22■■■□□ 2.75
SCAMP4-204ENST00000414057 SMARCA4P51532 1647 aa32.13■■■□□ 2.73
SCAMP4-204ENST00000414057 ATAD2BQ9ULI0 1458 aa32.12■■■□□ 2.73
SCAMP4-204ENST00000414057 SMARCA2P51531 1590 aa32.09■■■□□ 2.73
SCAMP4-204ENST00000414057 BAZ1AQ9NRL2 1556 aaPredicted RBP32.08■■■□□ 2.73
SCAMP4-204ENST00000414057 HMGXB3Q12766 1538 aa31.98■■■□□ 2.71
SCAMP4-204ENST00000414057 BAZ1BQ9UIG0 1483 aaKnown RBP31.86■■■□□ 2.69
SCAMP4-204ENST00000414057 PEG3Q9GZU2 1588 aa31.85■■■□□ 2.69
SCAMP4-204ENST00000414057 MROH2BQ7Z745 1585 aa31.78■■■□□ 2.68
SCAMP4-204ENST00000414057 ERCC6Q03468 1493 aa31.69■■■□□ 2.66
SCAMP4-204ENST00000414057 CUX2O14529 1486 aa31.53■■■□□ 2.64
SCAMP4-204ENST00000414057 NESP48681 1621 aa31.51■■■□□ 2.63
SCAMP4-204ENST00000414057 LAMC3Q9Y6N6 1575 aa31.43■■■□□ 2.62
SCAMP4-204ENST00000414057 WIZO95785 1651 aa31.39■■■□□ 2.61
SCAMP4-204ENST00000414057 PDS5BQ9NTI5 1447 aa31.3■■■□□ 2.6
SCAMP4-204ENST00000414057 RSF1Q96T23 1441 aaPredicted RBP31.28■■■□□ 2.6
SCAMP4-204ENST00000414057 CADPSQ9ULU8 1353 aa31.27■■■□□ 2.6
SCAMP4-204ENST00000414057 DNAJC5Q9H3Z4 198 aa31.18■■■□□ 2.58
SCAMP4-204ENST00000414057 THOC2Q8NI27 1593 aaKnown RBP31.13■■■□□ 2.57
SCAMP4-204ENST00000414057 KIF21AQ7Z4S6 1674 aa31.09■■■□□ 2.57
SCAMP4-204ENST00000414057 TOP2AP11388 1531 aaKnown RBP31.08■■■□□ 2.57
SCAMP4-204ENST00000414057 MRC2Q9UBG0 1479 aa30.96■■■□□ 2.55
SCAMP4-204ENST00000414057 CFTRP13569 1480 aa30.94■■■□□ 2.54
SCAMP4-204ENST00000414057 CEP164Q9UPV0 1460 aa30.9■■■□□ 2.54
SCAMP4-204ENST00000414057 FANCD2Q9BXW9 1451 aa30.87■■■□□ 2.53
SCAMP4-204ENST00000414057 WDR62O43379 1518 aa30.84■■■□□ 2.53
SCAMP4-204ENST00000414057 CCDC88BA6NC98 1476 aa30.72■■■□□ 2.51
SCAMP4-204ENST00000414057 PRDM2Q13029 1718 aa30.55■■■□□ 2.48
SCAMP4-204ENST00000414057 URB2Q14146 1524 aaKnown RBP30.55■■■□□ 2.48
SCAMP4-204ENST00000414057 ABCC8Q09428 1581 aa30.37■■■□□ 2.45
SCAMP4-204ENST00000414057 TOPBP1Q92547 1522 aa30.3■■■□□ 2.44
SCAMP4-204ENST00000414057 IFT140Q96RY7 1462 aa30.29■■■□□ 2.44
SCAMP4-204ENST00000414057 DNMBPQ6XZF7 1577 aa30.22■■■□□ 2.43
SCAMP4-204ENST00000414057 OSCARQ8IYS5 282 aa30.19■■■□□ 2.42
SCAMP4-204ENST00000414057 SUPT5HO00267 1087 aaKnown RBP30.14■■■□□ 2.42
SCAMP4-204ENST00000414057 ZNF608Q9ULD9 1512 aaPredicted RBP30.11■■■□□ 2.41
SCAMP4-204ENST00000414057 POLA1P09884 1462 aaPredicted RBP30.01■■■□□ 2.39
SCAMP4-204ENST00000414057 EIF4G3O43432 1585 aaKnown RBP29.97■■■□□ 2.39
SCAMP4-204ENST00000414057 TARBP1Q13395 1621 aaKnown RBP29.96■■■□□ 2.39
SCAMP4-204ENST00000414057 SOGA1O94964 1423 aa29.93■■■□□ 2.38
SCAMP4-204ENST00000414057 TRIM41Q8WV44 630 aa29.93■■■□□ 2.38
SCAMP4-204ENST00000414057 AQRO60306 1485 aaKnown RBP eCLIP29.92■■■□□ 2.383e-7■■■■■ 45.3
SCAMP4-204ENST00000414057 FGD5Q6ZNL6 1462 aa29.87■■■□□ 2.37
SCAMP4-204ENST00000414057 RAD54L2Q9Y4B4 1467 aa29.87■■■□□ 2.37
SCAMP4-204ENST00000414057 CUX1P39880 1505 aa29.85■■■□□ 2.37
SCAMP4-204ENST00000414057 TDRD9Q8NDG6 1382 aaKnown RBP29.8■■■□□ 2.36
SCAMP4-204ENST00000414057 WDR97A6NE52 1622 aa29.79■■■□□ 2.36
SCAMP4-204ENST00000414057 FBLN2P98095 1184 aa29.74■■■□□ 2.35
SCAMP4-204ENST00000414057 CHD1O14646 1710 aa29.65■■■□□ 2.34
SCAMP4-204ENST00000414057 GRIN2BQ13224 1484 aa29.63■■■□□ 2.33
SCAMP4-204ENST00000414057 SNAPC4Q5SXM2 1469 aa29.63■■■□□ 2.33
SCAMP4-204ENST00000414057 RIMBP3CA6NJZ7 1639 aa29.62■■■□□ 2.33
SCAMP4-204ENST00000414057 RIMBP3BA6NNM3 1639 aa29.62■■■□□ 2.33
SCAMP4-204ENST00000414057 RIMBP3Q9UFD9 1639 aa29.62■■■□□ 2.33
SCAMP4-204ENST00000414057 MAGI1Q96QZ7 1491 aaPredicted RBP29.61■■■□□ 2.33
SCAMP4-204ENST00000414057 CHMP7Q8WUX9 453 aaPredicted RBP29.61■■■□□ 2.33
SCAMP4-204ENST00000414057 ARHGEF11O15085 1522 aa29.59■■■□□ 2.33
SCAMP4-204ENST00000414057 ABCA10Q8WWZ4 1543 aa29.57■■■□□ 2.32
SCAMP4-204ENST00000414057 GAPVD1Q14C86 1478 aa29.56■■■□□ 2.32
SCAMP4-204ENST00000414057 WRNQ14191 1432 aaPredicted RBP eCLIP29.55■■■□□ 2.32
SCAMP4-204ENST00000414057 SYNJ2O15056 1496 aa29.51■■■□□ 2.31
SCAMP4-204ENST00000414057 TOP2BQ02880 1626 aa29.48■■■□□ 2.31
SCAMP4-204ENST00000414057 BIVM-ERCC5R4GMW8 1640 aa29.45■■■□□ 2.3
SCAMP4-204ENST00000414057 SYNJ1O43426 1573 aa29.45■■■□□ 2.3
SCAMP4-204ENST00000414057 ABCA5Q8WWZ7 1642 aa29.44■■■□□ 2.3
SCAMP4-204ENST00000414057 PBRM1Q86U86 1689 aa29.42■■■□□ 2.3
SCAMP4-204ENST00000414057 CYB5RLQ6IPT4 315 aa29.42■■■□□ 2.3
SCAMP4-204ENST00000414057 CLASP1Q7Z460 1538 aa29.37■■■□□ 2.29
SCAMP4-204ENST00000414057 ARAP1Q96P48 1450 aa29.31■■■□□ 2.28
SCAMP4-204ENST00000414057 GRIN2AQ12879 1464 aa29.23■■■□□ 2.27
SCAMP4-204ENST00000414057 FHAD1B1AJZ9 1412 aa29.22■■■□□ 2.27
SCAMP4-204ENST00000414057 ERICH3Q5RHP9 1530 aa29.22■■■□□ 2.27
SCAMP4-204ENST00000414057 ADAMTS12P58397 1594 aa29.2■■■□□ 2.27
SCAMP4-204ENST00000414057 NUP160Q12769 1436 aa29.12■■■□□ 2.25
SCAMP4-204ENST00000414057 CEP170Q5SW79 1584 aa29.05■■■□□ 2.24
SCAMP4-204ENST00000414057 TRHP20396 242 aaPredicted RBP29.04■■■□□ 2.24
SCAMP4-204ENST00000414057 KIF27Q86VH2 1401 aa29■■■□□ 2.23
SCAMP4-204ENST00000414057 SHROOM2Q13796 1616 aa28.91■■■□□ 2.22
SCAMP4-204ENST00000414057 IGF1RP08069 1367 aa28.9■■■□□ 2.22
SCAMP4-204ENST00000414057 JPH4Q96JJ6 628 aa28.88■■■□□ 2.21
SCAMP4-204ENST00000414057 ERCC6L2Q5T890 1561 aa28.87■■■□□ 2.21
SCAMP4-204ENST00000414057 PRG4Q92954 1404 aaPredicted RBP28.83■■■□□ 2.21
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms